SCOPUS 정보 검색 플랫폼

Journal of Chemical Physics

Volumn 125, Issue 21, 2006, Pages

Viral structural transitions: An all-atom multiscale theory

(2) Miao, Yinglong a Ortoleva, Peter J a

a INDIANA UNIVERSITY (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALIBRATION; CRYSTAL ATOMIC STRUCTURE; ELECTRON TRANSITIONS; ELECTRONIC STRUCTURE; FREE ENERGY; NANOSTRUCTURED MATERIALS; STATISTICAL MECHANICS;

FOKKER-PLANCK EQUATION; INTERATOMIC FORCE FIELD; LIOUVILLE EQUATION; MULTISCALE THEORY; STRUCTURAL TRANSITIONS;

MOLECULAR DYNAMICS;

NANOPARTICLE; VIRUS PROTEIN;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; PHASE TRANSITION; THERMODYNAMICS; VIRUS; VIRUS ASSEMBLY;

COMPUTER SIMULATION; MODELS, MOLECULAR; NANOPARTICLES; PHASE TRANSITION; THERMODYNAMICS; VIRAL PROTEINS; VIRUS ASSEMBLY; VIRUSES;

EID: 33845386474 PISSN: 00219606 EISSN: None Source Type: Journal
DOI: 10.1063/1.2400858 Document Type: Article

Times cited : (40)

References (54)

1
- 0029643791
- J. A. Speir, S. Munshi, G. Wang, T. S. Baker, and J. E. Johnson, Structure (London) 3, 63 (1995).
- (1995) Structure (London) , vol.3 , pp. 63
- Speir, J.A.¹ Munshi, S.² Wang, G.³ Baker, T.S.⁴ Johnson, J.E.⁵

2
- 0031588020
- J. E. Johnson and J. A. Speir, J. Mol. Biol. 269, 665 (1997).
- (1997) J. Mol. Biol. , vol.269 , pp. 665
- Johnson, J.E.¹ Speir, J.A.²

3
- 0037764817
- H. Liu, C. Qu, J. E. Johnson, and D. A. Case, J. Struct. Biol. 142, 356 (2003).
- (2003) J. Struct. Biol. , vol.142 , pp. 356
- Liu, H.¹ Qu, C.² Johnson, J.E.³ Case, D.A.⁴

4
- 27744466367
- L. O. Liepold, J. Revis, M. Allen, L. Oltrogge, M. Young, and T. Douglas, Phys. Biol. 2, S166 (2005).
- (2005) Phys. Biol. , vol.2 , pp. 166
- Liepold, L.O.¹ Revis, J.² Allen, M.³ Oltrogge, L.⁴ Young, M.⁵ Douglas, T.⁶

5
- 33645210983
- J. A. Speir, B. Bothner, C. Qu, D. A. Willits, M. J. Young, and J. E. Johnson, J. Virol. 80, 3582 (2006).
- (2006) J. Virol. , vol.80 , pp. 3582
- Speir, J.A.¹ Bothner, B.² Qu, C.³ Willits, D.A.⁴ Young, M.J.⁵ Johnson, J.E.⁶

6
- 0034625320
- M. A. Canady, M. Tihova, T. N. Hanzlik, J. E. Johnson, and M. Yeager, J. Mol. Biol. 299, 573 (2000).
- (2000) J. Mol. Biol. , vol.299 , pp. 573
- Canady, M.A.¹ Tihova, M.² Hanzlik, T.N.³ Johnson, J.E.⁴ Yeager, M.⁵

7
- 0035943387
- M. A. Canady, H. Tsuruta, and J. E. Johnson, J. Mol. Biol. 311, 803 (2001).
- (2001) J. Mol. Biol. , vol.311 , pp. 803
- Canady, M.A.¹ Tsuruta, H.² Johnson, J.E.³

8
- 0036776532
- D. J. Taylor, N. K. Krishna, M. A. Canady, A. Schneemann, and J. E. Johnson, J. Virol. 76, 9972 (2002).
- (2002) J. Virol. , vol.76 , pp. 9972
- Taylor, D.J.¹ Krishna, N.K.² Canady, M.A.³ Schneemann, A.⁴ Johnson, J.E.⁵

