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Volumn 7, Issue 5, 2012, Pages

Evolutionary conservation and network structure characterize genes of phenotypic relevance for mitosis in human

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL CYCLE; CONTROLLED STUDY; GENE IDENTIFICATION; GENE SILENCING; GENETIC ANALYSIS; GENETIC CONSERVATION; GENOTYPE; HUMAN; HUMAN CELL; MITOSIS; MOLECULAR INTERACTION; NONHUMAN; PHENOTYPE; PROTEIN INTERACTION; PROTEIN LOCALIZATION; PROTEIN MOTIF; BIOLOGY; CELL CYCLE CHECKPOINT; GENETIC ASSOCIATION; GENETICS; HELA CELL; METHODOLOGY; MOLECULAR EVOLUTION; PROTEIN PROTEIN INTERACTION; SACCHAROMYCES CEREVISIAE;

EID: 84860479667     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036488     Document Type: Article
Times cited : (4)

References (69)
  • 1
    • 38649138295 scopus 로고    scopus 로고
    • A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans
    • Lee I, Lehner B, Crombie C, Wong W, Fraser AG, et al. (2008) A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. Nature genetics 40: 181-188.
    • (2008) Nature Genetics , vol.40 , pp. 181-188
    • Lee, I.1    Lehner, B.2    Crombie, C.3    Wong, W.4    Fraser, A.G.5
  • 2
    • 77649213364 scopus 로고    scopus 로고
    • How to understand the cell by breaking it: network analysis of gene perturbation screens
    • Markowetz F, (2010) How to understand the cell by breaking it: network analysis of gene perturbation screens. PLoS computational biology 6.
    • (2010) PLoS Computational Biology , vol.6
    • Markowetz, F.1
  • 3
    • 51349094325 scopus 로고    scopus 로고
    • Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution
    • Haerty W, Artieri C, Khezri N, Singh RS, Gupta BP, (2008) Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution. BMC genomics 9: 399.
    • (2008) BMC Genomics , vol.9 , pp. 399
    • Haerty, W.1    Artieri, C.2    Khezri, N.3    Singh, R.S.4    Gupta, B.P.5
  • 5
    • 49249121601 scopus 로고    scopus 로고
    • Highly conserved gene order and numerous novel repetitive elements in genomic regions linked to wing pattern variation in Heliconius butterflies
    • Papa R, Morrison CM, Walters JR, Counterman BA, Chen R, et al. (2008) Highly conserved gene order and numerous novel repetitive elements in genomic regions linked to wing pattern variation in Heliconius butterflies. BMC genomics 9: 345.
    • (2008) BMC Genomics , vol.9 , pp. 345
    • Papa, R.1    Morrison, C.M.2    Walters, J.R.3    Counterman, B.A.4    Chen, R.5
  • 6
    • 79952495788 scopus 로고    scopus 로고
    • Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize
    • Schnable JC, Freeling M, (2011) Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize. PloS one 6.
    • (2011) PloS One , vol.6
    • Schnable, J.C.1    Freeling, M.2
  • 7
    • 0032611229 scopus 로고    scopus 로고
    • Evolutionary dissociations between homologous genes and homologous structures
    • discussion 203-206
    • Wray GA, (1999) Evolutionary dissociations between homologous genes and homologous structures. Novartis Foundation symposium 222: 189-203; discussion 203-206.
    • (1999) Novartis Foundation Symposium , vol.222 , pp. 189-203
    • Wray, G.A.1
  • 8
    • 79953297776 scopus 로고    scopus 로고
    • Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures
    • Alvarez-Ponce D, Aguadé M, Rozas J, (2011) Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures. Genome biology and evolution 3: 87-101.
    • (2011) Genome Biology and Evolution , vol.3 , pp. 87-101
    • Alvarez-Ponce, D.1    Aguadé, M.2    Rozas, J.3
  • 9
    • 12444301754 scopus 로고    scopus 로고
    • Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications
    • Berg J, Lässig M, Wagner A, (2004) Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications. BMC evolutionary biology 4: 51.
