-
2
-
-
79953652546
-
-
JCOMEL 0953-8984 10.1088/0953-8984/23/15/153102
-
G. Tkačik and A. M. Walczak, J. Phys.: Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/23/15/153102 23, 153102 (2011).
-
(2011)
J. Phys.: Condens. Matter
, vol.23
, pp. 153102
-
-
Tkačik, G.1
Walczak, A.M.2
-
4
-
-
48349119924
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.78.011910
-
G. Tkačik, C. G. Callan Jr., and W. Bialek, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.78.011910 78, 011910 (2008).
-
(2008)
Phys. Rev. e
, vol.78
, pp. 011910
-
-
Tkačik, G.1
Callan, Jr.C.G.2
Bialek, W.3
-
5
-
-
0036678794
-
-
PNASA6 0027-8424 10.1073/pnas.152046799
-
M. Ronen, R. Rosenberg, B. I. Shraiman, and U. Alon, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.152046799 99, 10555 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 10555
-
-
Ronen, M.1
Rosenberg, R.2
Shraiman, B.I.3
Alon, U.4
-
6
-
-
70349976815
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.80.031920
-
G. Tkačik, A. M. Walczak, and W. Bialek, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.80.031920 80, 031920 (2009).
-
(2009)
Phys. Rev. e
, vol.80
, pp. 031920
-
-
Tkačik, G.1
Walczak, A.M.2
Bialek, W.3
-
7
-
-
77950960454
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.81.041905
-
A. M. Walczak, G. Tkačik, and W. Bialek, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.81.041905 81, 041905 (2010).
-
(2010)
Phys. Rev. e
, vol.81
, pp. 041905
-
-
Walczak, A.M.1
Tkačik, G.2
Bialek, W.3
-
8
-
-
0036578795
-
-
NGENEC 1061-4036 10.1038/ng881
-
S. S. Shen-Orr, R. Milo, S. Mangan, and U. Alon, Nat. Genet. NGENEC 1061-4036 10.1038/ng881 31, 64 (2002).
-
(2002)
Nat. Genet.
, vol.31
, pp. 64
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
9
-
-
13444262374
-
EcoCyc: A comprehensive database resource for Escherichia coli
-
DOI 10.1093/nar/gki108
-
I. M. Keseler, J. Collado-Vides, S. Gama-Castro, J. Ingreham, S. Paley, Nucl. Acids Res. NARHAD 0305-1048 10.1093/nar/gki108 33, D334 (2005). (Pubitemid 40207890)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Keseler, I.M.1
Collado-Vides, J.2
Gama-Castro, S.3
Ingraham, J.4
Paley, S.5
Paulsen, I.T.6
Peralta-Gil, M.7
Karp, P.D.8
-
11
-
-
15744387380
-
Transcriptional regulation by the numbers: Models
-
DOI 10.1016/j.gde.2005.02.007, Chromosomes and Expression Mechanisms
-
L. Bintu, N. E. Buchler, H. G. Garcia, U. Gerland, T. Hwa, J. Kondev, and R. Phillips, Curr. Opin. Genet. Dev. COGDET 0959-437X 10.1016/j.gde.2005.02.007 15, 116 (2005). (Pubitemid 40410659)
-
(2005)
Current Opinion in Genetics and Development
, vol.15
, Issue.2
, pp. 116-124
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
Kondev, J.6
Phillips, R.7
-
12
-
-
15744387380
-
Transcriptional regulation by the numbers: Applications
-
DOI 10.1016/j.gde.2005.02.006, Chromosomes and Expression Mechanisms
-
L. Bintu, N. E. Buchler, H. G. Garcia, U. Gerland, T. Hwa, J. Kondev, T. Kuhlman, and R. Phillips, Curr. Opin. Genet. Dev. COGDET 0959-437X 10.1016/j.gde.2005.02.006 15, 125 (2005). (Pubitemid 40410660)
-
(2005)
Current Opinion in Genetics and Development
, vol.15
, Issue.2
, pp. 125-135
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
Kondev, J.6
Kuhlman, T.7
Phillips, R.8
-
13
-