9
- 0344099412
- D. J. Taylor, Q. Wang, B. Bothner, P. Natarajan, M. G. Finn, and J. E. Johnson, Chem. Commun. (Cambridge) 2003, 2770.
- Chem. Commun. (Cambridge) , vol.2003 , pp. 2770
- Taylor, D.J.¹ Wang, Q.² Bothner, B.³ Natarajan, P.⁴ Finn, M.G.⁵ Johnson, J.E.⁶

10
- 24044471822
- K. K. Lee, H. Tsuruta, R. W. Hendrix, R. L. Duda, and J. E. Johnson, J. Mol. Biol. 352, 723 (2005).
- (2005) J. Mol. Biol. , vol.352 , pp. 723
- Lee, K.K.¹ Tsuruta, H.² Hendrix, R.W.³ Duda, R.L.⁴ Johnson, J.E.⁵

11
- 32544460955
- W. R. Wikoff, J. F. Conway, J. Tang, K. K. Lee, L. Gan, N. Cheng, R. L. Duda, R. W. Hendrix, A. C. Steven, and J. E. Johnson, J. Struct. Biol. 153, 300 (2006).
- (2006) J. Struct. Biol. , vol.153 , pp. 300
- Wikoff, W.R.¹ Conway, J.F.² Tang, J.³ Lee, K.K.⁴ Gan, L.⁵ Cheng, N.⁶ Duda, R.L.⁷ Hendrix, R.W.⁸ Steven, A.C.⁹ Johnson, J.E.¹⁰

12
- 0025273268
- C. E. Fricks and J. M. Hogle, J. Virol. 64, 1934 (1990).
- (1990) J. Virol. , vol.64 , pp. 1934
- Fricks, C.E.¹ Hogle, J.M.²

13
- 0033977270
- D. M. Belnap, D. J. Filman, B. L. Trus, J. Virol. 74, 1342 (2000).
- (2000) J. Virol. , vol.74 , pp. 1342
- Belnap, D.M.¹ Filman, D.J.² Trus, B.L.³

14
- 0034602709
- D. M. Belnap, B. M. McDermott, D. J. Filman, N. Cheng, B. L. Trus, H. J. Zuccola, V. R. Racaniello, J. M. Hogle, and A. C. Steven, Proc. Natl. Acad. Sci. U.S.A. 97, 73 (2000).
- (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 73
- Belnap, D.M.¹ McDermott, B.M.² Filman, D.J.³ Cheng, N.⁴ Trus, B.L.⁵ Zuccola, H.J.⁶ Racaniello, V.R.⁷ Hogle, J.M.⁸ Steven, A.C.⁹

15
- 0035039737
- S. K. Tsang, B. M. Mcdermott, V. R. Racaniello, and J. M. Hogle, J. Virol. 75, 4984 (2001).
- (2001) J. Virol. , vol.75 , pp. 4984
- Tsang, S.K.¹ McDermott, B.M.² Racaniello, V.R.³ Hogle, J.M.⁴

16
- 0036403802
- J. M. Hogle, Annu. Rev. Microbiol. 56, 677 (2002).
- (2002) Annu. Rev. Microbiol. , vol.56 , pp. 677
- Hogle, J.M.¹

17
- 0031807139
- D. Harries, S. May, W. M. Gelbart, and A. Ben-Shaul, Biophys. J. 75, 159 (1998).
- (1998) Biophys. J. , vol.75 , pp. 159
- Harries, D.¹ May, S.² Gelbart, W.M.³ Ben-Shaul, A.⁴

18
- 0035138090
- B. Speelman, B. R. Brooks, and C. B. Post, Biophys. J. 80, 121 (2001).
- (2001) Biophys. J. , vol.80 , pp. 121
- Speelman, B.¹ Brooks, B.R.² Post, C.B.³

19
- 0010915520
- J. Durup, J. Phys. Chem. 95, 1817 (1991).
- (1991) J. Phys. Chem. , vol.95 , pp. 1817
- Durup, J.¹

20
- 0012515413
- M. Tuckerman and B. J. Berne, J. Chem. Phys. 95, 8362 (1991).
- (1991) J. Chem. Phys. , vol.95 , pp. 8362
- Tuckerman, M.¹ Berne, B.J.²

21
- 36449001478
- M. Tuckerman, B. J. Berne, and G. J. Martyna, J. Chem. Phys. 94, 6811 (1991).
- (1991) J. Chem. Phys. , vol.94 , pp. 6811
- Tuckerman, M.¹ Berne, B.J.² Martyna, G.J.³

