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Volumn 2, Issue 11, 2007, Pages 718-724

Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ELECTRIC FIELDS; ENZYMES; NANOPORES; NUCLEOTIDES; RNA;

EID: 35948947371     PISSN: 17483387     EISSN: 17483395     Source Type: Journal    
DOI: 10.1038/nnano.2007.344     Document Type: Article
Times cited : (170)

References (32)
  • 1
    • 0036797062 scopus 로고    scopus 로고
    • Characterization of nucleic acids by nanopore analysis
    • Deamer, D. W. & Branton, D. Characterization of nucleic acids by nanopore analysis. Acc. Chem. Res. 35, 817-825 (2002).
    • (2002) Acc. Chem. Res , vol.35 , pp. 817-825
    • Deamer, D.W.1    Branton, D.2
  • 2
    • 34248351114 scopus 로고    scopus 로고
    • Solid-state nanopores
    • Dekker, C. Solid-state nanopores. Nature Nanotechnol. 2, 209-215 (2007).
    • (2007) Nature Nanotechnol , vol.2 , pp. 209-215
    • Dekker, C.1
  • 3
    • 17144391818 scopus 로고    scopus 로고
    • Protein biosensors based on biofunctionalized conical gold nanotubes
    • Siwy, Z. et al. Protein biosensors based on biofunctionalized conical gold nanotubes. J. Am. Chem. Soc. 127, 5000-5001 (2005).
    • (2005) J. Am. Chem. Soc , vol.127 , pp. 5000-5001
    • Siwy, Z.1
  • 4
    • 34247536747 scopus 로고    scopus 로고
    • Single-molecule analysis of DNA-protein complexes using nanopores
    • Hornblower, B. et al. Single-molecule analysis of DNA-protein complexes using nanopores. Nature Methods 4, 315-317 (2007).
    • (2007) Nature Methods , vol.4 , pp. 315-317
    • Hornblower, B.1
  • 5
    • 34547344320 scopus 로고    scopus 로고
    • Detecting SNPs using a synthetic nanopore
    • Zhao, Q. et al. Detecting SNPs using a synthetic nanopore. Nano Lett. 7, 1680-1685 (2007).
    • (2007) Nano Lett , vol.7 , pp. 1680-1685
    • Zhao, Q.1
  • 6
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • Kasianowicz, J. J., Brandin, E., Branton, D. & Deamer, D. W. Characterization of individual polynucleotide molecules using a membrane channel. Proc. Natl Acad. Sci. USA 93, 13770-13773 (1996).
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 13770-13773
    • Kasianowicz, J.J.1    Brandin, E.2    Branton, D.3    Deamer, D.W.4
  • 7
    • 0030447720 scopus 로고    scopus 로고
    • Structure of Staphylococcal alpha-hemolysin, a heptameric transmembrane pore
    • Song, L. Z. et al. Structure of Staphylococcal alpha-hemolysin, a heptameric transmembrane pore. Science 274, 1859-1866 (1996).
    • (1996) Science , vol.274 , pp. 1859-1866
    • Song, L.Z.1
  • 8
    • 0035107270 scopus 로고    scopus 로고
    • Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel
    • Vercoutere, W. et al. Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel. Nature Biotechnol. 19, 248-252 (2001).
    • (2001) Nature Biotechnol , vol.19 , pp. 248-252
    • Vercoutere, W.1
  • 9
    • 0037440660 scopus 로고    scopus 로고
    • Discrimination among individual Watson-Crick base pairs at the termini of single DNA hairpin molecules
    • Vercoutere, W. A. et al. Discrimination among individual Watson-Crick base pairs at the termini of single DNA hairpin molecules. Nucleic Acids Res. 31, 1311-1318 (2003).
    • (2003) Nucleic Acids Res , vol.31 , pp. 1311-1318
    • Vercoutere, W.A.1
  • 10
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
    • Akeson, M., Branton, D., Kasianowicz, J. J., Brandin, E. & Deamer, D. W. Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys. J. 77, 3227-3233 (1999).
