-
1
-
-
0036923694
-
An SSR-based genetic linkage map for perennial ryegrass (Lolium perenne L.)
-
10.1007/s00122-002-0907-3, 12582507
-
Jones ES, Dupal MP, Dumsday JL, Hughes LJ, Forster JW. An SSR-based genetic linkage map for perennial ryegrass (Lolium perenne L.). Theor Appl Genet 2002, 105:577-584. 10.1007/s00122-002-0907-3, 12582507.
-
(2002)
Theor Appl Genet
, vol.105
, pp. 577-584
-
-
Jones, E.S.1
Dupal, M.P.2
Dumsday, J.L.3
Hughes, L.J.4
Forster, J.W.5
-
2
-
-
16244381740
-
QTL mapping of vernalization response in perennial ryegrass (Lolium perenne L.) reveals co-location with an orthologue of wheat VRN1
-
10.1007/s00122-004-1865-8, 15619078
-
Jensen LB, Andersen JR, Frei U, Xing Y, Taylor C, Holm PB, Lübberstedt T. QTL mapping of vernalization response in perennial ryegrass (Lolium perenne L.) reveals co-location with an orthologue of wheat VRN1. Theor Appl Genet 2005, 110:527-536. 10.1007/s00122-004-1865-8, 15619078.
-
(2005)
Theor Appl Genet
, vol.110
, pp. 527-536
-
-
Jensen, L.B.1
Andersen, J.R.2
Frei, U.3
Xing, Y.4
Taylor, C.5
Holm, P.B.6
Lübberstedt, T.7
-
3
-
-
27644590188
-
Four QTLs determine crown rust (Puccinia coronata f. sp. lolii) resistance in a perennial ryegrass (Lolium perenne) population
-
10.1038/sj.hdy.6800729, 16118663
-
Muylle H, Baert J, Van Bockstaele E, Pertijs J, Roldán-Ruiz I. Four QTLs determine crown rust (Puccinia coronata f. sp. lolii) resistance in a perennial ryegrass (Lolium perenne) population. Heredity 2005, 95:348-357. 10.1038/sj.hdy.6800729, 16118663.
-
(2005)
Heredity
, vol.95
, pp. 348-357
-
-
Muylle, H.1
Baert, J.2
Van Bockstaele, E.3
Pertijs, J.4
Roldán-Ruiz, I.5
-
4
-
-
0032827218
-
A high-density molecular map for ryegrass (Lolium perenne) using AFLP markers
-
10.1007/s001220051256, 22665177
-
Bert PF, Charmet G, Sourdille P, Hayward MD, Balfourier F. A high-density molecular map for ryegrass (Lolium perenne) using AFLP markers. Theor Appl Genet 1999, 99:445-452. 10.1007/s001220051256, 22665177.
-
(1999)
Theor Appl Genet
, vol.99
, pp. 445-452
-
-
Bert, P.F.1
Charmet, G.2
Sourdille, P.3
Hayward, M.D.4
Balfourier, F.5
-
5
-
-
0036943559
-
Comparison and integration of genetic maps generated from F2 and BC1-type mapping populations in perennial ryegrass
-
Armstead IP, Turner LB, King IP, Cairns AJ, Humphreys MO. Comparison and integration of genetic maps generated from F2 and BC1-type mapping populations in perennial ryegrass. Plant Breed 2002, 121:501-507.
-
(2002)
Plant Breed
, vol.121
, pp. 501-507
-
-
Armstead, I.P.1
Turner, L.B.2
King, I.P.3
Cairns, A.J.4
Humphreys, M.O.5
-
6
-
-
33644976007
-
QTLs for morphogenetic traits and sensitivity to rusts in Lolium perenne
-
Lorne and Hamilton, Victoria, Australia, Spangenberg G, November 19-24, 2000
-
Barre P, Mi F, Balfourier F, Ghesquière M. QTLs for morphogenetic traits and sensitivity to rusts in Lolium perenne. Proceedings of the Second International Symposium on Molecular Breeding of Forage Crops 2000, 60. Lorne and Hamilton, Victoria, Australia, Spangenberg G, November 19-24, 2000.
-
(2000)
Proceedings of the Second International Symposium on Molecular Breeding of Forage Crops
, pp. 60
-
-
Barre, P.1
Mi, F.2
Balfourier, F.3
Ghesquière, M.4
-
7
-
-
33645083368
-
Lower nitrogen losses through marker assisted selection for nitrogen use efficiency and feeding value (NIMGRASS)
-
van Loo EN, Dolstra O, Humphreys MO, Wolters L, Luessink W, de Riek W, Bark N. Lower nitrogen losses through marker assisted selection for nitrogen use efficiency and feeding value (NIMGRASS). Vort Pflanz 2003, 59:270-279.
-
(2003)
Vort Pflanz
, vol.59
, pp. 270-279
-
-
van Loo, E.N.1
Dolstra, O.2
Humphreys, M.O.3
Wolters, L.4
Luessink, W.5
de Riek, W.6
Bark, N.7
-
8
-
-
46249117552
-
Segregation distortion in Lolium: evidence for genetic effects
-
10.1007/s00122-008-0774-7, 18542912
-
Anhalt U, Heslop-Harrison JP, Byrne S, Guillard A, Barth S. Segregation distortion in Lolium: evidence for genetic effects. Theor Appl Genet 2008, 117:297-306. 10.1007/s00122-008-0774-7, 18542912.
-
(2008)
Theor Appl Genet
, vol.117
, pp. 297-306
-
-
Anhalt, U.1
Heslop-Harrison, J.P.2
Byrne, S.3
Guillard, A.4
Barth, S.5
-
9
-
-
13844286145
-
Functionally associated molecular genetic marker map construction in perennial ryegrass (Lolium perenne L.)
-
10.1007/s00122-004-1785-7, 15526086
-
Faville MJ, Vecchies AC, Schreiber M, Drayton MC, Hughes LJ, Jones ES, Guthridge KM, Smith KF, Sawbridge T, Spangenberg GC, et al. Functionally associated molecular genetic marker map construction in perennial ryegrass (Lolium perenne L.). Theor Appl Genet 2004, 110:12-32. 10.1007/s00122-004-1785-7, 15526086.
-
(2004)
Theor Appl Genet
, vol.110
, pp. 12-32
-
-
Faville, M.J.1
Vecchies, A.C.2
Schreiber, M.3
Drayton, M.C.4
Hughes, L.J.5
Jones, E.S.6
Guthridge, K.M.7
Smith, K.F.8
Sawbridge, T.9
Spangenberg, G.C.10
-
10
-
-
20144365251
-
Sixty simple sequence repeat markers for use in the Festuca-Lolium complex of grasses
-
Lauvergeat V, Barre P, Bonnet M, Ghesquière M. Sixty simple sequence repeat markers for use in the Festuca-Lolium complex of grasses. Mol Ecol Notes 2005, 5:401-405.
-
(2005)
Mol Ecol Notes
, vol.5
, pp. 401-405
-
-
Lauvergeat, V.1
Barre, P.2
Bonnet, M.3
Ghesquière, M.4
-
11
-
-
70449732604
-
Development and mapping of DArT markers within the Festuca - Lolium complex
-
10.1186/1471-2164-10-473, 2770082, 19832973
-
Kopecky D, Bartos J, Lukaszewski A, Baird J, Cernoch V, Kölliker R, Rognli OA, Blois H, Caig V, Lübberstedt T, et al. Development and mapping of DArT markers within the Festuca - Lolium complex. BMC Genomics 2009, 10:473. 10.1186/1471-2164-10-473, 2770082, 19832973.
