Quality assessment of cross-species hybridization of CHO transcriptome on a mouse DNA oligo microarray

Biotechnology and Bioengineering

Volumn 101, Issue 6, 2008, Pages 1359-1365

  Joon, Chong Yee ^a   Wlaschin, Katie Fraass ^a   Song, Hui Chuah ^b   Nissom, Peter Morin ^b   Hu, Wei Shou ^a  

^a University of Minnesota   (United States)

^b AGENCY FOR SCIENCE   (Singapore)

Author keywords

Affymetrix; Chinese hamster ovary cells; CHO; GeneChip; Mammalian cell culture; Microarray; Transcriptome analysis

Indexed keywords

ANIMAL CELL CULTURE; BIOASSAY; CELLS; CYTOLOGY; DNA; GENES; MAMMALS; MICROARRAYS; NUCLEIC ACIDS; ORGANIC ACIDS; PLANTS (BOTANY); SODIUM;

AFFYMETRIX; CHINESE HAMSTER OVARY CELLS; CHO; GENECHIP; MAMMALIAN CELL CULTURE; TRANSCRIPTOME ANALYSIS;

CELL CULTURE;

TRANSCRIPTOME;

ANIMAL CELL; ARTICLE; CHO CELL; DNA HYBRIDIZATION; DNA MICROARRAY; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE;

ANIMALS; CHO CELLS; CRICETINAE; CRICETULUS; GENE EXPRESSION PROFILING; MICE; MICROARRAY ANALYSIS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

CRICETULUS GRISEUS; MAMMALIA;

EID: 56749148174     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.21984     Document Type: Article

References (13)

1. Affymetrix. 2002. GeneChip CustomExpress Array Design Guide.
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215(3):403-410.
3. Baik JY, Lee MS, An SR, Yoon SK, Joo EJ, Kim YH, Park HW, Lee GM. 2006. Initial transcriptome and proteome analyses of low culture temperature-induced expression in CHO cells producing erythropoietin. Biotechnol Bioeng 93(2):361-371.
4. Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. 2003. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31(13):3497-3500.
5. De Leon Gatti M, Wlaschin KF, Nissom PM, Yap M, Hu WS. 2007. Comparative transcriptional analysis of mouse hybridoma and recombinant Chinese hamster ovary cells undergoing butyrate treatment. J Biosci Bioeng 103(1):82-91.
6. Ernst W, Trummer E, Mead J, Bessant C, Strelec H, Katinger H, Hesse F. 2006. Evaluation of a genomics platform for cross-species transcriptome analysis of recombinant CHO cells. Biotechnol J 1(6):639-650.
7. Figueroa B Jr, Ailor E, Osborne D, Hardwick JM, Reff M, Betenbaugh MJ. 2007. Enhanced cell culture performance using inducible anti-apoptotic genes E1B-19K and Aven in the production of a monoclonal antibody with Chinese hamster ovary cells. Biotechnol Bioeng 97(4):877-892.
8. Jayapal KP, Wlaschin KF, Hu W-S, Yap M. 2007. Recombinant protein therapeutics from CHO cells-20 years and counting. Chem Eng Prog 103(10):40.
9. Ji W, Zhou W, Gregg K, Yu N, Davis S, Davis S. 2004. A method for crossspecies gene expression analysis with high-density oligonucleotide arrays. Nucleic Acids Res 32(11):93.
10. Wang Z, Lewis MG, Nau ME, Arnold A, Vahey MT. 2004. Identification and utilization of inter-species conserved (ISC) probesets on Affymetrix human GeneChip platforms for the optimization of the assessment of expression patterns in non human primate (NHP) samples. BMC Bioinform 5:165.
11. Wlaschin KF, Hu WS. 2007. A scaffold for the Chinese hamster genome. Biotechnol Bioeng 98(2):429-439.
12. Wlaschin KF, Nissom PM, Gatti Mde L, Ong PF, Arleen S, Tan KS, Rink A, Cham B, Wong K, Yap M, et al. 2005. EST sequencing for gene discovery in Chinese hamster ovary cells. Biotechnol Bioeng 91(5): 592-606.
13. Yee JC, Gatti M de L, Philp RJ, Yap M, Hu WS. 2008. Genomic and proteomic exploration of CHO and hybridoma cells under sodium butyrate treatment. Biotechnol Bioeng 99(5):1186-1204.