    • (1999) Biophys. J , vol.77 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.J.3    Brandin, E.4    Deamer, D.W.5
  • 11
    • 14844290867 scopus 로고    scopus 로고
    • Recognizing a single base in an individual DNA strand: A step toward DNA sequencing in nanopores
    • Ashkenasy, N., Sanchez-Quesada, J., Bayley, H. & Ghadiri, M. R. Recognizing a single base in an individual DNA strand: A step toward DNA sequencing in nanopores. Angew. Chem. Int. Edn 44, 1401-1404 (2005).
    • (2005) Angew. Chem. Int. Edn , vol.44 , pp. 1401-1404
    • Ashkenasy, N.1    Sanchez-Quesada, J.2    Bayley, H.3    Ghadiri, M.R.4
  • 12
    • 0034930381 scopus 로고    scopus 로고
    • Sequence-specific detection of individual DNA strands using engineered nanopores
    • Howorka, S., Cheley, S. & Bayley, H. Sequence-specific detection of individual DNA strands using engineered nanopores. Nature Biotechnol. 19, 636-639 (2001).
    • (2001) Nature Biotechnol , vol.19 , pp. 636-639
    • Howorka, S.1    Cheley, S.2    Bayley, H.3
  • 13
    • 33646153053 scopus 로고    scopus 로고
    • Determination of RNA orientation during translocation through a biological nanopore
    • Butler, T. Z., Gundlach, J. H. & Troll, M. A. Determination of RNA orientation during translocation through a biological nanopore. Biophys. J. 90, 190-199 (2006).
    • (2006) Biophys. J , vol.90 , pp. 190-199
    • Butler, T.Z.1    Gundlach, J.H.2    Troll, M.A.3
  • 15
    • 23144448498 scopus 로고    scopus 로고
    • Fast DNA translocation through a solid-state nanopore
    • Storm, A. J. et al. Fast DNA translocation through a solid-state nanopore. Nano Lett. 5, 1193-1197 (2005).
    • (2005) Nano Lett , vol.5 , pp. 1193-1197
    • Storm, A.J.1
  • 16
    • 0036672773 scopus 로고    scopus 로고
    • Evaluation of nanopores as candidates for electronic analyte detection
    • Nakane, J., Akeson, M. & Marziali, A. Evaluation of nanopores as candidates for electronic analyte detection. Electrophoresis 23, 2592-2601 (2002).
    • (2002) Electrophoresis , vol.23 , pp. 2592-2601
    • Nakane, J.1    Akeson, M.2    Marziali, A.3
  • 17
    • 0035849885 scopus 로고    scopus 로고
    • Ion-beam sculpting at nanometre length scales
    • Li, J. et al. Ion-beam sculpting at nanometre length scales. Nature 412, 166-169 (2001).
    • (2001) Nature , vol.412 , pp. 166-169
    • Li, J.1
  • 18
    • 0035951448 scopus 로고    scopus 로고
    • Capture of a single molecule in a nanocavity
    • Gu, L.-Q., Cheley, S. & Bayley, H. Capture of a single molecule in a nanocavity Science 291, 636-640 (2001).
    • (2001) Science , vol.291 , pp. 636-640
    • Gu, L.-Q.1    Cheley, S.2    Bayley, H.3
  • 19
    • 34248399955 scopus 로고    scopus 로고
    • Solid-state nanopore channels with DNA selectivity
    • Iqbal, S. M., Akin, D. & Bashir, R. Solid-state nanopore channels with DNA selectivity. Nature Nanotechnol. 2, 243-248 (2007).
    • (2007) Nature Nanotechnol , vol.2 , pp. 243-248
    • Iqbal, S.M.1    Akin, D.2    Bashir, R.3
  • 20
    • 0028206048 scopus 로고
    • Function and structure relationships in DNA polymerases
    • Joyce, C. M. & Steitz, T. A. Function and structure relationships in DNA polymerases. Annu. Rev. Biochem. 63, 777-822 (1994).