-
0036428761
-
Negative autoregulation speeds the response times of transcription networks
-
DOI 10.1016/S0022-2836(02)00994-4
-
N. Rosenfeld, M. B. Elowitz, and U. Alon, J. Mol. Biol. JMOBAK 0022-2836 10.1016/S0022-2836(02)00994-4 323, 785 (2002). (Pubitemid 35341055)
-
(2002)
Journal of Molecular Biology
, vol.323
, Issue.5
, pp. 785-793
-
-
Rosenfeld, N.1
Elowitz, M.B.2
Alon, U.3
-
14
-
-
0034212551
-
Engineering stability in gene networks by autoregulation
-
DOI 10.1038/35014651
-
A. Becksei and L. Serrano, Nature NATUAS 0028-0836 10.1038/35014651 405, 590 (2000). (Pubitemid 30367734)
-
(2000)
Nature
, vol.405
, Issue.6786
, pp. 590-593
-
-
Becskel, A.1
Serrano, L.2
-
15
-
-
17144456808
-
Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion
-
DOI 10.1093/emboj/20.10.2528
-
A. Becksei, B. Seraphin, and L. Serrano, EMBO J. EMJODG 0261-4189 10.1093/emboj/20.10.2528 20, 2528 (2001). (Pubitemid 32452871)
-
(2001)
EMBO Journal
, vol.20
, Issue.10
, pp. 2528-2535
-
-
Becskei, A.1
Seraphin, B.2
Serrano, L.3
-
16
-
-
0037965981
-
On schemes of combinatorial transcription logic
-
DOI 10.1073/pnas.0930314100
-
N. E. Buchler, U. Gerland, and T. Hwa, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0930314100 100, 5136 (2003). (Pubitemid 36542671)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.9
, pp. 5136-5141
-
-
Buchler, N.E.1
Gerland, U.2
Hwa, T.3
-
18
-
-
0347867303
-
-
in edited by T. K. Leen, T. G. Dietterich, and V. Tresp (MIT Press, Cambridge
-
W. Bialek, in Advances in Neural Information Processing Systems, edited by, T. K. Leen, T. G. Dietterich, and, V. Tresp, (MIT Press, Cambridge, 2001), pp. 103-109.
-
(2001)
Advances in Neural Information Processing Systems
, pp. 103-109
-
-
Bialek, W.1
-
19
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
DOI 10.1038/35002131
-
T. S. Gardner, C. R. Cantor, and J. J. Collins, Nature NATUAS 0028-0836 10.1038/35002131 403, 339 (2000). (Pubitemid 30062394)
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
20
-
-
34447099234
-
Probing the Limits to Positional Information
-
DOI 10.1016/j.cell.2007.05.025, PII S0092867407006629
-
T. Gregor, D. W. Tank, E. F. Wieschaus, and W. Bialek, Cell CELLB5 0092-8674 10.1016/j.cell.2007.05.025 130, 153 (2007). (Pubitemid 47031318)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 153-164
-
-
Gregor, T.1
Tank, D.W.2
Wieschaus, E.F.3
Bialek, W.4
-
21
-
-
72449190160
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.103.258101
-
T. Erdmann, M. Howard, and P. R. ten Wolde, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.103.258101 103, 258101 (2009).
-
(2009)
Phys. Rev. Lett.
, vol.103
, pp. 258101
-
-
Erdmann, T.1
Howard, M.2
Ten Wolde, P.R.3
-
23
-
-
79953661480
-
-
1553-734X 10.1371/journal.pcbi.1001100
-
A. Sanchez, H. G. Garcia, D. Jones, R. Phillips, and J. Kondev, PLoS Comput. Biol. 1553-734X 10.1371/journal.pcbi.1001100 7, e1001100 (2011).
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. 1001100
-
-
Sanchez, A.1
Garcia, H.G.2
Jones, D.3
Phillips, R.4
Kondev, J.5
-
24
-
-
0035193294
-
-
BIOJAU 0006-3495 10.1016/S0006-3495(01)75949-8
-
T. B. Kepler and T. C. Elston, Biophys. J. BIOJAU 0006-3495 10.1016/S0006-3495(01)75949-8 81, 3116 (2001).
-
(2001)
Biophys. J.