-
(2009)
BMC Genomics
, vol.10
, pp. 473
-
-
Kopecky, D.1
Bartos, J.2
Lukaszewski, A.3
Baird, J.4
Cernoch, V.5
Kölliker, R.6
Rognli, O.A.7
Blois, H.8
Caig, V.9
Lübberstedt, T.10
-
12
-
-
41549105410
-
Expressed sequence tag-derived microsatellite markers of perennial ryegrass (Lolium perenne L.)
-
Studer B, Asp T, Frei U, Hentrup S, Meally H, Guillard A, Barth S, Muylle H, Roldán-Ruiz I, Barre P, et al. Expressed sequence tag-derived microsatellite markers of perennial ryegrass (Lolium perenne L.). Mol Breed 2008, 21:533-548.
-
(2008)
Mol Breed
, vol.21
, pp. 533-548
-
-
Studer, B.1
Asp, T.2
Frei, U.3
Hentrup, S.4
Meally, H.5
Guillard, A.6
Barth, S.7
Muylle, H.8
Roldán-Ruiz, I.9
Barre, P.10
-
13
-
-
27644579467
-
Development and mapping of a public reference set of SSR markers in Lolium perenne L
-
Jensen LB, Muylle H, Arens P, Andersen CH, Holm PB, Ghesquière M, Julier B, Lübberstedt T, Nielsen KK, Riek JD, et al. Development and mapping of a public reference set of SSR markers in Lolium perenne L. Mol Ecol Notes 2005, 5:951-957.
-
(2005)
Mol Ecol Notes
, vol.5
, pp. 951-957
-
-
Jensen, L.B.1
Muylle, H.2
Arens, P.3
Andersen, C.H.4
Holm, P.B.5
Ghesquière, M.6
Julier, B.7
Lübberstedt, T.8
Nielsen, K.K.9
Riek, J.D.10
-
14
-
-
34447529035
-
QTL analysis of crown rust resistance in perennial ryegrass under conditions of natural and artificial infection
-
Schejbel B, Jensen LB, Xing Y, Lübberstedt T. QTL analysis of crown rust resistance in perennial ryegrass under conditions of natural and artificial infection. Plant Breed 2007, 126:347-352.
-
(2007)
Plant Breed
, vol.126
, pp. 347-352
-
-
Schejbel, B.1
Jensen, L.B.2
Xing, Y.3
Lübberstedt, T.4
-
15
-
-
47149102516
-
Mapping of QTL for resistance to powdery mildew and resistance gene analogues in perennial ryegrass (Lolium perenne L.)
-
Schejbel B, Jensen LB, Asp T, Xing Y, Lübberstedt T. Mapping of QTL for resistance to powdery mildew and resistance gene analogues in perennial ryegrass (Lolium perenne L.). Plant Breed 2008, 127:368-375.
-
(2008)
Plant Breed
, vol.127
, pp. 368-375
-
-
Schejbel, B.1
Jensen, L.B.2
Asp, T.3
Xing, Y.4
Lübberstedt, T.5
-
16
-
-
50249173897
-
Genetic characterisation of seed yield and fertility traits in perennial ryegrass (Lolium perenne L.)
-
10.1007/s00122-008-0819-y, 18575835
-
Studer B, Jensen LB, Hentrup S, Brazauskas G, Kölliker R, Lübberstedt T. Genetic characterisation of seed yield and fertility traits in perennial ryegrass (Lolium perenne L.). Theor Appl Genet 2008, 117:781-791. 10.1007/s00122-008-0819-y, 18575835.
-
(2008)
Theor Appl Genet
, vol.117
, pp. 781-791
-
-
Studer, B.1
Jensen, L.B.2
Hentrup, S.3
Brazauskas, G.4
Kölliker, R.5
Lübberstedt, T.6
-
17
-
-
84873483876
-
Identification of genes involved in a 6-days water deprivation response in timothy (Phleum pratense L.) and mapping of orthologous loci in perennial ryegrass (Lolium perenne L.)
-
in press
-
Jonavičienė K, Studer B, Asp T, Jensen LB, Paplauskienė V, Lazauskas S, Brazauskas G. Identification of genes involved in a 6-days water deprivation response in timothy (Phleum pratense L.) and mapping of orthologous loci in perennial ryegrass (Lolium perenne L.). Biol Plantarum 2011, : in press.
-
(2011)
Biol Plantarum
-
-
Jonavičiene, K.1
Studer, B.2
Asp, T.3
Jensen, L.B.4
Paplauskiene, V.5
Lazauskas, S.6
Brazauskas, G.7
-
18
-
-
0036008761
-
Applications of single nucleotide polymorphisms in crop genetics
-
10.1016/S1369-5266(02)00240-6, 11856602
-
Rafalski A. Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 2002, 5:94-100. 10.1016/S1369-5266(02)00240-6, 11856602.
-
(2002)
Curr Opin Plant Biol
, vol.5
, pp. 94-100
-
-
Rafalski, A.1
-
19
-
-
35248818724
-
SNP discovery, validation, haplotype structure and linkage disequilibrium in full-length herbage nutritive quality genes of perennial ryegrass (Lolium perenne L.)
-
Ponting RC, Drayton MC, Cogan NOI, Dobrowolski MP, Spangenberg GC, Smith KF, Forster JW. SNP discovery, validation, haplotype structure and linkage disequilibrium in full-length herbage nutritive quality genes of perennial ryegrass (Lolium perenne L.). Mol Gen Genomics 2007, 278:585-597.
-
(2007)
Mol Gen Genomics
, vol.278
, pp. 585-597
-
-
Ponting, R.C.1
Drayton, M.C.2
Cogan, N.O.I.3
Dobrowolski, M.P.4
Spangenberg, G.C.5
Smith, K.F.6
Forster, J.W.7
-
20
-
-
45549086886
-
Array-based high-throughput DNA markers for crop improvement
-
10.1038/hdy.2008.35, 18461083
-
Gupta PK, Rustgi S, Mir RR. Array-based high-throughput DNA markers for crop improvement. Heredity 2008, 101:5-18. 10.1038/hdy.2008.35, 18461083.
-
(2008)
Heredity
, vol.101
, pp. 5-18
-
-
Gupta, P.K.1
Rustgi, S.2
Mir, R.R.3
-
21
-
-
79952102682
-
Population genetics of genomics-based crop improvement methods
-
10.1016/j.tig.2010.12.003, 21227531
-
Hamblin MT, Buckler ES, Jannink J-L. Population genetics of genomics-based crop improvement methods. Trends Genet 2011, 27:98-106. 10.1016/j.tig.2010.12.003, 21227531.
-
(2011)
Trends Genet
, vol.27
, pp. 98-106
-
-
Hamblin, M.T.1
Buckler, E.S.2
Jannink, J.-L.3
-
22
-
-
62349084778
-
SNP identification in crop plants
-
10.1016/j.pbi.2008.12.009, 19186095
-
Ganal MW, Altmann T, Röder MS. SNP identification in crop plants. Curr Opin Plant Biol 2009, 12:211-217. 10.1016/j.pbi.2008.12.009, 19186095.
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 211-217
-
-
Ganal, M.W.1
Altmann, T.2
Röder, M.S.3
-
23
-
-
33746051331
-
Gene-associated single nucleotide polymorphism discovery in perennial ryegrass (Lolium perenne L.)
