Interaction of virions with membrane glycolipids

Physical Biology

Volumn 9, Issue 2, 2012, Pages

  Bally, M ^a   Dimitrievski, K ^a   Larson, G ^b   Zhdanov, V P ^a,c   Hook F ^a  

^a CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^b UNIVERSITY OF GOTHENBURG   (Sweden)

^c BORESKOV INSTITUTE OF CATALYSIS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

MIRIDAE; NOROVIRUS;

CAPSID PROTEIN; GLYCOSPHINGOLIPID;

ARTICLE; CELL MEMBRANE; FLUORESCENCE MICROSCOPY; KINETICS; LIPID BILAYER; METABOLISM; NOROVIRUS; PHYSIOLOGY; VIRION;

CAPSID PROTEINS; CELL MEMBRANE; GLYCOSPHINGOLIPIDS; KINETICS; LIPID BILAYERS; MICROSCOPY, FLUORESCENCE; NOROVIRUS; VIRION;

EID: 84859611664     PISSN: 14783967     EISSN: 14783975     Source Type: Journal    
DOI: 10.1088/1478-3975/9/2/026011     Document Type: Article

References (70)

1. Cann A J 2005 Principles of Molecular Virology (Amsterdam: Elsevier)
2. Mercer J, Schelhaas M and Helenius A 2010 Virus entry by endocytosis Ann. Rev. Biochem. 79 80333
3. Seisenberger G, Ried M U, Endress T, Bning H, Hallek M and Bruchle C 2001 Real-time single-molecule imaging of the infection pathway of an adeno-associated virus Science 294 192932 (Pubitemid 33101590)
4. Bruchle C, Seisenberger G, Endress T, Ried M U, Bning H and Hallek M 2002 Single virus tracing: visualization of the infection pathway of a virus into a living cell Chem. Phys. Chem. 3 299303
5. Lakadamyali M, Rust M J, Babcock H P and Zhuang X 2003 Visualizing infection of individual influenza viruses Proc. Natl Acad. Sci. USA 100 92805 (Pubitemid 37033920)
6. Ewers H, Smith A E, Sbalzarini I F, Lilie H, Koumoutsakos P and Helenius A 2005 Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes Proc. Natl Acad. Sci. USA 102 151105 (Pubitemid 41513343)
7. Lampe M, Briggs J A G, Endress T, Glass B, Riegelsberger S, Krusslich H-G, Lamb D C, Bruchle C and Mller B 2007 Double-labelled HIV-1 particles for study of virus-cell interaction Virology 360 92104
8. Sivaraman D, Biswas P, Cella L N, Yates M V and Chen W 2011 Detecting RNA viruses in living mammalian cells by fluorescence microscopy Trends Biotechnol. 29 30713
9. Ewers H, Jacobsen V, Klotzsch E, Smith A E, Helenius A and Sandoghdar V 2007 Label-free optical detection and tracking of single virions bound to their receptors in supported membrane bilayers Nano Lett. 7 22636 (Pubitemid 47310117)
10. Kukura P, Ewers H, Mller C, Renn A, Helenius A and Sandoghdar V 2009 High-speed nanoscopic tracking of the position and orientation of a single virus Nature Methods 6 9237
11. Bitler A, Lev N, Fridmann-Sirkis Y, Blank L, Cohen S R and Shai Y 2010 Kinetics of interaction of HIV fusion protein (gp41) with lipid membranes studied by real-time AFM imaging Ultramicroscopy 110 694700
12. Carneiro F A, Lapido-Loureiro P A, Cordo S M, Stauffer F, Weissmller G, Bianconi M L, Juliano M A, Juliano L, Bisch P M and Da Poian A T 2006 Probing the interaction between vesicular stomatitis virus and phosphatidylserine Eur. Biophys. J. 35 14554 (Pubitemid 43042773)
13. Bally M, Gunnarsson A, Svensson L, Larson G, Zhdanov V P and Hk F 2011 Interaction of single virus-like particles with vesicles containing glycosphingolipids Phys. Rev. Lett. 107 188103
14. Srivastava R, You L, Summers J and Yin J 2002 Stochastic versus deterministic modeling of intracellular viral kinetics J. Theor. Biol. 218 30921 (Pubitemid 35191831)
15. Zhdanov V P 2005 Monte Carlo simulation of bifurcation in the intracellular viral kinetics Phys. Biol. 2 4650 (Pubitemid 41238217)
16. Yin J 2007 Chemical engineering and virology: challenges and opportunities at the interface AICHE J. 53 22029 (Pubitemid 47388128)
17. Sidorenko Y, Voigt A, Schulze-Horsel J, Reichl U and Kienle A 2008 Stochastic population balance modeling of influenza virus replication in vaccine production processes: part II. Detailed description of the replication mechanism Chem. Eng. Sci. 63 2299304