    • (2004) BMC Evolutionary Biology , vol.4 , pp. 51
    • Berg, J.1    Lässig, M.2    Wagner, A.3
  • 11
    • 78650467091 scopus 로고    scopus 로고
    • Molecular evolution and network-level analysis of the N-glycosylation metabolic pathway across primates
    • Montanucci L, Laayouni H, Dall'Olio GM, Bertranpetit J, (2011) Molecular evolution and network-level analysis of the N-glycosylation metabolic pathway across primates. Molecular biology and evolution 28: 813-823.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 813-823
    • Montanucci, L.1    Laayouni, H.2    Dall'Olio, G.M.3    Bertranpetit, J.4
  • 12
    • 6944224155 scopus 로고    scopus 로고
    • Regulatory evolution across the protein interaction network
    • Lemos B, Meiklejohn CD, Hartl DL, (2004) Regulatory evolution across the protein interaction network. Nature genetics 36: 1059-1060.
    • (2004) Nature Genetics , vol.36 , pp. 1059-1060
    • Lemos, B.1    Meiklejohn, C.D.2    Hartl, D.L.3
  • 13
    • 17744376961 scopus 로고    scopus 로고
    • Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions
    • Lemos B, Bettencourt BR, Meiklejohn CD, Hartl DL, (2005) Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions. Molecular biology and evolution 22: 1345-1354.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1345-1354
    • Lemos, B.1    Bettencourt, B.R.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 14
    • 0141484611 scopus 로고    scopus 로고
    • Evolutionary conservation of motif constituents in the yeast protein interaction network
    • Wuchty S, Oltvai ZN, Barabási A-L, (2003) Evolutionary conservation of motif constituents in the yeast protein interaction network. Nature genetics 35: 176-179.
    • (2003) Nature Genetics , vol.35 , pp. 176-179
    • Wuchty, S.1    Oltvai, Z.N.2    Barabási, A.-L.3
  • 15
    • 12344323594 scopus 로고    scopus 로고
    • Conserved network motifs allow protein-protein interaction prediction
    • Albert I, Albert R, (2004) Conserved network motifs allow protein-protein interaction prediction. Bioinformatics 20: 3346-3352.
    • (2004) Bioinformatics , vol.20 , pp. 3346-3352
    • Albert, I.1    Albert, R.2
  • 18
    • 77950387346 scopus 로고    scopus 로고
    • Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes
    • Neumann B, Walter T, Hériché J-K, Bulkescher J, Erfle H, et al. (2010) Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature 464: 721-727.
    • (2010) Nature , vol.464 , pp. 721-727
    • Neumann, B.1    Walter, T.2    Hériché, J.-K.3    Bulkescher, J.4    Erfle, H.5
  • 19
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature genetics 25: 25-29.
    • (2000) Nature Genetics , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5
  • 22
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of "small-world" networks
    • Watts DJ, Strogatz SH, (1998) Collective dynamics of "small-world" networks. Nature 393: 440-442.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 26
    • 0031946338 scopus 로고    scopus 로고
    • Increased polyploidy, delayed mitosis and reduced protein phosphatase-1 activity associated with excess copper in the Long Evans Cinnamon rat
    • Yamada T, Sogawa K, Kim JK, Izumi K, Suzuki Y, et al. (1998) Increased polyploidy, delayed mitosis and reduced protein phosphatase-1 activity associated with excess copper in the Long Evans Cinnamon rat. Research communications in molecular pathology and pharmacology 99: 283-304.
    • (1998) Research Communications in Molecular Pathology and Pharmacology , vol.99 , pp. 283-304
    • Yamada, T.1    Sogawa, K.2    Kim, J.K.3    Izumi, K.4    Suzuki, Y.5
  • 27
    • 34548222737 scopus 로고    scopus 로고
    • Evolution of cell cycle control: same molecular machines, different regulation
    • de Lichtenberg U, Jensen TS, Brunak S, Bork P, Jensen LJ, (2007) Evolution of cell cycle control: same molecular machines, different regulation. Cell cycle 6: 1819-1825.
    • (2007) Cell Cycle , vol.6 , pp. 1819-1825
    • de Lichtenberg, U.1    Jensen, T.S.2    Brunak, S.3    Bork, P.4    Jensen, L.J.5
  • 28
    • 33749535603 scopus 로고    scopus 로고
    • Co-evolution of transcriptional and post-translational cell-cycle regulation
    • Jensen LJ, Jensen TS, de Lichtenberg U, Brunak S, Bork P, (2006) Co-evolution of transcriptional and post-translational cell-cycle regulation. Nature 443: 594-597.