-
Cogan NOI, Ponting RC, Vecchies AC, Drayton MC, George J, Dracatos PM, Dobrowolski MP, Sawbridge TI, Smith KF, Spangenberg GC, Forster JW. Gene-associated single nucleotide polymorphism discovery in perennial ryegrass (Lolium perenne L.). Mol Gen Genomics 2006, 276:101-112.
-
(2006)
Mol Gen Genomics
, vol.276
, pp. 101-112
-
-
Cogan, N.O.I.1
Ponting, R.C.2
Vecchies, A.C.3
Drayton, M.C.4
George, J.5
Dracatos, P.M.6
Dobrowolski, M.P.7
Sawbridge, T.I.8
Smith, K.F.9
Spangenberg, G.C.10
Forster, J.W.11
-
24
-
-
0033018816
-
Reliable identification of large numbers of candidate SNPs from public EST data
-
10.1038/6851, 10080189
-
Buetow KH, Edmonson MN, Cassidy AB. Reliable identification of large numbers of candidate SNPs from public EST data. Nat Genet 1999, 21:323-325. 10.1038/6851, 10080189.
-
(1999)
Nat Genet
, vol.21
, pp. 323-325
-
-
Buetow, K.H.1
Edmonson, M.N.2
Cassidy, A.B.3
-
25
-
-
0033015046
-
Mining SNPs From EST Databases
-
310719, 10022981
-
Picoult-Newberg L, Ideker TE, Pohl MG, Taylor SL, Donaldson MA, Nickerson DA, Boyce-Jacino M. Mining SNPs From EST Databases. Genome Res 1999, 9:167-174. 310719, 10022981.
-
(1999)
Genome Res
, vol.9
, pp. 167-174
-
-
Picoult-Newberg, L.1
Ideker, T.E.2
Pohl, M.G.3
Taylor, S.L.4
Donaldson, M.A.5
Nickerson, D.A.6
Boyce-Jacino, M.7
-
26
-
-
0042201892
-
Mining single-nucleotide polymorphisms from hexaploid wheat ESTs
-
10.1139/g03-027, 12834059
-
Somers DJ, Kirkpatrick R, Moniwa M, Walsh A. Mining single-nucleotide polymorphisms from hexaploid wheat ESTs. Genome 2003, 46:431-437. 10.1139/g03-027, 12834059.
-
(2003)
Genome
, vol.46
, pp. 431-437
-
-
Somers, D.J.1
Kirkpatrick, R.2
Moniwa, M.3
Walsh, A.4
-
27
-
-
0142107475
-
Snipping polymorphisms from large EST collections in barley (Hordeum vulgare L.)
-
Kota R, Rudd S, Facius A, Kolesov G, Thiel T, Zhang H, Stein N, Mayer K, Graner A. Snipping polymorphisms from large EST collections in barley (Hordeum vulgare L.). Mol Gen Genomics 2003, 270:24-33.
-
(2003)
Mol Gen Genomics
, vol.270
, pp. 24-33
-
-
Kota, R.1
Rudd, S.2
Facius, A.3
Kolesov, G.4
Thiel, T.5
Zhang, H.6
Stein, N.7
Mayer, K.8
Graner, A.9
-
28
-
-
53649088131
-
Applications of next-generation sequencing technologies in functional genomics
-
10.1016/j.ygeno.2008.07.001, 18703132
-
Morozova O, Marra MA. Applications of next-generation sequencing technologies in functional genomics. Genomics 2008, 92:255-264. 10.1016/j.ygeno.2008.07.001, 18703132.
-
(2008)
Genomics
, vol.92
, pp. 255-264
-
-
Morozova, O.1
Marra, M.A.2
-
29
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
10.1038/nrg3012, 21681211
-
Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat Rev Genet 2011, 12:499-510. 10.1038/nrg3012, 21681211.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
Blaxter, M.L.6
-
30
-
-
70450204614
-
A first-generation haplotype map of maize
-
10.1126/science.1177837, 19965431
-
Gore MA, Chia JM, Elshire RJ, Sun Q, Ersoz ES, Hurwitz BL, Peiffer JA, McMullen MD, Grills GS, Ross-Ibarra J. A first-generation haplotype map of maize. Science 2009, 326:1115-1117. 10.1126/science.1177837, 19965431.
-
(2009)
Science
, vol.326
, pp. 1115-1117
-
-
Gore, M.A.1
Chia, J.M.2
Elshire, R.J.3
Sun, Q.4
Ersoz, E.S.5
Hurwitz, B.L.6
Peiffer, J.A.7
McMullen, M.D.8
Grills, G.S.9
Ross-Ibarra, J.10
-
31
-
-
79951727241
-
Rapid genome-wide single nucleotide polymorphism discovery in soybean and rice via deep resequencing of reduced representation libraries with the Illumina genome analyzer
-
Deschamps S, Rota ML, Ratashak JP, Biddle P, Thureen D, Farmer A, Luck S, Beatty M, Nagasawa N, Michael L. Rapid genome-wide single nucleotide polymorphism discovery in soybean and rice via deep resequencing of reduced representation libraries with the Illumina genome analyzer. The Plant Genome 2010, 3:53-68.
-
(2010)
The Plant Genome
, vol.3
, pp. 53-68
-
-
Deschamps, S.1
Rota, M.L.2
Ratashak, J.P.3
Biddle, P.4
Thureen, D.5
Farmer, A.6
Luck, S.7
Beatty, M.8
Nagasawa, N.9
Michael, L.10
-
32
-
-
77952534535
-
Rapid genomic characterization of the genus Vitis
-
10.1371/journal.pone.0008219, 2805708, 20084295
-
Myles S, Chia J-M, Hurwitz B, Simon C, Zhong GY, Buckler E, Ware D. Rapid genomic characterization of the genus Vitis. PLoS ONE 2010, 5:e8219. 10.1371/journal.pone.0008219, 2805708, 20084295.
-
(2010)
PLoS ONE
, vol.5
-
-
Myles, S.1
Chia, J.-M.2
Hurwitz, B.3
Simon, C.4
Zhong, G.Y.5
Buckler, E.6
Ware, D.7
-
33
-
-
77955527989
-
High-throughput SNP discovery and assay development in common bean
-
10.1186/1471-2164-11-475, 3091671, 20712881
-
Hyten DL, Song Q, Fickus EW, Quigley CV, Lim J-S, Choi I-Y, Hwang E-Y, Pastor-Corrales M, Cregan PB. High-throughput SNP discovery and assay development in common bean. BMC Genomics 2010, 11:475. 10.1186/1471-2164-11-475, 3091671, 20712881.
-
(2010)
BMC Genomics
, vol.11
, pp. 475
-
-
Hyten, D.L.1
Song, Q.2
Fickus, E.W.3
Quigley, C.V.4
Lim, J.-S.5
Choi, I.-Y.6
Hwang, E.-Y.7
Pastor-Corrales, M.8
Cregan, P.B.9
-
34
-
-
76749130701
-
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
-
10.1186/1471-2164-11-38, 2817691, 20078886
-
Hyten DL, Cannon SB, Song Q, Weeks N, Fickus EW, Shoemaker RC, Specht JE, Farmer AD, May GD, Cregan PB. High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics 2010, 11:38. 10.1186/1471-2164-11-38, 2817691, 20078886.
