메뉴 건너뛰기




Volumn 25, Issue 14, 2011, Pages 1486-1498

Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC)

Author keywords

AFF4; ELL2; Immediate early genes; Transcription elongation

Indexed keywords

POSITIVE TRANSCRIPTION ELONGATION FACTOR B; RNA POLYMERASE II; SUPER ELONGATION COMPLEX; UNCLASSIFIED DRUG;

EID: 79960401863     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.2059211     Document Type: Article
Times cited : (155)

References (54)
  • 1
    • 0035862977 scopus 로고    scopus 로고
    • The retinoic acid-metabolizing enzyme, CYP26A1, is essential for normal hindbrain patterning, vertebral identity, and development of posterior structures
    • Abu-Abed S, Dolle P, Metzger D, Beckett B, Chambon P, Petkovich M. 2001. The retinoic acid-metabolizing enzyme, CYP26A1, is essential for normal hindbrain patterning, vertebral identity, and development of posterior structures. Genes Dev 15: 226-240.
    • (2001) Genes Dev , vol.15 , pp. 226-240
    • Abu-Abed, S.1    Dolle, P.2    Metzger, D.3    Beckett, B.4    Chambon, P.5    Petkovich, M.6
  • 2
    • 70350217448 scopus 로고    scopus 로고
    • Hox genes and segmentation of the hindbrain and axial skeleton
    • Alexander T, Nolte C, Krumlauf R. 2009. Hox genes and segmentation of the hindbrain and axial skeleton. Annu Rev Cell Dev Biol 25: 431-456.
    • (2009) Annu Rev Cell Dev Biol , vol.25 , pp. 431-456
    • Alexander, T.1    Nolte, C.2    Krumlauf, R.3
  • 4
    • 67749106610 scopus 로고    scopus 로고
    • Synchronous and stochastic patterns of gene activation in the Drosophila embryo
    • Boettiger AN, Levine M. 2009. Synchronous and stochastic patterns of gene activation in the Drosophila embryo. Science 325: 471-473.
    • (2009) Science , vol.325 , pp. 471-473
    • Boettiger, A.N.1    Levine, M.2
  • 6
    • 0035943710 scopus 로고    scopus 로고
    • Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo
    • Chao SH, Price DH. 2001. Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo. J Biol Chem 276: 31793-31799.
    • (2001) J Biol Chem , vol.276 , pp. 31793-31799
    • Chao, S.H.1    Price, D.H.2
  • 7
    • 34547563511 scopus 로고    scopus 로고
    • Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation
    • Cheng B, Price DH. 2007. Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation. J Biol Chem 282: 21901-21912.
    • (2007) J Biol Chem , vol.282 , pp. 21901-21912
    • Cheng, B.1    Price, D.H.2
  • 8
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core LJ, Waterfall JJ, Lis JT. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322: 1845-1848.
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 9
    • 76349090199 scopus 로고    scopus 로고
    • CDK8 is a positive regulator of transcriptional elongation within the serum response network
    • Donner AJ, Ebmeier CC, Taatjes DJ, Espinosa JM. 2010. CDK8 is a positive regulator of transcriptional elongation within the serum response network. Nat Struct Mol Biol 17: 194-201.
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 194-201
    • Donner, A.J.1    Ebmeier, C.C.2    Taatjes, D.J.3    Espinosa, J.M.4
  • 10
    • 0024341769 scopus 로고
    • The structural and functional organization of the murine HOX gene family resembles that of Drosophila homeotic genes
    • Duboule D, Dolle P. 1989. The structural and functional organization of the murine HOX gene family resembles that of Drosophila homeotic genes. EMBO J 8: 1497-1505.
    • (1989) EMBO J , vol.8 , pp. 1497-1505
    • Duboule, D.1    Dolle, P.2
  • 11
    • 51549116267 scopus 로고    scopus 로고
    • Retinoic acid synthesis and signaling during early organogenesis
    • Duester G. 2008. Retinoic acid synthesis and signaling during early organogenesis. Cell 134: 921-931.