    • (2006) Nature , vol.443 , pp. 594-597
    • Jensen, L.J.1    Jensen, T.S.2    de Lichtenberg, U.3    Brunak, S.4    Bork, P.5
  • 29
  • 30
    • 4644326931 scopus 로고    scopus 로고
    • Genomic analysis of regulatory network dynamics reveals large topological changes
    • Luscombe NM, Madan Babu M, Yu H, Snyder M, Teichmann SA, et al. (2004) Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431: 308-312.
    • (2004) Nature , vol.431 , pp. 308-312
    • Luscombe, N.M.1    Madan Babu, M.2    Yu, H.3    Snyder, M.4    Teichmann, S.A.5
  • 31
    • 2942552376 scopus 로고    scopus 로고
    • Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
    • Dobrin R, Beg QK, Barabási A-L, Oltvai ZN, (2004) Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network. BMC bioinformatics 5: 10.
    • (2004) BMC Bioinformatics , vol.5 , pp. 10
    • Dobrin, R.1    Beg, Q.K.2    Barabási, A.-L.3    Oltvai, Z.N.4
  • 32
    • 0037743679 scopus 로고    scopus 로고
    • Convergent evolution of gene circuits
    • Conant GC, Wagner A, (2003) Convergent evolution of gene circuits. Nature genetics 34: 264-266.
    • (2003) Nature Genetics , vol.34 , pp. 264-266
    • Conant, G.C.1    Wagner, A.2
  • 34
    • 77957277053 scopus 로고    scopus 로고
    • Early Career Research Award Lecture. Structure, evolution and dynamics of transcriptional regulatory networks
    • Babu MM, (2010) Early Career Research Award Lecture. Structure, evolution and dynamics of transcriptional regulatory networks. Biochemical Society transactions 38: 1155-1178.
    • (2010) Biochemical Society Transactions , vol.38 , pp. 1155-1178
    • Babu, M.M.1
  • 35
    • 27844551326 scopus 로고    scopus 로고
    • Dynamic properties of network motifs contribute to biological network organization
    • Prill RJ, Iglesias PA, Levchenko A, (2005) Dynamic properties of network motifs contribute to biological network organization. PLoS biology 3.
    • (2005) PLoS Biology , vol.3
    • Prill, R.J.1    Iglesias, P.A.2    Levchenko, A.3
  • 36
    • 47549083849 scopus 로고    scopus 로고
    • Positive feedback sharpens the anaphase switch
    • Holt LJ, Krutchinsky AN, Morgan DO, (2008) Positive feedback sharpens the anaphase switch. Nature 454: 353-357.
    • (2008) Nature , vol.454 , pp. 353-357
    • Holt, L.J.1    Krutchinsky, A.N.2    Morgan, D.O.3
  • 37
    • 47549106474 scopus 로고    scopus 로고
    • Positive feedback of G1 cyclins ensures coherent cell cycle entry
    • Skotheim JM, Di Talia S, Siggia ED, Cross FR, (2008) Positive feedback of G1 cyclins ensures coherent cell cycle entry. Nature 454: 291-296.
    • (2008) Nature , vol.454 , pp. 291-296
    • Skotheim, J.M.1    Di Talia, S.2    Siggia, E.D.3    Cross, F.R.4
  • 38
    • 47549097146 scopus 로고    scopus 로고
    • Systems biology: On the cell cycle and its switches
    • Santos SDM, Ferrell JE, (2008) Systems biology: On the cell cycle and its switches. Nature 454: 288-289.
    • (2008) Nature , vol.454 , pp. 288-289
    • Santos, S.D.M.1    Ferrell, J.E.2
  • 40
    • 46849090495 scopus 로고    scopus 로고
    • Robust, tunable biological oscillations from interlinked positive and negative feedback loops
    • Tsai TY-C, Choi YS, Ma W, Pomerening JR, Tang C, et al. (2008) Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science 321: 126-129.
    • (2008) Science , vol.321 , pp. 126-129
    • Tsai, T.Y.-C.1    Choi, Y.S.2    Ma, W.3    Pomerening, J.R.4    Tang, C.5
  • 41
    • 34548105391 scopus 로고    scopus 로고
    • Mitotic entry: a matter of oscillating destruction
    • Bassermann F, Peschel C, Duyster J, (2005) Mitotic entry: a matter of oscillating destruction. Cell cycle 4: 1515-1517.