18. Sardanyes J, Sole R V and Elena S F 2009 Replication mode and landscape topology differentially affect RNA virus mutational load and robustness J. Virol. 83 1257989
19. Sardanyes J and Elena S F 2011 Quasispecies spatial models for RNA viruses with different replication modes and infection strategies PLoS One 6 e24884
20. Zhdanov V P 2009 Intracellular viral kinetics limited by the supply of amino acids for synthesis of viral proteins BioSystems 97 11720
21. Zhdanov V P 2011 Interplay of viral miRNAs and host mRNAs and proteins Cent. Eur. J. Phys. 9 136671
22. Endres D and Zlotnick A 2002 Model-based analysis of assembly kinetics for virus capsids or other spherical polymers Biophys. J. 83 121730 (Pubitemid 34803652)
23. Zhdanov V P 2004 Stochastic kinetics of reproduction of virions inside a cell Biosyst. 77 14350 (Pubitemid 39452332)
24. Hicks S D and Henley C L 2006 Irreversible growth model for virus capsid assembly Phys. Rev. E 74 031912
25. Keef T, Micheletti C and Twarock R 2006 Master equation approach to the assembly of viral capsides J. Theor. Biol. 242 71321 (Pubitemid 44291703)
26. Klug W S, Bruinsma R F, Michel J-P, Knobler C M, Ivanovska I L, Schmidt C F and Wuite G J L 2006 Failure of viral shells Phys. Rev. Lett. 97 228101
27. Miao Y and Ortoleva PJ 2006 Viral structural transitions: an all-atom multiscale theory J. Chem. Phys. 125 214901
28. van der Schoot P and Zandi R 2007 Kinetic theory of virus capsid assembly Phys. Biol. 4 296304
29. Angelescu D G and Linse P 2008 Viruses as supramolecular self-assemblies: modelling of capsid formation and genome packaging Soft Matter 4 198190
30. Mannige R V and Brooks C L III 2008 Tilable nature of virus capsids and the role of topological constrains in natural capsid design Phys. Rev. E 77 051902
31. Siber A and Podgornik R 2008 Nonspecific interactions in spontaneous assembly of empty versus functional single-stranded RNA viruses Phys. Rev. E 78 051915
32. Chou T 2007 Stochastic entry of enveloped viruses: fusion versus endocytosis Biophys. J. 93 111623 (Pubitemid 47330892)
33. Chou T and DOrsogna M R 2007 Multistage adsorption of diffusing macromolecules and viruses J. Chem. Phys. 127 105101
34. Nowak S A and Chou T 2009 Mechanisms of receptor/coreceptor-mediated entry of enveloped viruses Biophys. J. 96 262436
35. Gibbons M M, Chou T and D'Orsogna M R 2010 Diffusion-dependent mechanisms of receptor engagement and viral entry J. Phys. Chem. B 114 1540312
36. Wennekes T, van den Berg Richard J B H N, Boot R G, van der Marel G A, Overkleeft H S and Aerts J M F G 2009 Glycosphingolipidsnature, function, and pharmacological modulation Angew. Chem. Int. Edn Engl. 48 884869
37. Kolter T 2011 A view on sphingolipids and disease Chem. Phys. Lipids 164 590606
38. Marsh M and Helenius A 2006 Virus entry: open sesame Cell 124 72940 (Pubitemid 43261448)
39. Rydell G E, Kindberg E, Larson G and Svensson L 2011 Susceptibility to winter vomiting disease: a sweet matter Rev. Med. Virol. 21 37082
40. Alberts B, Johnson A, Lewis J, Raff M, Roberts K and Walter P 2002 Molecular Biology of the Cell (New York: Garland)
41. Simons K and van Meers G 1988 Lipid sorting in epithelial cells Biochem. 27 6197202
42. Prasad B V V, Hardy M E, Dokland T, Bella J, Rossmann M G and Estes M K 1999 X-ray crystallographic structure of the Norwalk virus capsid Science 286 28790 (Pubitemid 29484691)
43. Choi J-M, Hutsona A M, Estes M K and Prasad B V V 2008 Atomic resolution structural characterization of recognition of histo-blood group antigens by Norwalk virus Proc. Natl Acad. Sci. USA 105 917580
44. http://www.rcsb.org/pdb/ (see also http://viperdb.scripps.edu/)
45. Patel M M, Hall A J, Vinje J and Parashar U D 2009 Noroviruses: a comprehensive review J. Clin. Virol. 44 18
46. Jiang X, Wang M, Graham D Y and Estes M K 1992 Expression, self-assembly, and antigenicity of the Norwalk virus capsid protein J. Virol. 66 652732