-
(2010)
BMC Genomics
, vol.11
, pp. 38
-
-
Hyten, D.L.1
Cannon, S.B.2
Song, Q.3
Weeks, N.4
Fickus, E.W.5
Shoemaker, R.C.6
Specht, J.E.7
Farmer, A.D.8
May, G.D.9
Cregan, P.B.10
-
35
-
-
34548128406
-
SNP discovery via 454 transcriptome sequencing
-
10.1111/j.1365-313X.2007.03193.x, 2169515, 17662031
-
Barbazuk WB, Emrich SJ, Chen HD, Li L, Schnable PS. SNP discovery via 454 transcriptome sequencing. Plant J 2007, 51:910-918. 10.1111/j.1365-313X.2007.03193.x, 2169515, 17662031.
-
(2007)
Plant J
, vol.51
, pp. 910-918
-
-
Barbazuk, W.B.1
Emrich, S.J.2
Chen, H.D.3
Li, L.4
Schnable, P.S.5
-
36
-
-
64749090107
-
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
-
10.1111/j.1467-7652.2008.00396.x, 19207216
-
Trick M, Long Y, Meng J, Bancroft I. Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol J 2009, 7:334-346. 10.1111/j.1467-7652.2008.00396.x, 19207216.
-
(2009)
Plant Biotechnol J
, vol.7
, pp. 334-346
-
-
Trick, M.1
Long, Y.2
Meng, J.3
Bancroft, I.4
-
37
-
-
79958248844
-
SNP discovery by transcriptome pyrosequencing
-
10.1007/978-1-61779-065-2_15, 21365494
-
Barbazuk WB, Schnable PS. SNP discovery by transcriptome pyrosequencing. Methods Mol Biol 2011, 729:225-246. 10.1007/978-1-61779-065-2_15, 21365494.
-
(2011)
Methods Mol Biol
, vol.729
, pp. 225-246
-
-
Barbazuk, W.B.1
Schnable, P.S.2
-
38
-
-
81555205693
-
Novel tools for conservation genomics: Comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake
-
10.1371/journal.pone.0028008, 3222667, 22132191
-
Milano I, Babbucci M, Panitz F, Ogden R, Nielsen RO, Taylor MI, Helyar SJ, Carvalho GR, Espiñeira M, Atanassova M, et al. Novel tools for conservation genomics: Comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake. PLoS ONE 2011, 6:e28008. 10.1371/journal.pone.0028008, 3222667, 22132191.
-
(2011)
PLoS ONE
, vol.6
-
-
Milano, I.1
Babbucci, M.2
Panitz, F.3
Ogden, R.4
Nielsen, R.O.5
Taylor, M.I.6
Helyar, S.J.7
Carvalho, G.R.8
Espiñeira, M.9
Atanassova, M.10
-
39
-
-
33746266617
-
Highly parallel genomic assays
-
10.1038/nrg1901, 16847463
-
Fan JB, Chee MS, Gunderson KL. Highly parallel genomic assays. Nat Rev Genet 2006, 7:632-644. 10.1038/nrg1901, 16847463.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 632-644
-
-
Fan, J.B.1
Chee, M.S.2
Gunderson, K.L.3
-
40
-
-
33845474931
-
From the cover: Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties
-
10.1073/pnas.0606133103, 1693718, 17085595
-
Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat PR, Roose ML, Svensson JT, Stein N, Varshney RK, Marshall DF, et al. From the cover: Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proc Natl Acad Sci USA 2006, 103:18656-18661. 10.1073/pnas.0606133103, 1693718, 17085595.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18656-18661
-
-
Rostoks, N.1
Ramsay, L.2
MacKenzie, K.3
Cardle, L.4
Bhat, P.R.5
Roose, M.L.6
Svensson, J.T.7
Stein, N.8
Varshney, R.K.9
Marshall, D.F.10
-
41
-
-
68349146530
-
An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines
-
10.1007/s00122-009-1071-9, 19488734
-
Sato K, Takeda K. An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines. Theor Appl Genet 2009, 119:613-619. 10.1007/s00122-009-1071-9, 19488734.
-
(2009)
Theor Appl Genet
, vol.119
, pp. 613-619
-
-
Sato, K.1
Takeda, K.2
-
42
-
-
73449108400
-
Development and implementation of high-throughput SNP genotyping in barley
-
10.1186/1471-2164-10-582, 2797026, 19961604
-
Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, et al. Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 2009, 10:582. 10.1186/1471-2164-10-582, 2797026, 19961604.
-
(2009)
BMC Genomics
, vol.10
, pp. 582
-
-
Close, T.J.1
Bhat, P.R.2
Lonardi, S.3
Wu, Y.4
Rostoks, N.5
Ramsay, L.6
Druka, A.7
Stein, N.8
Svensson, J.T.9
Wanamaker, S.10
-
43
-
-
42149108480
-
High-throughput genotyping with the GoldenGate assay in the complex genome of soybean
-
10.1007/s00122-008-0726-2, 18278477
-
Hyten D, Song Q, Choi I-Y, Yoon M-S, Specht J, Matukumalli L, Nelson R, Shoemaker R, Young N, Cregan P. High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor Appl Genet 2008, 116:945-952. 10.1007/s00122-008-0726-2, 18278477.
-
(2008)
Theor Appl Genet
, vol.116
, pp. 945-952
-
-
Hyten, D.1
Song, Q.2
Choi, I.-Y.3
Yoon, M.-S.4
Specht, J.5
Matukumalli, L.6
Nelson, R.7
Shoemaker, R.8
Young, N.9
Cregan, P.10
-
44
-
-
3142700743
-
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
-
10.1105/tpc.021345, 514152, 15208399
-
Blanc G, Wolfe KH. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 2004, 16:1667-1678. 10.1105/tpc.021345, 514152, 15208399.
-
(2004)
Plant Cell
, vol.16
, pp. 1667-1678
-
-
Blanc, G.1
Wolfe, K.H.2
-
45
-
-
34548546841
-
A soybean transcript map: Gene distribution, haplotype and single-nucleotide polymorphism analysis
-
10.1534/genetics.107.070821, 1893076, 17339218
-
Choi I-Y, Hyten DL, Matukumalli LK, Song Q, Chaky JM, Quigley CV, Chase K, Lark KG, Reiter RS, Yoon M-S, et al. A soybean transcript map: Gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics 2007, 176:685-696. 10.1534/genetics.107.070821, 1893076, 17339218.
-
(2007)
Genetics
, vol.176
, pp. 685-696
-
-
Choi, I.-Y.1
Hyten, D.L.2
Matukumalli, L.K.3
Song, Q.4
Chaky, J.M.5
Quigley, C.V.6
Chase, K.7
Lark, K.G.8
Reiter, R.S.9
Yoon, M.-S.10
-
46
-
-
78049300889
-
High-throughput genotyping of unknown genomic terrain in complex plant genomes: lessons from a case study
-
Sandve SR, Rudi H, Dørum G, Berg PR, Rognli OA. High-throughput genotyping of unknown genomic terrain in complex plant genomes: lessons from a case study. Mol Breed 2010, 26:711-718.
-
(2010)
Mol Breed
, vol.26
, pp. 711-718
-
-
Sandve, S.R.1
Rudi, H.2
Dørum, G.3
Berg, P.R.4
Rognli, O.A.5
-
47
-
-
78049338441
-
Genome-wide patterns of genetic variation among elite maize inbred lines
-
10.1038/ng.684, 20972441
-
Lai J, Li R, Xu X, Jin W, Xu M, Zhao H, Xiang Z, Song W, Ying K, Zhang M, et al. Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet 2010, 42:1027-1030. 10.1038/ng.684, 20972441.