22
- 33746831036
- A. Askar, B. Space, and H. Rabitz, J. Phys. Chem. 99, 7330 (1995).
- (1995) J. Phys. Chem. , vol.99 , pp. 7330
- Askar, A.¹ Space, B.² Rabitz, H.³

23
- 0001787214
- S. Reich, Physica D 89, 28 (1995).
- (1995) Physica D , vol.89 , pp. 28
- Reich, S.¹

24
- 0029619776
- D. K. Phelps and C. B. Post, J. Mol. Biol. 254, 544 (1995).
- (1995) J. Mol. Biol. , vol.254 , pp. 544
- Phelps, D.K.¹ Post, C.B.²

25
- 0032548990
- D. K. Phelps, P. J. Rossky, and C. B. Post, J. Mol. Biol. 276, 331 (1995).
- (1995) J. Mol. Biol. , vol.276 , pp. 331
- Phelps, D.K.¹ Rossky, P.J.² Post, C.B.³

26
- 0032401002
- J. Elezgaray and Y. H. Sanejouand, Biopolymers 46, 493 (1998).
- (1998) Biopolymers , vol.46 , pp. 493
- Elezgaray, J.¹ Sanejouand, Y.H.²

27
- 0005182860
- J. Elezgaray and Y. H. Sanejouand, J. Comput. Chem. 21, 1274 (2000).
- (2000) J. Comput. Chem. , vol.21 , pp. 1274
- Elezgaray, J.¹ Sanejouand, Y.H.²

28
- 0001585978
- K. A. Feenstra, B. Hess, and H. J. C. Berendsen, J. Comput. Chem. 20, 786 (1999).
- (1999) J. Comput. Chem. , vol.20 , pp. 786
- Feenstra, K.A.¹ Hess, B.² Berendsen, H.J.C.³

29
- 0033688171
- M. R. Sorensen and A. F. Voter, J. Chem. Phys. 112, 9599 (2000).
- (2000) J. Chem. Phys. , vol.112 , pp. 9599
- Sorensen, M.R.¹ Voter, A.F.²

30
- 0002133110
- H. M. Chun, C. E. Padilla, D. N. Chin, J. Comput. Chem. 21, 159 (2000).
- (2000) J. Comput. Chem. , vol.21 , pp. 159
- Chun, H.M.¹ Padilla, C.E.² Chin, D.N.³

31
- 0036307741
- F. Tama and C. L. Brooks III, J. Mol. Biol. 318, 733 (2002).
- (2002) J. Mol. Biol. , vol.318 , pp. 733
- Tama, F.¹ Brooks Iii, C.L.²

32
- 9644266693
- F. Tama and C. L. Brooks III, J. Mol. Biol. 345, 299 (2005).
- (2005) J. Mol. Biol. , vol.345 , pp. 299
- Tama, F.¹ Brooks Iii, C.L.²

33
- 0035827783
- H. W. T. van Vlijmen and M. Karplus, J. Chem. Phys. 115, 691 (2001).
- (2001) J. Chem. Phys. , vol.115 , pp. 691
- Van Vlijmen, H.W.T.¹ Karplus, M.²

34
- 20444440419
- H. W. T. van Vlijmen and M. Karplus, J. Mol. Biol. 350, 528 (2005).
- (2005) J. Mol. Biol. , vol.350 , pp. 528
- Van Vlijmen, H.W.T.¹ Karplus, M.²

35
- 33746789370
- Y. Miao and P. Ortoleva, J. Chem. Phys. 125, 044901 (2006).
- (2006) J. Chem. Phys. , vol.125 , pp. 044901
- Miao, Y.¹ Ortoleva, P.²

36
- 33644848399
- P. L. Freddolino, A. S. Arkhipov, S. B. Larson, A. McPherson, and K. Schulten, Structure (London) 14, 437 (2006).
- (2006) Structure (London) , vol.14 , pp. 437
- Freddolino, P.L.¹ Arkhipov, A.S.² Larson, S.B.³ McPherson, A.⁴ Schulten, K.⁵

37
- 0001673030
- S. Chandrasekhar, Astrophys. J. 97, 255 (1943).
- (1943) Astrophys. J. , vol.97 , pp. 255
- Chandrasekhar, S.¹

