메뉴 건너뛰기




Volumn 10, Issue 3-4, 2003, Pages 521-536

Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns

Author keywords

Autocorrelation; Cell cycle; Circadian genes; Computational genomics; DNA microarray analysis; Expression profile similarity; Functional genomics; Hausdorff distance; mRNA expression time series; Rhythmic genes

Indexed keywords

DNA;

EID: 0242606443     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/10665270360688165     Document Type: Conference Paper
Times cited : (17)

References (28)
  • 1
    • 0025825976 scopus 로고
    • Cloning DPB3, the gene encoding the third subunit of DNA polymerase II of Saccharomyces cerevisiae
    • Araki, H., Hamatake, R.K., Morrison, A., Johnson, A.L., Johnston, L.H., and Sugino, A. 1991. Cloning DPB3, the gene encoding the third subunit of DNA polymerase II of Saccharomyces cerevisiae. Nucl. Acids Res. 19, 4867-4872.
    • (1991) Nucl. Acids Res. , vol.19 , pp. 4867-4872
    • Araki, H.1    Hamatake, R.K.2    Morrison, A.3    Johnson, A.L.4    Johnston, L.H.5    Sugino, A.6
  • 3
    • 0032511229 scopus 로고    scopus 로고
    • A serum shock induces circadian gene expression in mammalian tissue culture cells
    • Balsalobre, A., Damiola, F., and Schibler, U. 1998. A serum shock induces circadian gene expression in mammalian tissue culture cells. Cell 93, 929-937.
    • (1998) Cell , vol.93 , pp. 929-937
    • Balsalobre, A.1    Damiola, F.2    Schibler, U.3
  • 5
    • 0034821699 scopus 로고    scopus 로고
    • cis Element/transcription factor analysis (cis/TF): A method for discovering transcription factor/cis element relationships
    • Birnbaum, K., Benfey, P.N., and Shasha, D.E. 2001. cis Element/transcription factor analysis (cis/TF): A method for discovering transcription factor/cis element relationships. Genome Res. 11, 1567-1573.
    • (2001) Genome Res. , vol.11 , pp. 1567-1573
    • Birnbaum, K.1    Benfey, P.N.2    Shasha, D.E.3
  • 6
    • 0032522928 scopus 로고    scopus 로고
    • Transcription of multiple cell wall protein-encoding genes in Saccharomyces cerevisiae is deferentially regulated during the cell cycle
    • Caro, L.H., Smits, G.J., van Egmond, P., Chapman, J.W., and Klis, F.M. 1998. Transcription of multiple cell wall protein-encoding genes in Saccharomyces cerevisiae is deferentially regulated during the cell cycle. FEMS Microbiol. Lett. 161, 345-349.
    • (1998) FEMS Microbiol. Lett. , vol.161 , pp. 345-349
    • Caro, L.H.1    Smits, G.J.2    Van Egmond, P.3    Chapman, J.W.4    Klis, F.M.5
  • 7
    • 0024545513 scopus 로고
    • The yeast gene, DBF4, essential for entry into S phase is cell cycle regulated
    • Chapman, J.W., and Johnston, L.H. 1989. The yeast gene, DBF4, essential for entry into S phase is cell cycle regulated. Exp. Cell Res. 180, 419-428.
    • (1989) Exp. Cell Res. , vol.180 , pp. 419-428
    • Chapman, J.W.1    Johnston, L.H.2
  • 11
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen, M., Spellman, P.T., Botstein, D., and Brown, P.O. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. 95(25), 14863-14868.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.1    Spellman, P.T.2    Botstein, D.3    Brown, P.O.4
  • 14
    • 0035861573 scopus 로고    scopus 로고
    • Circadian regulation of diverse gene products revealed by mRNA expression profiling of synchronized fibroblasts
    • Grundschober, C., Delaunay, F., Phlhofer, A., Triqueneaux, G., Laudet, V., Bartfai, T., and Nef, P. 2001. Circadian regulation of diverse gene products revealed by mRNA expression profiling of synchronized fibroblasts. J. Biol. Chem. 276, 46751-46758.
    • (2001) J. Biol. Chem. , vol.276 , pp. 46751-46758
    • Grundschober, C.1    Delaunay, F.2    Phlhofer, A.3    Triqueneaux, G.4    Laudet, V.5    Bartfai, T.6    Nef, P.7