    • (2008) Cell , vol.134 , pp. 921-931
    • Duester, G.1
  • 12
    • 70249104647 scopus 로고    scopus 로고
    • Defining mechanisms that regulate RNA polymerase II transcription in vivo
    • Fuda NJ, Ardehali MB, Lis JT. 2009. Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature 461: 186-192.
    • (2009) Nature , vol.461 , pp. 186-192
    • Fuda, N.J.1    Ardehali, M.B.2    Lis, J.T.3
  • 13
    • 79953163396 scopus 로고    scopus 로고
    • Lessons on transcriptional control from the serum response network
    • Galbraith MD, Espinosa JM. 2011. Lessons on transcriptional control from the serum response network. Curr Opin Genet Dev 21: 160-166.
    • (2011) Curr Opin Genet Dev , vol.21 , pp. 160-166
    • Galbraith, M.D.1    Espinosa, J.M.2
  • 14
    • 0034883605 scopus 로고    scopus 로고
    • Synergy between Hoxa1 and Hoxb1: The relationship between arch patterning and the generation of cranial neural crest
    • Gavalas A, Trainor P, Ariza-McNaughton L, Krumlauf R. 2001. Synergy between Hoxa1 and Hoxb1: the relationship between arch patterning and the generation of cranial neural crest. Development 128: 3017-3027.
    • (2001) Development , vol.128 , pp. 3017-3027
    • Gavalas, A.1    Trainor, P.2    Ariza-McNaughton, L.3    Krumlauf, R.4
  • 15
    • 0024589805 scopus 로고
    • The murine and Drosophila homeobox gene complexes have common features of organization and expression
    • Graham A, Papalopulu N, Krumlauf R. 1989. The murine and Drosophila homeobox gene complexes have common features of organization and expression. Cell 57: 367-378.
    • (1989) Cell , vol.57 , pp. 367-378
    • Graham, A.1    Papalopulu, N.2    Krumlauf, R.3
  • 16
    • 79957491918 scopus 로고    scopus 로고
    • New insights into the control of HIV-1 transcription: When Tat meets the 7SK snRNP and super elongation complex (SEC)
    • He N, Zhou Q. 2011. New insights into the control of HIV-1 transcription: when Tat meets the 7SK snRNP and super elongation complex (SEC). J Neuroimmune Pharmacol 6: 260-268.
    • (2011) J Neuroimmune Pharmacol , vol.6 , pp. 260-268
    • He, N.1    Zhou, Q.2
  • 17
    • 77951959240 scopus 로고    scopus 로고
    • HIV-1 Tat and host AFF4 recruit two transcription elongation factors into a bifunctional complex for coordinated activation of HIV-1 transcription
    • He N, Liu M, Hsu J, Xue Y, Chou S, Burlingame A, Krogan NJ, Alber T, Zhou Q. 2010. HIV-1 Tat and host AFF4 recruit two transcription elongation factors into a bifunctional complex for coordinated activation of HIV-1 transcription. Mol Cell 38: 428-438.
    • (2010) Mol Cell , vol.38 , pp. 428-438
    • He, N.1    Liu, M.2    Hsu, J.3    Xue, Y.4    Chou, S.5    Burlingame, A.6    Krogan, N.J.7    Alber, T.8    Zhou, Q.9
  • 18
    • 0028290825 scopus 로고
    • Control of RNA initiation and elongation at the HIV-1 promoter
    • Jones KA, Peterlin BM. 1994. Control of RNA initiation and elongation at the HIV-1 promoter. Annu Rev Biochem 63: 717-743.
    • (1994) Annu Rev Biochem , vol.63 , pp. 717-743
    • Jones, K.A.1    Peterlin, B.M.2
  • 19
    • 22544453857 scopus 로고    scopus 로고
    • ELL-associated factors 1 and 2 are positive regulators of RNA polymerase II elongation factor ELL
    • Kong SE, Banks CA, Shilatifard A, Conaway JW, Conaway RC. 2005. ELL-associated factors 1 and 2 are positive regulators of RNA polymerase II elongation factor ELL. Proc Natl Acad Sci 102: 10094-10098.