38
- 37049088561
- J. M. Deutch and I. Oppenheim, Faraday Discuss. Chem. Soc. 83, 1 (1987).
- (1987) Faraday Discuss. Chem. Soc. , vol.83 , pp. 1
- Deutch, J.M.¹ Oppenheim, I.²

39
- 33748400386
- J. E. Shea and I. Oppenheim, J. Phys. Chem. 100, 19035 (1996).
- (1996) J. Phys. Chem. , vol.100 , pp. 19035
- Shea, J.E.¹ Oppenheim, I.²

40
- 0041324187
- M. H. Peters, J. Chem. Phys. 110, 528 (1998).
- (1998) J. Chem. Phys. , vol.110 , pp. 528
- Peters, M.H.¹

41
- 0033070796
- M. H. Peters, J. Stat. Phys. 94, 557 (1999).
- (1999) J. Stat. Phys. , vol.94 , pp. 557
- Peters, M.H.¹

42
- 0031361338
- J. E. Shea and I. Oppenheim, Physica A 247, 417 (1997).
- (1997) Physica A , vol.247 , pp. 417
- Shea, J.E.¹ Oppenheim, I.²

43
- 28144448852
- P. Ortoleva, J. Phys. Chem. 109, 21258 (2005).
- (2005) J. Phys. Chem. , vol.109 , pp. 21258
- Ortoleva, P.¹

44
- 0002213992
- S. Bose and P. Ortoleva, J. Chem. Phys. 70, 3041 (1979).
- (1979) J. Chem. Phys. , vol.70 , pp. 3041
- Bose, S.¹ Ortoleva, P.²

45
- 0036489115
- K. Jaqaman and P. Ortoleva, J. Comput. Chem. 23, 484 (2002).
- (2002) J. Comput. Chem. , vol.23 , pp. 484
- Jaqaman, K.¹ Ortoleva, P.²

46
- 36449006356
- B. Dünweg and K. Kremer, J. Chem. Phys. 99, 6983 (1993).
- (1993) J. Chem. Phys. , vol.99 , pp. 6983
- Dünweg, B.¹ Kremer, K.²

47
- 0031281044
- A. Korpf, B. Dünweg, and W. Paul, J. Chem. Phys. 107, 6945 (1997).
- (1997) J. Chem. Phys. , vol.107 , pp. 6945
- Korpf, A.¹ Dünweg, B.² Paul, W.³

48
- 0000031708
- P. Ahrichs and B. Dünweg, J. Chem. Phys. 111, 8225 (1999).
- (1999) J. Chem. Phys. , vol.111 , pp. 8225
- Ahrichs, P.¹ Dünweg, B.²

49
- 0038514201
- B. Liu and B. Dünweg, J. Chem. Phys. 118, 8061 (2003).
- (2003) J. Chem. Phys. , vol.118 , pp. 8061
- Liu, B.¹ Dünweg, B.²

50
- 0142242180
- T. Ohmoria and Y. Kimura, J. Chem. Phys. 119, 7328 (2002).
- (2002) J. Chem. Phys. , vol.119 , pp. 7328
- Ohmoria, T.¹ Kimura, Y.²

51
- 32844459794
- A. Uvarov and S. Fritzsche, Phys. Rev. E 73, 011111 (2006).
- (2006) Phys. Rev. E , vol.73 , pp. 011111
- Uvarov, A.¹ Fritzsche, S.²

52
- 4544276958
- A. Uvarov and S. Fritzsche, Macromol. Theory Simul. 13, 241 (2004).
- (2004) Macromol. Theory Simul. , vol.13 , pp. 241
- Uvarov, A.¹ Fritzsche, S.²

53
- 0037705348
- S. Singh and A. Zlotnick, J. Biol. Chem. 278, 18249 (2003).
- (2003) J. Biol. Chem. , vol.278 , pp. 18249
- Singh, S.¹ Zlotnick, A.²

54
- 0034681288
- S. K. Tsang, P. Danthi, M. Chow, and J. M. Hogle, J. Mol. Biol. 296, 335 (2000).
- (2000) J. Mol. Biol. , vol.296 , pp. 335
- Tsang, S.K.¹ Danthi, P.² Chow, M.³ Hogle, J.M.⁴

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.