-
(2010)
Nat Genet
, vol.42
, pp. 1027-1030
-
-
Lai, J.1
Li, R.2
Xu, X.3
Jin, W.4
Xu, M.5
Zhao, H.6
Xiang, Z.7
Song, W.8
Ying, K.9
Zhang, M.10
-
48
-
-
78049242288
-
High-throughput SNP genotyping with the GoldenGate assay in maize
-
Yan J, Yang X, Shah T, Sánchez-Villeda H, Li J, Warburton M, Zhou Y, Crouch J, Xu Y. High-throughput SNP genotyping with the GoldenGate assay in maize. Mol Breed 2010, 25:441-451.
-
(2010)
Mol Breed
, vol.25
, pp. 441-451
-
-
Yan, J.1
Yang, X.2
Shah, T.3
Sánchez-Villeda, H.4
Li, J.5
Warburton, M.6
Zhou, Y.7
Crouch, J.8
Xu, Y.9
-
49
-
-
77949517584
-
Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers
-
10.1371/journal.pone.0008451, 2795174, 20041112
-
Yan J, Shah T, Warburton ML, Buckler ES, McMullen MD, Crouch J. Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS ONE 2009, 4:e8451. 10.1371/journal.pone.0008451, 2795174, 20041112.
-
(2009)
PLoS ONE
, vol.4
-
-
Yan, J.1
Shah, T.2
Warburton, M.L.3
Buckler, E.S.4
McMullen, M.D.5
Crouch, J.6
-
50
-
-
67749088031
-
Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay
-
10.1007/s00122-009-1059-5, 2715469, 19449174
-
Akhunov E, Nicolet C, Dvorak J. Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay. Theor Appl Genet 2009, 119:507-517. 10.1007/s00122-009-1059-5, 2715469, 19449174.
-
(2009)
Theor Appl Genet
, vol.119
, pp. 507-517
-
-
Akhunov, E.1
Nicolet, C.2
Dvorak, J.3
-
51
-
-
78649244510
-
SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species Brassica napus
-
10.1139/G10-079, 21076510
-
Durstewitz G, Polley A, Plieske J, Luerssen H, Graner EM, Wieseke R, Ganal MW. SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species Brassica napus. Genome 2010, 53:948-956. 10.1139/G10-079, 21076510.
-
(2010)
Genome
, vol.53
, pp. 948-956
-
-
Durstewitz, G.1
Polley, A.2
Plieske, J.3
Luerssen, H.4
Graner, E.M.5
Wieseke, R.6
Ganal, M.W.7
-
52
-
-
34548077860
-
Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa
-
10.1186/1471-2229-7-36, 1950305, 17626623
-
Asp T, Frei UK, Didion T, Nielsen KK, Lübberstedt T. Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa. BMC Plant Biol 2007, 7:36. 10.1186/1471-2229-7-36, 1950305, 17626623.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 36
-
-
Asp, T.1
Frei, U.K.2
Didion, T.3
Nielsen, K.K.4
Lübberstedt, T.5
-
53
-
-
0031428566
-
Linkage analysis in a full-sib family of an outbreeding plant species: overview and consequences for applications
-
Maliepaard C, Jansen J, Van Ooijen JW. Linkage analysis in a full-sib family of an outbreeding plant species: overview and consequences for applications. Genet Res 1997, 70:237-250.
-
(1997)
Genet Res
, vol.70
, pp. 237-250
-
-
Maliepaard, C.1
Jansen, J.2
Van Ooijen, J.W.3
-
54
-
-
77955543755
-
EST-derived SSR markers used as anchor loci for the construction of a consensus linkage map in ryegrass (Lolium spp.)
-
10.1186/1471-2229-10-177, 3095307, 20712870
-
Studer B, Kölliker R, Muylle H, Asp T, Frei U, Roldán-Ruiz I, Barre P, Tomaszewski C, Meally H, Barth S, et al. EST-derived SSR markers used as anchor loci for the construction of a consensus linkage map in ryegrass (Lolium spp.). BMC Plant Biol 2010, 10:177. 10.1186/1471-2229-10-177, 3095307, 20712870.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 177
-
-
Studer, B.1
Kölliker, R.2
Muylle, H.3
Asp, T.4
Frei, U.5
Roldán-Ruiz, I.6
Barre, P.7
Tomaszewski, C.8
Meally, H.9
Barth, S.10
-
56
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
10.1093/bioinformatics/bti610, 16081474
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676. 10.1093/bioinformatics/bti610, 16081474.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
57
-
-
33746384876
-
Genetic mapping reveals a single major QTL for bacterial wilt resistance in Italian ryegrass (Lolium multiflorum Lam.)
-
10.1007/s00122-006-0330-2, 16799808
-
Studer B, Boller B, Herrmann D, Bauer E, Posselt UK, Widmer F, Kölliker R. Genetic mapping reveals a single major QTL for bacterial wilt resistance in Italian ryegrass (Lolium multiflorum Lam.). Theor Appl Genet 2006, 113:661-671. 10.1007/s00122-006-0330-2, 16799808.
-
(2006)
Theor Appl Genet
, vol.113
, pp. 661-671
-
-
Studer, B.1
Boller, B.2
Herrmann, D.3
Bauer, E.4
Posselt, U.K.5
Widmer, F.6
Kölliker, R.7
-
58
-
-
68949186256
-
Next-generation sequencing technologies and their implications for crop genetics and breeding
-
10.1016/j.tibtech.2009.05.006, 19679362
-
Varshney RK, Nayak SN, May GD, Jackson SA. Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol 2009, 27:522-530. 10.1016/j.tibtech.2009.05.006, 19679362.
-
(2009)
Trends Biotechnol
, vol.27
, pp. 522-530
-
-
Varshney, R.K.1
Nayak, S.N.2
May, G.D.3
Jackson, S.A.4
-
59
-
-
79961199174
-
Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing
-
10.1038/nbt.1926, 21804563
-
Bancroft I, Morgan C, Fraser F, Higgins J, Wells R, Clissold L, Baker D, Long Y, Meng JL, Wang XW, et al. Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing. Nat Biotechnol 2011, 29:762-766. 10.1038/nbt.1926, 21804563.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 762-766
-
-
Bancroft, I.1
Morgan, C.2
Fraser, F.3
Higgins, J.4
Wells, R.5
Clissold, L.6
Baker, D.7
Long, Y.8
Meng, J.L.9
Wang, X.W.10
-
60
-
-
71949131301
-
Plant genome sequencing: applications for crop improvement
-
10.1111/j.1467-7652.2009.00459.x, 19906089
-
Edwards D, Batley J. Plant genome sequencing: applications for crop improvement. Plant Biotechnol J 2010, 8:2-9. 10.1111/j.1467-7652.2009.00459.x, 19906089.
-
(2010)
Plant Biotechnol J
, vol.8
, pp. 2-9
-
-
Edwards, D.1
Batley, J.2
-
61
-
-
64749113018
-
Discovering genetic polymorphisms in next-generation sequencing data
-
10.1111/j.1467-7652.2009.00406.x, 19386039
-
Imelfort M, Duran C, Batley J, Edwards D. Discovering genetic polymorphisms in next-generation sequencing data. Plant Biotechnol J 2009, 7:312-317. 10.1111/j.1467-7652.2009.00406.x, 19386039.