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 10094-10098
    • Kong, S.E.1    Banks, C.A.2    Shilatifard, A.3    Conaway, J.W.4    Conaway, R.C.5
  • 20
    • 79955795581 scopus 로고    scopus 로고
    • Paused RNA polymerase II as a developmental checkpoint
    • Levine M. 2011. Paused RNA polymerase II as a developmental checkpoint. Cell 145: 502-511.
    • (2011) Cell , vol.145 , pp. 502-511
    • Levine, M.1
  • 23
    • 0029011873 scopus 로고
    • Purification of P-TEFb, a transcription factor required for the transition into productive elongation
    • Marshall NF, Price DH. 1995. Purification of P-TEFb, a transcription factor required for the transition into productive elongation. J Biol Chem 270: 12335-12338.
    • (1995) J Biol Chem , vol.270 , pp. 12335-12338
    • Marshall, N.F.1    Price, D.H.2
  • 25
    • 0026504525 scopus 로고
    • Homeobox genes and axial patterning
    • McGinnis W, Krumlauf R. 1992. Homeobox genes and axial patterning. Cell 68: 283-302.
    • (1992) Cell , vol.68 , pp. 283-302
    • McGinnis, W.1    Krumlauf, R.2
  • 26
    • 77957128551 scopus 로고    scopus 로고
    • Licensed to elongate: A molecular mechanism for MLL-based leukaemogenesis
    • Mohan M, Lin C, Guest E, Shilatifard A. 2010. Licensed to elongate: a molecular mechanism for MLL-based leukaemogenesis. Nat Rev Cancer 10: 721-728.
    • (2010) Nat Rev Cancer , vol.10 , pp. 721-728
    • Mohan, M.1    Lin, C.2    Guest, E.3    Shilatifard, A.4
  • 28
    • 45849129033 scopus 로고    scopus 로고
    • Promoter-proximal Pol II: When stalling speeds things up
    • Nechaev S, Adelman K. 2008. Promoter-proximal Pol II: when stalling speeds things up. Cell Cycle 7: 1539-1544.
    • (2008) Cell Cycle , vol.7 , pp. 1539-1544
    • Nechaev, S.1    Adelman, K.2
  • 29
    • 78650566210 scopus 로고    scopus 로고
    • Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation
    • Nechaev S, Adelman K. 2011. Pol II waiting in the starting gates: regulating the transition from transcription initiation into productive elongation. Biochim Biophys Acta 1809: 34-45.
    • (2011) Biochim Biophys Acta , vol.1809 , pp. 34-45
    • Nechaev, S.1    Adelman, K.2
  • 30
    • 74549132843 scopus 로고    scopus 로고
    • Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
    • Nechaev S, Fargo DC, dos Santos G, Liu L, Gao Y, Adelman K. 2010. Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila. Science 327: 335-338.
    • (2010) Science , vol.327 , pp. 335-338
    • Nechaev, S.1    Fargo, D.C.2    dos Santos, G.3    Liu, L.4    Gao, Y.5    Adelman, K.6
  • 31
    • 33746403681 scopus 로고    scopus 로고
    • Controlling the elongation phase of transcription with P-TEFb
    • Peterlin BM, Price DH. 2006. Controlling the elongation phase of transcription with P-TEFb. Mol Cell 23: 297-305.
    • (2006) Mol Cell , vol.23 , pp. 297-305
    • Peterlin, B.M.1    Price, D.H.2
  • 32
    • 0029055810 scopus 로고
    • Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx
    • Popperl H, Bienz M, Studer M, Chan SK, Aparicio S, Brenner S, Mann RS, Krumlauf R. 1995. Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx. Cell 81: 1031-1042.