    • (2005) Cell Cycle , vol.4 , pp. 1515-1517
    • Bassermann, F.1    Peschel, C.2    Duyster, J.3
  • 42
    • 60749121708 scopus 로고    scopus 로고
    • Cdk1 and cell morphology: connections and directions
    • Moseley JB, Nurse P, (2009) Cdk1 and cell morphology: connections and directions. Current opinion in cell biology 21: 82-88.
    • (2009) Current Opinion in Cell Biology , vol.21 , pp. 82-88
    • Moseley, J.B.1    Nurse, P.2
  • 43
    • 0032573374 scopus 로고    scopus 로고
    • Control of cyclin ubiquitination by CDK-regulated binding of Hct1 to the anaphase promoting complex
    • Zachariae W, Schwab M, Nasmyth K, Seufert W, (1998) Control of cyclin ubiquitination by CDK-regulated binding of Hct1 to the anaphase promoting complex. Science 282: 1721-1724.
    • (1998) Science , vol.282 , pp. 1721-1724
    • Zachariae, W.1    Schwab, M.2    Nasmyth, K.3    Seufert, W.4
  • 44
    • 72949097617 scopus 로고    scopus 로고
    • Regulation of the endothelial cell cycle by the ubiquitin-proteasome system
    • Fasanaro P, Capogrossi MC, Martelli F, (2010) Regulation of the endothelial cell cycle by the ubiquitin-proteasome system. Cardiovascular research 85: 272-280.
    • (2010) Cardiovascular Research , vol.85 , pp. 272-280
    • Fasanaro, P.1    Capogrossi, M.C.2    Martelli, F.3
  • 47
    • 34248374256 scopus 로고    scopus 로고
    • Activation of MAP kinase p38 is critical for the cell-cycle-controlled suppressor function of regulatory T cells
    • Adler HS, Kubsch S, Graulich E, Ludwig S, Knop J, et al. (2007) Activation of MAP kinase p38 is critical for the cell-cycle-controlled suppressor function of regulatory T cells. Blood 109: 4351-4359.
    • (2007) Blood , vol.109 , pp. 4351-4359
    • Adler, H.S.1    Kubsch, S.2    Graulich, E.3    Ludwig, S.4    Knop, J.5
  • 48
    • 0035089027 scopus 로고    scopus 로고
    • Mitogen activated protein kinase plays a significant role in metaphase II arrest, spindle morphology, and maintenance of maturation promoting factor activity in bovine oocytes
    • Gordo AC, He CL, Smith S, Fissore RA, (2001) Mitogen activated protein kinase plays a significant role in metaphase II arrest, spindle morphology, and maintenance of maturation promoting factor activity in bovine oocytes. Molecular reproduction and development 59: 106-114.
    • (2001) Molecular Reproduction and Development , vol.59 , pp. 106-114
    • Gordo, A.C.1    He, C.L.2    Smith, S.3    Fissore, R.A.4
  • 49
    • 11344286593 scopus 로고    scopus 로고
    • MAPKAP kinase-2 is a cell cycle checkpoint kinase that regulates the G2/M transition and S phase progression in response to UV irradiation
    • Manke IA, Nguyen A, Lim D, Stewart MQ, Elia AEH, et al. (2005) MAPKAP kinase-2 is a cell cycle checkpoint kinase that regulates the G2/M transition and S phase progression in response to UV irradiation. Molecular cell 17: 37-48.
    • (2005) Molecular Cell , vol.17 , pp. 37-48
    • Manke, I.A.1    Nguyen, A.2    Lim, D.3    Stewart, M.Q.4    Elia, A.E.H.5
  • 50
    • 34249105792 scopus 로고    scopus 로고
    • BubR1 deficiency results in enhanced activation of MEK and ERKs upon microtubule stresses
    • Yang YL, Duan Q, Guo TB, Wang XX, Ruan Q, et al. (2007) BubR1 deficiency results in enhanced activation of MEK and ERKs upon microtubule stresses. Cell proliferation 40: 397-410.