-
(2009)
Plant Biotechnol J
, vol.7
, pp. 312-317
-
-
Imelfort, M.1
Duran, C.2
Batley, J.3
Edwards, D.4
-
62
-
-
80051578403
-
Sequencing crop genomes: approaches and applications
-
10.1111/j.1469-8137.2011.03804.x, 21707621
-
Jackson SA, Iwata A, Lee SH, Schmutz J, Shoemaker R. Sequencing crop genomes: approaches and applications. New Phytol 2011, 191:915-925. 10.1111/j.1469-8137.2011.03804.x, 21707621.
-
(2011)
New Phytol
, vol.191
, pp. 915-925
-
-
Jackson, S.A.1
Iwata, A.2
Lee, S.H.3
Schmutz, J.4
Shoemaker, R.5
-
63
-
-
80053354042
-
From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)
-
10.1186/1471-2229-11-131, 3191334, 21951788
-
Haseneyer G, Schmutzer T, Seidel M, Zhou R, Mascher M, Schön C-C, Taudien S, Scholz U, Stein N, Mayer KFX, Bauer E. From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.). BMC Plant Biol 2011, 11:131. 10.1186/1471-2229-11-131, 3191334, 21951788.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 131
-
-
Haseneyer, G.1
Schmutzer, T.2
Seidel, M.3
Zhou, R.4
Mascher, M.5
Schön, C.-C.6
Taudien, S.7
Scholz, U.8
Stein, N.9
Mayer, K.F.X.10
Bauer, E.11
-
64
-
-
77955241616
-
In vitro vs in silico detected SNPs for the development of a genotyping array: What can we learn from a non-model species?
-
10.1371/journal.pone.0011034, 2882948, 20543950
-
Lepoittevin C, Frigerio J-M, Garnier-Géré P, Salin F, Cervera M-T, Vornam B, Harvengt L, Plomion C. In vitro vs in silico detected SNPs for the development of a genotyping array: What can we learn from a non-model species?. PLoS ONE 2010, 5:e11034. 10.1371/journal.pone.0011034, 2882948, 20543950.
-
(2010)
PLoS ONE
, vol.5
-
-
Lepoittevin, C.1
Frigerio, J.-M.2
Garnier-Géré, P.3
Salin, F.4
Cervera, M.-T.5
Vornam, B.6
Harvengt, L.7
Plomion, C.8
-
65
-
-
79960564809
-
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine
-
10.1186/1471-2164-12-368, 3146957, 21767361
-
Chancerel E, Lepoittevin C, Le Provost G, Lin Y-C, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio J-M, et al. Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine. BMC Genomics 2011, 12:368. 10.1186/1471-2164-12-368, 3146957, 21767361.
-
(2011)
BMC Genomics
, vol.12
, pp. 368
-
-
Chancerel, E.1
Lepoittevin, C.2
Le Provost, G.3
Lin, Y.-C.4
Jaramillo-Correa, J.P.5
Eckert, A.J.6
Wegrzyn, J.L.7
Zelenika, D.8
Boland, A.9
Frigerio, J.-M.10
-
66
-
-
79751509492
-
Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome
-
Everett MV, Grau ED, Seeb JE. Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome. Mol Ecol Resour 2011, 11:93-108.
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 93-108
-
-
Everett, M.V.1
Grau, E.D.2
Seeb, J.E.3
-
67
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
10.1186/gb-2007-8-7-r143, 2323236, 17659080
-
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol 2007, 8:R143. 10.1186/gb-2007-8-7-r143, 2323236, 17659080.
-
(2007)
Genome Biol
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Welch, D.M.5
-
68
-
-
78951478131
-
Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence
-
10.1186/1471-2164-12-59, 3041743, 21266061
-
You FM, Huo N, Deal KR, Gu YQ, Luo M-C, McGuire PE, Dvorak J, Anderson OD. Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence. BMC Genomics 2011, 12:59. 10.1186/1471-2164-12-59, 3041743, 21266061.
-
(2011)
BMC Genomics
, vol.12
, pp. 59
-
-
You, F.M.1
Huo, N.2
Deal, K.R.3
Gu, Y.Q.4
Luo, M.-C.5
McGuire, P.E.6
Dvorak, J.7
Anderson, O.D.8
-
69
-
-
79961169114
-
Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon
-
10.1007/s00122-011-1598-4, 21597976
-
Huo N, Garvin DF, You FM, McMahon S, Luo M, Cheng, Gu YQ, Lazo GR, Vogel JP. Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon. Theor Appl Genet 2011, 123:455-464. 10.1007/s00122-011-1598-4, 21597976.
-
(2011)
Theor Appl Genet
, vol.123
, pp. 455-464
-
-
Huo, N.1
Garvin, D.F.2
You, F.M.3
McMahon, S.4
Luo, M.5
Cheng6
Gu, Y.Q.7
Lazo, G.R.8
Vogel, J.P.9
-
70
-
-
77955391799
-
Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea
-
10.1186/1471-2164-11-468, 3091664, 20701750
-
Deulvot C, Charrel H, Marty A, Jacquin F, Donnadieu C, Lejeune-Henaut I, Burstin J, Aubert G. Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea. BMC Genomics 2010, 11:468. 10.1186/1471-2164-11-468, 3091664, 20701750.
-
(2010)
BMC Genomics
, vol.11
, pp. 468
-
-
Deulvot, C.1
Charrel, H.2
Marty, A.3
Jacquin, F.4
Donnadieu, C.5
Lejeune-Henaut, I.6
Burstin, J.7
Aubert, G.8
-
71
-
-
39549102178
-
Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce
-
10.1186/1471-2164-9-21, 2246113, 18205909
-
Pavy N, Pelgas B, Beauseigle S, Blais S, Gagnon F, Gosselin I, Lamothe M, Isabel N, Bousquet J. Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce. BMC Genomics 2008, 9:21. 10.1186/1471-2164-9-21, 2246113, 18205909.
-
(2008)
BMC Genomics
, vol.9
, pp. 21
-
-
Pavy, N.1
Pelgas, B.2
Beauseigle, S.3
Blais, S.4
Gagnon, F.5
Gosselin, I.6
Lamothe, M.7
Isabel, N.8
Bousquet, J.9
-
72
-
-
76749107192
-
A high density integrated genetic linkage map of soybean and the development of a 1536 universal soy linkage panel for quantitative trait locus mapping
-
Hyten DL, Choi I-Y, Song Q, Specht JE, Carter TE, Shoemaker RC, Hwang E-Y, Matukumalli LK, Cregan PB. A high density integrated genetic linkage map of soybean and the development of a 1536 universal soy linkage panel for quantitative trait locus mapping. Crop Sci 2010, 50:960-968.
-
(2010)
Crop Sci
, vol.50
, pp. 960-968
-
-
Hyten, D.L.1
Choi, I.-Y.2
Song, Q.3
Specht, J.E.4
Carter, T.E.5
Shoemaker, R.C.6
Hwang, E.-Y.7
Matukumalli, L.K.8
Cregan, P.B.9
-
73
-
-
77952424242
-
A pipeline for high throughput detection and mapping of SNPs from EST databases
-
10.1007/s11032-009-9377-5, 2869401, 20502512
-
Anithakumari AM, Tang J, van Eck HJ, Visser RGF, Leunissen JAM, Vosman B, van der Linden C. A pipeline for high throughput detection and mapping of SNPs from EST databases. Mol Breed 2010, 26:65-75. 10.1007/s11032-009-9377-5, 2869401, 20502512.