    • (1995) Cell , vol.81 , pp. 1031-1042
    • Popperl, H.1    Bienz, M.2    Studer, M.3    Chan, S.K.4    Aparicio, S.5    Brenner, S.6    Mann, R.S.7    Krumlauf, R.8
  • 34
    • 0024282827 scopus 로고
    • The RNA polymerase II molecule at the 59 end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged
    • Rougvie AE, Lis JT. 1988. The RNA polymerase II molecule at the 59 end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell 54: 795-804.
    • (1988) Cell , vol.54 , pp. 795-804
    • Rougvie, A.E.1    Lis, J.T.2
  • 35
    • 0035862976 scopus 로고    scopus 로고
    • The retinoic acid-inactivating enzyme CYP26 is essential for establishing an uneven distribution of retinoic acid along the anterio-posterior axis within the mouse embryo
    • Sakai Y, Meno C, Fujii H, Nishino J, Shiratori H, Saijoh Y, Rossant J, Hamada H. 2001. The retinoic acid-inactivating enzyme CYP26 is essential for establishing an uneven distribution of retinoic acid along the anterio-posterior axis within the mouse embryo. Genes Dev 15: 213-225.
    • (2001) Genes Dev , vol.15 , pp. 213-225
    • Sakai, Y.1    Meno, C.2    Fujii, H.3    Nishino, J.4    Shiratori, H.5    Saijoh, Y.6    Rossant, J.7    Hamada, H.8
  • 36
    • 0031763366 scopus 로고    scopus 로고
    • Factors regulating the transcriptional elongation activity of RNA polymerase II
    • Shilatifard A. 1998. Factors regulating the transcriptional elongation activity of RNA polymerase II. FASEB J 12: 1437-1446.
    • (1998) FASEB J , vol.12 , pp. 1437-1446
    • Shilatifard, A.1
  • 39
    • 0035412402 scopus 로고    scopus 로고
    • EAF1, a novel ELL-associated factor that is delocalized by expression of the MLL-ELL fusion protein
    • Simone F, Polak PE, Kaberlein JJ, Luo RT, Levitan DA, Thirman MJ. 2001. EAF1, a novel ELL-associated factor that is delocalized by expression of the MLL-ELL fusion protein. Blood 98: 201-209.
    • (2001) Blood , vol.98 , pp. 201-209
    • Simone, F.1    Polak, P.E.2    Kaberlein, J.J.3    Luo, R.T.4    Levitan, D.A.5    Thirman, M.J.6
  • 40
    • 5444225805 scopus 로고    scopus 로고
    • Elongation by RNA polymerase II: The short and long of it
    • Sims RJ 3rd, Belotserkovskaya R, Reinberg D. 2004. Elongation by RNA polymerase II: the short and long of it. Genes Dev 18: 2437-2468.
    • (2004) Genes Dev , vol.18 , pp. 2437-2468
    • Sims III, R.J.1    Belotserkovskaya, R.2    Reinberg, D.3
  • 41
    • 79954552505 scopus 로고    scopus 로고
    • The super elongation complex (SEC) and MLL in development and disease
    • Smith E, Lin C, Shilatifard A. 2011. The super elongation complex (SEC) and MLL in development and disease. Genes Dev 25: 661-672.
    • (2011) Genes Dev , vol.25 , pp. 661-672
    • Smith, E.1    Lin, C.2    Shilatifard, A.3
  • 42
    • 77951954237 scopus 로고    scopus 로고
    • HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP
    • Sobhian B, Laguette N, Yatim A, Nakamura M, Levy Y, Kiernan R, Benkirane M. 2010. HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP. Mol Cell 38: 439-451.
    • (2010) Mol Cell , vol.38 , pp. 439-451
    • Sobhian, B.1    Laguette, N.2    Yatim, A.3    Nakamura, M.4    Levy, Y.5    Kiernan, R.6    Benkirane, M.7
  • 45
    • 0028135353 scopus 로고
    • Cloning of ELL, a gene that fuses to MLL in a t(11;19)(q23;p13.1) in acute myeloid leukemia
    • Thirman MJ, Levitan DA, Kobayashi H, Simon MC, Rowley JD. 1994. Cloning of ELL, a gene that fuses to MLL in a t(11;19)(q23;p13.1) in acute myeloid leukemia. Proc Natl Acad Sci 91: 12110-12114.