47. Rydell G E, Dahlin A B, Hk F and Larson G 2009 QCM-D studies of human norovirus VLPs binding to glycosphingolipids in supported lipid bilayers reveal strain-specific characteristics Glycobiology 19 117684
48. Binder W H, Barragan V and Menger F M 2003 Domains and rafts in lipid membranes Angew. Chem. Int. Edn Engl. 42 580227 (Pubitemid 38029589)
49. Eggeling C, Ringemann C, Medda R, Schwarzmann G Sandhoff K, Polyakova S, Belov V N, Hein B, von Middendorff C, Schnle A and Hell S W 2009 Direct observation of the nanoscale dynamics of membrane lipids in a living cell Nature 457 115963
50. Lingwood D and Simons K 2010 Lipid rafts as a membrane-organizing principle Science 327 4650
51. Fan J, Sammalkorpi M and Haataja M 2010 Formation and regulation of lipid microdomains in cell membranes: theory, modeling, and speculation FEBS Lett. 584 167884
52. Mouritsen O G 2011 Lipidology and lipidomicsquo vadis? A new era for the physical chemistry of lipids Phys. Chem. Chem. Phys. 13 19195205
53. Cozens-Roberts C, Lauffenburger D A and Quinn J A 1990 Receptor-mediated cell attachment and detachment kinetics: part 1. Probabilistic model and analysis Biophys. J. 58 84156 (Pubitemid 20307854)
54. Chesla S E, Selvaraj P and Zhu C 1998 Measuring two-dimensional receptor-ligand binding kinetics by micropipette Biophys. J. 75 155372 (Pubitemid 28397625)
55. Zhu C 2000 Kinetics and mechanics of cell adhesion J. Biomech. 33 2333
56. Weikl T R, Asfaw M, Krobath H, Rozycki B and Lipowsky R 2009 Adhesion of membranes via receptorligand complexes: domain formation, binding cooperativity, and active processes Soft Matter 5 321324
57. Rozycki B, Lipowsky R and Weikl T R 2010 Segregation of receptorligand complexes in cell adhesion zones: phase diagrams and the role of thermal membrane roughness New J. Phys. 12 095003
58. Yethiraj A and Weisshaar J C 2007 Why are lipid rafts not observed in vivo? Biophys. J. 93 31139 (Pubitemid 350097102)
59. Fan J, Sammalkorpi M and Haataja M 2008 Domain formation in the plasma membrane: roles of nonequilibrium lipid transport and membrane proteins Phys. Rev. Lett. 100 178102
60. Fan J, Sammalkorpi M and Haataja M 2010 Lipid microdomains: structural correlations, fluctuations, and formation mechanisms Phys. Rev. Lett. 104 118101
61. Hu J G, Weikl T and Lipowsky R 2011 Vesicles with multiple membrane domains Soft Matter 7 6092102
62. Risselada H J, Marrink S J and Muller M 2011 Curvature-dependent elastic properties of liquid-ordered domains result in inverted domain sorting on uniaxially compressed vesicles Phys. Rev. Lett. 106 148102
63. Niemela P S, Ollila S, Hyvonen M T, Karttunen M and Vattulainen I 2007 Assessing the nature of lipid raft membranes PLoS Comput. Biol. 3 e34
64. Mondal S and Mukhopadhyay C 2008 Molecular level investigation of organization in ternary lipid bilayer: a computational approach Langmuir 24 10298305
65. Risselada H J and Marrink S J 2008 The molecular face of lipid rafts in model membranes Proc. Natl Acad. Sci. USA 105 1736772
66. Hall A, Rog T, Karttunen M and Vattulainen I 2010 Role of glycolipids in lipid rafts: a view through atomistic molecular dynamics simulations with galactosylceramide J. Phys. Chem. B 114 7797807
67. Mon K K 1993 Monte Carlo studies of finite-size scaling in the Gibbs ensemble at criticality for the two-dimensional Ising model Phys. Rev. B 47 54979
68. Zhdanov V P 1991 Elementary Physicochemical Processes on Solid Surfaces (New York: Plenum)
69. Manzi S J, Huespe V J, Belardinelli R E and Pereyra V D 2009 Hard versus soft dynamics for adsorptiondesorption kinetics: exact results in one-dimension Phys. Rev. E 80 051112
70. de Almeida R F M, Fedorov A and Prieto M 2003 Sphingomyelin/ phosphatidylcholine/cholesterol phase diagram: boundaries and composition of lipid rafts Biophys. J. 85 240616 (Pubitemid 37210789)