-
(2010)
Mol Breed
, vol.26
, pp. 65-75
-
-
Anithakumari, A.M.1
Tang, J.2
van Eck, H.J.3
Visser, R.G.F.4
Leunissen, J.A.M.5
Vosman, B.6
van der Linden, C.7
-
74
-
-
0034759049
-
Recent advances in molecular genetics of forest trees
-
Ahuja MR. Recent advances in molecular genetics of forest trees. Euphytica 2001, 121:173-195.
-
(2001)
Euphytica
, vol.121
, pp. 173-195
-
-
Ahuja, M.R.1
-
75
-
-
79953839352
-
High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species
-
10.1186/1471-2229-11-65, 3090336, 21492434
-
Grattapaglia D, Silva OB, Kirst M, de Lima BM, Faria DA, Pappas GJ. High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species. BMC Plant Biol 2011, 11:65. 10.1186/1471-2229-11-65, 3090336, 21492434.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 65
-
-
Grattapaglia, D.1
Silva, O.B.2
Kirst, M.3
de Lima, B.M.4
Faria, D.A.5
Pappas, G.J.6
-
76
-
-
33644836226
-
Vernalization response in perennial ryegrass (Lolium perenne L.) involves orthologues of diploid wheat (Triticum monococcum) VRN1 and Rice (Oryza sativa) Hd1
-
10.1007/s11103-005-4815-1, 16525886
-
Andersen JR, Jensen LB, Asp T, Lübberstedt T. Vernalization response in perennial ryegrass (Lolium perenne L.) involves orthologues of diploid wheat (Triticum monococcum) VRN1 and Rice (Oryza sativa) Hd1. Plant Mol Biol 2006, 60:481-494. 10.1007/s11103-005-4815-1, 16525886.
-
(2006)
Plant Mol Biol
, vol.60
, pp. 481-494
-
-
Andersen, J.R.1
Jensen, L.B.2
Asp, T.3
Lübberstedt, T.4
-
77
-
-
70349986680
-
" Blind" mapping of genic DNA sequence polymorphisms in Lolium perenne L. by high resolution melting curve analysis
-
Studer B, Jensen LB, Fiil A, Asp T. " Blind" mapping of genic DNA sequence polymorphisms in Lolium perenne L. by high resolution melting curve analysis. Mol Breed 2009, 24:191-199.
-
(2009)
Mol Breed
, vol.24
, pp. 191-199
-
-
Studer, B.1
Jensen, L.B.2
Fiil, A.3
Asp, T.4
-
78
-
-
0035103040
-
A terminal flower1-like gene from perennial ryegrass involved in floral transition and axillary meristem identity
-
10.1104/pp.125.3.1517, 65629, 11244130
-
Jensen CS, Salchert K, Nielsen KK. A terminal flower1-like gene from perennial ryegrass involved in floral transition and axillary meristem identity. Plant Physiol 2001, 125:1517-1528. 10.1104/pp.125.3.1517, 65629, 11244130.
-
(2001)
Plant Physiol
, vol.125
, pp. 1517-1528
-
-
Jensen, C.S.1
Salchert, K.2
Nielsen, K.K.3
-
79
-
-
33847368962
-
Wheat VIN3-like PHD finger genes are up-regulated by vernalization
-
Fu D, Dunbar M, Dubcovsky J. Wheat VIN3-like PHD finger genes are up-regulated by vernalization. Mol Gen Genomics 2007, 277:301-313.
-
(2007)
Mol Gen Genomics
, vol.277
, pp. 301-313
-
-
Fu, D.1
Dunbar, M.2
Dubcovsky, J.3
-
80
-
-
67649909024
-
Fructan and its relationship to abiotic stress tolerance in plants
-
10.1007/s00018-009-0002-x, 2705711, 19290476
-
Livingston DT, Hincha DK, Heyer AG. Fructan and its relationship to abiotic stress tolerance in plants. Cell Mol Life Sci 2009, 66:2007-2023. 10.1007/s00018-009-0002-x, 2705711, 19290476.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 2007-2023
-
-
Livingston, D.T.1
Hincha, D.K.2
Heyer, A.G.3
-
81
-
-
79952446156
-
Transcriptional responses of Italian ryegrass during interaction with Xanthomonas translucens pv. graminis reveal novel candidate genes for bacterial wilt resistance
-
10.1007/s00122-010-1470-y, 20976589
-
Wichmann F, Asp T, Widmer F, Kölliker R. Transcriptional responses of Italian ryegrass during interaction with Xanthomonas translucens pv. graminis reveal novel candidate genes for bacterial wilt resistance. Theor Appl Genet 2011, 122:567-579. 10.1007/s00122-010-1470-y, 20976589.
-
(2011)
Theor Appl Genet
, vol.122
, pp. 567-579
-
-
Wichmann, F.1
Asp, T.2
Widmer, F.3
Kölliker, R.4
-
82
-
-
58449134895
-
A germin-like protein gene family functions as a complex quantitative trait locus conferring broad-spectrum disease resistance in rice
-
10.1104/pp.108.128348, 2613727, 19011003
-
Manosalva PM, Davidson RM, Liu B, Zhu X, Hulbert SH, Leung H, Leach JE. A germin-like protein gene family functions as a complex quantitative trait locus conferring broad-spectrum disease resistance in rice. Plant Physiol 2009, 149:286-296. 10.1104/pp.108.128348, 2613727, 19011003.
-
(2009)
Plant Physiol
, vol.149
, pp. 286-296
-
-
Manosalva, P.M.1
Davidson, R.M.2
Liu, B.3
Zhu, X.4
Hulbert, S.H.5
Leung, H.6
Leach, J.E.7
-
83
-
-
33845930077
-
Construction of two Lolium perenne BAC libraries and identification of BACs containing candidate genes for disease resistance and forage quality
-
Farrar K, Asp T, Lübberstedt T, Xu ML, Thomas AM, Christiansen C, Humphreys MO, Donnison IS. Construction of two Lolium perenne BAC libraries and identification of BACs containing candidate genes for disease resistance and forage quality. Mol Breed 2007, 19:15-23.
-
(2007)
Mol Breed
, vol.19
, pp. 15-23
-
-
Farrar, K.1
Asp, T.2
Lübberstedt, T.3
Xu, M.L.4
Thomas, A.M.5
Christiansen, C.6
Humphreys, M.O.7
Donnison, I.S.8
-
84
-
-
33847353451
-
A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics
-
10.1007/s00122-006-0480-2, 17219208
-
Stein N, Prasad M, Scholz U, Thiel T, Zhang H, Wolf M, Kota R, Varshney R, Perovic D, Grosse I, Graner A. A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. Theor Appl Genet 2007, 114:823-839. 10.1007/s00122-006-0480-2, 17219208.
-
(2007)
Theor Appl Genet
, vol.114
, pp. 823-839
-
-
Stein, N.1
Prasad, M.2
Scholz, U.3
Thiel, T.4
Zhang, H.5
Wolf, M.6
Kota, R.7
Varshney, R.8
Perovic, D.9
Grosse, I.10
Graner, A.11
-
85
-
-
79957676864
-
Unlocking the barley genome by chromosomal and comparative genomics
-
10.1105/tpc.110.082537, 3101540, 21467582
-
Mayer KFX, Martis M, Hedley PE, Šimková H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, et al. Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell 2011, 23:1249-1263. 10.1105/tpc.110.082537, 3101540, 21467582.