    • (1994) Proc Natl Acad Sci , vol.91 , pp. 12110-12114
    • Thirman, M.J.1    Levitan, D.A.2    Kobayashi, H.3    Simon, M.C.4    Rowley, J.D.5
  • 46
    • 71949107301 scopus 로고    scopus 로고
    • Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II
    • Wang P, Lin C, Smith ER, Guo H, Sanderson BW, Wu M, Gogol M, Alexander T, Seidel C, Wiedemann LM, et al. 2009. Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II. Mol Cell Biol 29: 6074-6085.
    • (2009) Mol Cell Biol , vol.29 , pp. 6074-6085
    • Wang, P.1    Lin, C.2    Smith, E.R.3    Guo, H.4    Sanderson, B.W.5    Wu, M.6    Gogol, M.7    Alexander, T.8    Seidel, C.9    Wiedemann, L.M.10
  • 47
    • 0032548918 scopus 로고    scopus 로고
    • A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA
    • Wei P, Garber ME, Fang SM, Fischer WH, Jones KA. 1998. A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA. Cell 92: 451-462.
    • (1998) Cell , vol.92 , pp. 451-462
    • Wei, P.1    Garber, M.E.2    Fang, S.M.3    Fischer, W.H.4    Jones, K.A.5
  • 48
    • 0031707751 scopus 로고    scopus 로고
    • Alteration of nucleosome structure as a mechanism of transcriptional regulation
    • Workman JL, Kingston RE. 1998. Alteration of nucleosome structure as a mechanism of transcriptional regulation. Annu Rev Biochem 67: 545-579.
    • (1998) Annu Rev Biochem , vol.67 , pp. 545-579
    • Workman, J.L.1    Kingston, R.E.2
  • 49
    • 0033515521 scopus 로고    scopus 로고
    • NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
    • Yamaguchi Y, Takagi T, Wada T, Yano K, Furuya A, Sugimoto S, Hasegawa J, Handa H. 1999. NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell 97: 41-51.
    • (1999) Cell , vol.97 , pp. 41-51
    • Yamaguchi, Y.1    Takagi, T.2    Wada, T.3    Yano, K.4    Furuya, A.5    Sugimoto, S.6    Hasegawa, J.7    Handa, H.8
  • 50
    • 23744467035 scopus 로고    scopus 로고
    • Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4
    • Yang Z, Yik JH, Chen R, He N, Jang MK, Ozato K, Zhou Q. 2005. Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4. Mol Cell 19: 535-545.
    • (2005) Mol Cell , vol.19 , pp. 535-545
    • Yang, Z.1    Yik, J.H.2    Chen, R.3    He, N.4    Jang, M.K.5    Ozato, K.6    Zhou, Q.7
  • 52
    • 33749234198 scopus 로고    scopus 로고
    • The Yin and Yang of P-TEFb regulation: Implications for human immunodeficiency virus gene expression and global control of cell growth and differentiation
    • Zhou Q, Yik JH. 2006. The Yin and Yang of P-TEFb regulation: implications for human immunodeficiency virus gene expression and global control of cell growth and differentiation. Microbiol Mol Biol Rev 70: 646-659.
    • (2006) Microbiol Mol Biol Rev , vol.70 , pp. 646-659
    • Zhou, Q.1    Yik, J.H.2
  • 54
    • 70149112313 scopus 로고    scopus 로고
    • Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation
    • Zippo A, Serafini R, Rocchigiani M, Pennacchini S, Krepelova A, Oliviero S. 2009. Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation. Cell 138: 1122-1136.
    • (2009) Cell , vol.138 , pp. 1122-1136
    • Zippo, A.1    Serafini, R.2    Rocchigiani, M.3    Pennacchini, S.4    Krepelova, A.5    Oliviero, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.