, vol.81
, pp. 3116
-
-
Kepler, T.B.1
Elston, T.C.2
-
26
-
-
0037119587
-
Stochastic gene expression in a single cell
-
DOI 10.1126/science.1070919
-
M. B. Elowitz, A. J. Levine, E. D. Siggia, and P. D. Swain, Science SCIEAS 0036-8075 10.1126/science.1070919 297, 1183 (2002). (Pubitemid 36193353)
-
(2002)
Science
, vol.297
, Issue.5584
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
27
-
-
0036578645
-
-
NGENEC 1061-4036 10.1038/ng869
-
E. Ozbudak, M. Thattai, I. Kurtser, A. D. Grossman, and A. van Oudenaarden, Nat. Genet. NGENEC 1061-4036 10.1038/ng869 31, 69 (2002).
-
(2002)
Nat. Genet.
, vol.31
, pp. 69
-
-
Ozbudak, E.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
Van Oudenaarden, A.5
-
28
-
-
0242416539
-
Noise in eukaryotic gene expression
-
DOI 10.1038/nature01546
-
W. J. Blake, M. Kaern, C. R. Cantor, and J. J. Collins, Nature NATUAS 0028-0836 10.1038/nature01546 422, 633 (2003). (Pubitemid 36460419)
-
(2003)
Nature
, vol.422
, Issue.6932
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
29
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
DOI 10.1126/science.1098641
-
J. M. Raser and E. K. O'Shea, Science SCIEAS 0036-8075 10.1126/science.1098641 304, 1811 (2004). (Pubitemid 38787899)
-
(2004)
Science
, vol.304
, Issue.5678
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
30
-
-
15544371346
-
Gene regulation at the single-cell level
-
DOI 10.1126/science.1106914
-
N. Rosenfeld, J. W. Young, U. Alon, P. S. Swain, and M. B. Elowitz, Science SCIEAS 0036-8075 10.1126/science.1106914 307, 1962 (2005). (Pubitemid 40404705)
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
31
-
-
15544388848
-
Noise propagations in gene networks
-
DOI 10.1126/science.1109090
-
J. M. Pedraza and A. van Oudenaarden, Science SCIEAS 0036-8075 10.1126/science.1109090 307, 1965 (2005). (Pubitemid 40404706)
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1965-1969
-
-
Pedraza, J.H.1
Van Oudenaarden, A.2
-
32
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
DOI 10.1016/j.cell.2005.09.031, PII S0092867405010378
-
I. Golding, J. Paulsson, S. M. Zawilski, and E. C. Cox, Cell CELLB5 0092-8674 10.1016/j.cell.2005.09.031 123, 1025 (2005). (Pubitemid 41785418)
-
(2005)
Cell
, vol.123
, Issue.6
, pp. 1025-1036
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.M.3
Cox, E.C.4
-
34
-
-
79957608918
-
-
NGENEC 1061-4036 10.1038/ng.821
-
L. H. So, A. Ghosh, C. Zong, L. A. Sepúlveda, R. Segev, and I. Golding, Nat. Genet. NGENEC 1061-4036 10.1038/ng.821 43, 554 (2011).
-
(2011)
Nat. Genet.
, vol.43
, pp. 554
-
-
So, L.H.1
Ghosh, A.2
Zong, C.3
Sepúlveda, L.A.4
Segev, R.5
Golding, I.6
-
35
-
-
0042622638
-
DNA looping and physical constraints on transcription regulation
-
DOI 10.1016/S0022-2836(03)00764-2
-
J. M. G. Vilar and S. Leibler, J. Mol. Biol. JMOBAK 0022-2836 10.1016/S0022-2836(03)00764-2 331, 981 (2003). (Pubitemid 36969959)
-
(2003)
Journal of Molecular Biology
, vol.331
, Issue.5
, pp. 981-989
-
-
Vilar, J.M.G.1
Leibler, S.2
-
36
-
-
54049095551
-
-
and J. M., 1751-8849 10.1049/iet-syb:20080091
-
L. Saiz and J. M. G. Vilar, IET Systems Biol. 1751-8849 10.1049/iet-syb:20080091 2, 247 (2008).
-
(2008)
IET Systems Biol.