-
(2011)
Plant Cell
, vol.23
, pp. 1249-1263
-
-
Mayer, K.F.X.1
Martis, M.2
Hedley, P.E.3
Šimková, H.4
Liu, H.5
Morris, J.A.6
Steuernagel, B.7
Taudien, S.8
Roessner, S.9
Gundlach, H.10
-
86
-
-
0027239768
-
Grasses as a single genetic system: genome composition, collinearity and compatibility
-
10.1016/0168-9525(93)90001-X, 8379002
-
Bennetzen JL, Freeling M. Grasses as a single genetic system: genome composition, collinearity and compatibility. Trends Genet 1993, 9:259-261. 10.1016/0168-9525(93)90001-X, 8379002.
-
(1993)
Trends Genet
, vol.9
, pp. 259-261
-
-
Bennetzen, J.L.1
Freeling, M.2
-
87
-
-
18144429122
-
Chromosomal rearrangements differentiating the ryegrass genome from the Triticeae, oat, and rice genomes using common heterologous RFLP probes
-
10.1007/s00122-004-1916-1, 15742203
-
Sim S, Chang T, Curley J, Warnke SE, Barker RE, Jung G. Chromosomal rearrangements differentiating the ryegrass genome from the Triticeae, oat, and rice genomes using common heterologous RFLP probes. Theor Appl Genet 2005, 110:1011-1019. 10.1007/s00122-004-1916-1, 15742203.
-
(2005)
Theor Appl Genet
, vol.110
, pp. 1011-1019
-
-
Sim, S.1
Chang, T.2
Curley, J.3
Warnke, S.E.4
Barker, R.E.5
Jung, G.6
-
88
-
-
0036009434
-
An enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes
-
10.1139/g01-144, 11962626
-
Jones ES, Mahoney NL, Hayward MD, Armstead IP, Jones JG, Humphreys MO, King IP, Kishida T, Yamada T, Balfourier F, et al. An enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes. Genome 2002, 45:282-295. 10.1139/g01-144, 11962626.
-
(2002)
Genome
, vol.45
, pp. 282-295
-
-
Jones, E.S.1
Mahoney, N.L.2
Hayward, M.D.3
Armstead, I.P.4
Jones, J.G.5
Humphreys, M.O.6
King, I.P.7
Kishida, T.8
Yamada, T.9
Balfourier, F.10
-
89
-
-
66449120272
-
High-throughput genotyping by whole-genome resequencing
-
10.1101/gr.089516.108, 2694477, 19420380
-
Huang X, Feng Q, Qian Q, Zhao Q, Wang L, Wang A, Guan J, Fan D, Weng Q, Huang T. High-throughput genotyping by whole-genome resequencing. Genome Res 2009, 19:1068-1076. 10.1101/gr.089516.108, 2694477, 19420380.
-
(2009)
Genome Res
, vol.19
, pp. 1068-1076
-
-
Huang, X.1
Feng, Q.2
Qian, Q.3
Zhao, Q.4
Wang, L.5
Wang, A.6
Guan, J.7
Fan, D.8
Weng, Q.9
Huang, T.10
-
90
-
-
77955482663
-
Accurate prediction of genetic values for complex traits by whole-genome resequencing
-
10.1534/genetics.110.116590, 2881142, 20308278
-
Meuwissen T, Goddard M. Accurate prediction of genetic values for complex traits by whole-genome resequencing. Genetics 2010, 185:623-631. 10.1534/genetics.110.116590, 2881142, 20308278.
-
(2010)
Genetics
, vol.185
, pp. 623-631
-
-
Meuwissen, T.1
Goddard, M.2
-
91
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
10.1371/journal.pone.0019379, 3087801, 21573248
-
Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES, Mitchell SE. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 2011, 6:e19379. 10.1371/journal.pone.0019379, 3087801, 21573248.
-
(2011)
PLoS ONE
, vol.6
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Sun, Q.3
Poland, J.A.4
Kawamoto, K.5
Buckler, E.S.6
Mitchell, S.E.7
-
92
-
-
34250870607
-
Consistent detection of QTLs for crown rust resistance in Italian ryegrass (Lolium multiflorum Lam.) across environments and phenotyping methods
-
10.1007/s00122-007-0535-z, 17426957
-
Studer B, Boller B, Bauer E, Posselt U, Widmer F, Kölliker R. Consistent detection of QTLs for crown rust resistance in Italian ryegrass (Lolium multiflorum Lam.) across environments and phenotyping methods. Theor Appl Genet 2007, 115:9-17. 10.1007/s00122-007-0535-z, 17426957.
-
(2007)
Theor Appl Genet
, vol.115
, pp. 9-17
-
-
Studer, B.1
Boller, B.2
Bauer, E.3
Posselt, U.4
Widmer, F.5
Kölliker, R.6
-
93
-
-
0031955518
-
Base-calling of automated sequencer traces using phred
-
Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998, 8:175-185.
-
(1998)
I. Accuracy assessment. Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
94
-
-
0031978181
-
Base-calling of automated sequencer traces using phred
-
Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998, 8:186-194.
-
(1998)
II. Error probabilities. Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
95
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P. Consed: A graphical tool for sequence finishing. Genome Res 1998, 8:195-202.
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
96
-
-
34547834963
-
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
-
10.1371/journal.pone.0000197, 1797623, 17299583
-
Binladen J, Gilbert MTP, Bollback JP, Panitz F, Bendixen C, Nielsen R, Willerslev E. The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS ONE 2007, 2:e197. 10.1371/journal.pone.0000197, 1797623, 17299583.
-
(2007)
PLoS ONE
, vol.2
-
-
Binladen, J.1
Gilbert, M.T.P.2
Bollback, J.P.3
Panitz, F.4
Bendixen, C.5
Nielsen, R.6
Willerslev, E.7
-
97
-
-
0032706623
-
A general approach to single-nucleotide polymorphism discovery
-
10.1038/70570, 10581034
-
Marth GT, Korf I, Yandell MD, Yeh RT, Gu Z, Zakeri H, Stitziel NO, Hillier L, Kwok P-Y, Gish WR. A general approach to single-nucleotide polymorphism discovery. Nat Genet 1999, 23:452-456. 10.1038/70570, 10581034.
-
(1999)
Nat Genet
, vol.23
, pp. 452-456
-
-
Marth, G.T.1
Korf, I.2
Yandell, M.D.3
Yeh, R.T.4
Gu, Z.5
Zakeri, H.6
Stitziel, N.O.7
Hillier, L.8
Kwok, P.-Y.9
Gish, W.R.10
-
98
-
-
2442667212
-
Highly parallel SNP genotyping
-
Fan JB, Oliphant A, Shen R, Kermani BG, Garcia F, Gunderson KL, Hansen M, Steemers F, Butler SL, Deloukas P, et al. Highly parallel SNP genotyping. Cold Spring Harb Sym Quant Biol 2003, 68:69-78.
-
(2003)
Cold Spring Harb Sym Quant Biol
, vol.68
, pp. 69-78
-
-
Fan, J.B.1
Oliphant, A.2
Shen, R.3
Kermani, B.G.4
Garcia, F.5
Gunderson, K.L.6
Hansen, M.7
Steemers, F.8
Butler, S.L.9
Deloukas, P.10
|