    • (1994) Annu. Rev. Biochem , vol.63 , pp. 777-822
    • Joyce, C.M.1    Steitz, T.A.2
  • 21
    • 8544278025 scopus 로고    scopus 로고
    • DNA polymerase fidelity: Kinetics, structure, and checkpoints
    • Joyce, C. M. & Benkovic, S. J. DNA polymerase fidelity: Kinetics, structure, and checkpoints. Biochemistry 43, 14317-14324 (2004).
    • (2004) Biochemistry , vol.43 , pp. 14317-14324
    • Joyce, C.M.1    Benkovic, S.J.2
  • 22
    • 0027231782 scopus 로고
    • Structure of DNA polymerase I Klenow fragment bound to duplex DNA
    • Beese, L. S., Derbyshire, V. & Steitz, T. A. Structure of DNA polymerase I Klenow fragment bound to duplex DNA. Science 260, 352-355 (1993).
    • (1993) Science , vol.260 , pp. 352-355
    • Beese, L.S.1    Derbyshire, V.2    Steitz, T.A.3
  • 23
    • 0032535528 scopus 로고    scopus 로고
    • Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: Structural basis for nucleotide incorporation
    • Li, Y., Korolev, S. & Waksman, G. Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: Structural basis for nucleotide incorporation. EMBO J. 17, 7514-7525 (1998).
    • (1998) EMBO J , vol.17 , pp. 7514-7525
    • Li, Y.1    Korolev, S.2    Waksman, G.3
  • 24
    • 0037388383 scopus 로고    scopus 로고
    • Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations
    • Johnson, S. J., Taylor, J. S. & Beese, L. S. Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations. Proc. Natl Acad. Sci. USA 100, 3895-3900 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 3895-3900
    • Johnson, S.J.1    Taylor, J.S.2    Beese, L.S.3
  • 25
    • 0041823551 scopus 로고    scopus 로고
    • Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment)
    • Purohit, V., Grindley, N. D. F. & Joyce, C. M. Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment). Biochemistry 42, 10200-10211 (2003).
    • (2003) Biochemistry , vol.42 , pp. 10200-10211
    • Purohit, V.1    Grindley, N.D.F.2    Joyce, C.M.3
  • 27
    • 0028606031 scopus 로고
    • A unified polymerase mechanism for nonhomologous DNA and RNA polymerases
    • Steitz, T. A., Smerdon, S. J., Jager, J. & Joyce, C. M. A unified polymerase mechanism for nonhomologous DNA and RNA polymerases. Science 266, 2022-2025 (1994).
    • (1994) Science , vol.266 , pp. 2022-2025
    • Steitz, T.A.1    Smerdon, S.J.2    Jager, J.3    Joyce, C.M.4
  • 28
    • 0037381879 scopus 로고    scopus 로고
    • Dynamics of DNA molecules in a membrane channel probed by active control techniques
    • Bates, M., Burns, M. & Meller, A. Dynamics of DNA molecules in a membrane channel probed by active control techniques. Biophys. J. 84, 2366-2372 (2003).
    • (2003) Biophys. J , vol.84 , pp. 2366-2372
    • Bates, M.1    Burns, M.2    Meller, A.3
  • 29
    • 0037306228 scopus 로고    scopus 로고
    • Highly accurate classification of Watson-Crick basepairs on termini of single DNA molecules
    • Winters-Hilt, S. et al. Highly accurate classification of Watson-Crick basepairs on termini of single DNA molecules. Biophys. J. 84, 967-976 (2003).
    • (2003) Biophys. J , vol.84 , pp. 967-976
    • Winters-Hilt, S.1
  • 32
    • 31544471731 scopus 로고    scopus 로고
    • Salt dependence of ion transport and DNA translocation through solid-state nanopores
    • Smeets, R. M. M. et al. Salt dependence of ion transport and DNA translocation through solid-state nanopores. Nano Lett. 6, 89-95 (2006).
    • (2006) Nano Lett , vol.6 , pp. 89-95
    • Smeets, R.M.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.