, vol.2
, pp. 247
-
-
Saiz, L.1
Vilar, G.2
-
37
-
-
42549099171
-
Optimal signal processing in small stochastic biochemical networks
-
DOI 10.1371/journal.pone.0001077
-
E. Ziv, I. Nemenman, and C. H. Wiggins, PLoS ONE 1932-6203 10.1371/journal.pone.0001077 2, e1077 (2007). (Pubitemid 351575070)
-
(2007)
PLoS ONE
, vol.2
, Issue.10
-
-
Ziv, E.1
Nemenman, I.2
Wiggins, C.H.3
-
40
-
-
66549110304
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.79.051901
-
G. Tkačik and W. Bialek, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.79.051901 79, 051901 (2007).
-
(2007)
Phys. Rev. e
, vol.79
, pp. 051901
-
-
Tkačik, G.1
Bialek, W.2
-
41
-
-
50449099063
-
-
1932-6203 10.1371/journal.pone.0002774
-
G. Tkačik, T. Gregor, and W. Bialek, PLoS One 1932-6203 10.1371/journal.pone.0002774 3, e2774 (2008).
-
(2008)
PLoS One
, vol.3
, pp. 2774
-
-
Tkačik, G.1
Gregor, T.2
Bialek, W.3
-
43
-
-
78651189765
-
-
JMOBAK 0022-2836 10.1016/S0022-2836(65)80285-6
-
J. Monod, J. Wyman, and J. P. Changeux, J. Mol. Biol. JMOBAK 0022-2836 10.1016/S0022-2836(65)80285-6 12, 88 (1965).
-
(1965)
J. Mol. Biol.
, vol.12
, pp. 88
-
-
Monod, J.1
Wyman, J.2
Changeux, J.P.3
-
44
-
-
78651107675
-
-
PNASA6 0027-8424 10.1073/pnas.0913805107
-
L. A. Mirny, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0913805107 107, 22534 (2010).
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 22534
-
-
Mirny, L.A.1
-
45
-
-
78651369529
-
-
1420-682X 10.1007/s00018-010-0536-y
-
J. Jaeger, Cell Mol. Life Sci. 1420-682X 10.1007/s00018-010-0536-y 68, 243 (2011).
-
(2011)
Cell Mol. Life Sci.
, vol.68
, pp. 243
-
-
Jaeger, J.1
-
46
-
-
80052446671
-
-
J., NARHAD 0305-1048 10.1093/nar/gkr272
-
J. M. G. Vilar and L. Saiz, Nucl. Acids Res. NARHAD 0305-1048 10.1093/nar/gkr272 39, 6854 (2011).
-
(2011)
Nucl. Acids Res.
, vol.39
, pp. 6854
-
-
Vilar, M.G.1
Saiz, L.2
-
47
-
-
80053355340
-
-
BIOJAU 0006-3495 10.1016/j.bpj.2011.07.004
-
F. Nicol-Benoit, A. Amon, C. Vaillant, P. le Goff, Y. le Drean, F. Pakdel, G. Flouriot, Y. Valotaire, and D. Michel, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2011.07.004 101, 1557 (2011).
-
(2011)
Biophys. J.
, vol.101
, pp. 1557
-
-
Nicol-Benoit, F.1
Amon, A.2
Vaillant, C.3
Le Goff, P.4
Le Drean, Y.5
Pakdel, F.6
Flouriot, G.7
Valotaire, Y.8
Michel, D.9
-
48
-
-
22144443131
-
Nonlinear protein degradation and the function of genetic circuits
-
DOI 10.1073/pnas.0409553102
-
N. E. Buchler, U. Gerland, and T. Hwa, Proc. Natl. Acad. Sci. USA 0027-8424 10.1073/pnas.0409553102 102, 9559 (2005). (Pubitemid 40981720)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.27
, pp. 9559-9564
-
-
Buchler, N.E.1
Gerland, U.2
Hwa, T.3
|