    • (2007) Cell Proliferation , vol.40 , pp. 397-410
    • Yang, Y.L.1    Duan, Q.2    Guo, T.B.3    Wang, X.X.4    Ruan, Q.5
  • 53
    • 77955747085 scopus 로고    scopus 로고
    • The choice between p53-induced senescence and quiescence is determined in part by the mTOR pathway
    • Korotchkina LG, Leontieva OV, Bukreeva EI, Demidenko ZN, Gudkov AV, et al. (2010) The choice between p53-induced senescence and quiescence is determined in part by the mTOR pathway. Aging 2: 344-352.
    • (2010) Aging , vol.2 , pp. 344-352
    • Korotchkina, L.G.1    Leontieva, O.V.2    Bukreeva, E.I.3    Demidenko, Z.N.4    Gudkov, A.V.5
  • 54
    • 34347376389 scopus 로고    scopus 로고
    • Depletion of the nucleolar protein nucleostemin causes G1 cell cycle arrest via the p53 pathway
    • Ma H, Pederson T, (2007) Depletion of the nucleolar protein nucleostemin causes G1 cell cycle arrest via the p53 pathway. Molecular biology of the cell 18: 2630-2635.
    • (2007) Molecular Biology of the Cell , vol.18 , pp. 2630-2635
    • Ma, H.1    Pederson, T.2
  • 55
    • 79955830260 scopus 로고    scopus 로고
    • p53 stabilization induces apoptosis in chronic myeloid leukemia blast crisis cells
    • Peterson LF, Mitrikeska E, Giannola D, Lui Y, Sun H, et al. (2011) p53 stabilization induces apoptosis in chronic myeloid leukemia blast crisis cells. Leukemia 25: 761-769.
    • (2011) Leukemia , vol.25 , pp. 761-769
    • Peterson, L.F.1    Mitrikeska, E.2    Giannola, D.3    Lui, Y.4    Sun, H.5
  • 56
    • 18344377030 scopus 로고    scopus 로고
    • The p53 pathway: positive and negative feedback loops
    • Harris SL, Levine AJ, (2005) The p53 pathway: positive and negative feedback loops. Oncogene 24: 2899-2908.
    • (2005) Oncogene , vol.24 , pp. 2899-2908
    • Harris, S.L.1    Levine, A.J.2
  • 60
  • 61
    • 0035985177 scopus 로고    scopus 로고
    • Identification of genes periodically expressed in the human cell cycle and their expression in tumors
    • Whitfield ML, Sherlock G, Saldanha AJ, Murray JI, Ball CA, et al. (2002) Identification of genes periodically expressed in the human cell cycle and their expression in tumors. Molecular biology of the cell 13: 1977-2000.
    • (2002) Molecular Biology of the Cell , vol.13 , pp. 1977-2000
    • Whitfield, M.L.1    Sherlock, G.2    Saldanha, A.J.3    Murray, J.I.4    Ball, C.A.5
  • 63
    • 75549090213 scopus 로고    scopus 로고
    • KEGG for representation and analysis of molecular networks involving diseases and drugs
    • Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M, (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic acids research 38: D355-D360.
    • (2010) Nucleic Acids Research , vol.38
    • Kanehisa, M.1    Goto, S.2    Furumichi, M.3    Tanabe, M.4    Hirakawa, M.5
  • 64
    • 77950525573 scopus 로고    scopus 로고
    • Automatic identification and clustering of chromosome phenotypes in a genome wide RNAi screen by time-lapse imaging
    • Walter T, Held M, Neumann B, Hériché J-K, Conrad C, et al. (2010) Automatic identification and clustering of chromosome phenotypes in a genome wide RNAi screen by time-lapse imaging. Journal of structural biology 170: 1-9.
    • (2010) Journal of Structural Biology , vol.170 , pp. 1-9
    • Walter, T.1    Held, M.2    Neumann, B.3    Hériché, J.-K.4    Conrad, C.5
  • 66
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of Phylogenetics and Evolution in R language
    • Paradis E, Claude J, Strimmer K, (2004) APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 20: 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 69
    • 33646153295 scopus 로고    scopus 로고
    • FANMOD: a tool for fast network motif detection
    • Wernicke S, Rasche F, (2006) FANMOD: a tool for fast network motif detection. Bioinformatics 22: 1152-1153.
    • (2006) Bioinformatics , vol.22 , pp. 1152-1153
    • Wernicke, S.1    Rasche, F.2


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