  • 17
    • 0029792380 scopus 로고    scopus 로고
    • Coordinated regulation of gene expression by the cell cycle transcription factor Swi4 and the protein kinase C MAP kinase pathway for yeast cell integrity
    • Igual, J.C., Johnson, A.L., and Johnston, L.H. 1996. Coordinated regulation of gene expression by the cell cycle transcription factor Swi4 and the protein kinase C MAP kinase pathway for yeast cell integrity. EMBO J. 15, 5001-5013.
    • (1996) EMBO J. , vol.15 , pp. 5001-5013
    • Igual, J.C.1    Johnson, A.L.2    Johnston, L.H.3
  • 19
    • 0025304738 scopus 로고
    • Expression of the yeast DNA primase gene, PRI1, is regulated within the mitotic cell cycle and in meiosis
    • Johnston, L.H., White, J.H., Johnson, A.L., Lucchini, G., and Plevani, P 1990. Expression of the yeast DNA primase gene, PRI1, is regulated within the mitotic cell cycle and in meiosis. Mol. Gen. Genet. 221, 44-48.
    • (1990) Mol. Gen. Genet. , vol.221 , pp. 44-48
    • Johnston, L.H.1    White, J.H.2    Johnson, A.L.3    Lucchini, G.4    Plevani, P.5
  • 21
    • 0035977158 scopus 로고    scopus 로고
    • Microarray analysis and organization of circadian gene expression in Drosophila
    • McDonald, M.J., and Rosbash, M. 2001. Microarray analysis and organization of circadian gene expression in Drosophila. Cell 107, 567-578.
    • (2001) Cell , vol.107 , pp. 567-578
    • McDonald, M.J.1    Rosbash, M.2
  • 23
    • 0035108613 scopus 로고    scopus 로고
    • Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis
    • Schaffer, R., Landgraf, J., Accerbi, M., Simon, V., Larson, M., and Wisman, E. 2001. Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis. Plant Cell 13, 113-123.
    • (2001) Plant Cell , vol.13 , pp. 113-123
    • Schaffer, R.1    Landgraf, J.2    Accerbi, M.3    Simon, V.4    Larson, M.5    Wisman, E.6
  • 25
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
    • Spellman, P., Sherlock, G., Zhang, M.Q., Iyer, R.I., Anders, K., Eisen, M.B., Brown, P.O., Botstein, D., and Futcher, B. 1998. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell 9(12), 3273-3297.
    • (1998) Mol. Biol. Cell , vol.9 , Issue.12 , pp. 3273-3297
    • Spellman, P.1    Sherlock, G.2    Zhang, M.Q.3    Iyer, R.I.4    Anders, K.5    Eisen, M.B.6    Brown, P.O.7    Botstein, D.8    Futcher, B.9
  • 26
    • 0026722107 scopus 로고
    • CDC14 of Saccharomyces cerevisiae. Cloning, sequence analysis, and transcription during the cell cycle
    • Wan, J., Xu, H., and Grunstein, M. 1992. CDC14 of Saccharomyces cerevisiae. Cloning, sequence analysis, and transcription during the cell cycle. J. Biol. Chem. 267, 11274-11280.
    • (1992) J. Biol. Chem. , vol.267 , pp. 11274-11280
    • Wan, J.1    Xu, H.2    Grunstein, M.3
  • 27
    • 0023241688 scopus 로고
    • The CDC8 transcript is cell cycle regulated in yeast and is expressed coordinately with CDC9 and CDC21 at a point preceding histone transcription
    • White, J.H., Green, S.R., Barker, D.G., Dumas, L.B., and Johnston, L.H. 1987. The CDC8 transcript is cell cycle regulated in yeast and is expressed coordinately with CDC9 and CDC21 at a point preceding histone transcription. Exp. Cell Res. 171, 223-231.
    • (1987) Exp. Cell Res. , vol.171 , pp. 223-231
    • White, J.H.1    Green, S.R.2    Barker, D.G.3    Dumas, L.B.4    Johnston, L.H.5
  • 28
    • 0035853525 scopus 로고    scopus 로고
    • Molecular mechanisms of the biological clock in cultured fibroblasts
    • Yagita, K., Tamanini, F., van der Horst, G.T.J., and Okamura, H. 2001. Molecular mechanisms of the biological clock in cultured fibroblasts. Science 292, 278-281.
    • (2001) Science , vol.292 , pp. 278-281
    • Yagita, K.1    Tamanini, F.2    Van Der Horst, G.T.J.3    Okamura, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.