-
1
-
-
13444262374
-
Ecocyc: A comprehensive database resource for Escherichia coli
-
Keseler IM, Collado-Vides J, Gama-Castro S, Ingraham J, Paley S, et al. (2005) Ecocyc: a comprehensive database resource for Escherichia coli. Nucl Acids Res 33: D334-337.
-
(2005)
Nucl Acids Res
, vol.33
-
-
Keseler, I.M.1
Collado-Vides, J.2
Gama-Castro, S.3
Ingraham, J.4
Paley, S.5
-
2
-
-
0035162782
-
RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli k-12
-
Salgado H, Santos-Zavaleta A, Gama-Castro S, Millan-Zarate D, Diaz-Peredo E, et al. (2001) RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli k-12. Nucl Acids Res 29: 72-74.
-
(2001)
Nucl Acids Res
, vol.29
, pp. 72-74
-
-
Salgado, H.1
Santos-Zavaleta, A.2
Gama-Castro, S.3
Millan-Zarate, D.4
Diaz-Peredo, E.5
-
3
-
-
0032077377
-
From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in Escherichia coli
-
Thieffry D, Huerta AM, Perez-Rueda E, Collado-Vides J (1998) From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli. Bioessays 20: 433-440.
-
(1998)
Bioessays
, vol.20
, pp. 433-440
-
-
Thieffry, D.1
Huerta, A.M.2
Perez-Rueda, E.3
Collado-Vides, J.4
-
4
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shen-Orr SS, Milo R, Mangan S, Alon U (2002) Network motifs in the transcriptional regulation network of Escherichia coli. Nat Genet 31: 64-68.
-
(2002)
Nat Genet
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
5
-
-
0034212551
-
Engineering stability in gene networks by autoregulation
-
Becskei A, Serrano L (2000) Engineering stability in gene networks by autoregulation. Nature 405: 590-593.
-
(2000)
Nature
, vol.405
, pp. 590-593
-
-
Becskei, A.1
Serrano, L.2
-
7
-
-
40649083597
-
Strong negative self regulation of prokaryotic transcription factors increases the intrinsic noise of protein expression
-
Stekel DJ, Jenkins DJ (2008) Strong negative self regulation of prokaryotic transcription factors increases the intrinsic noise of protein expression. BMC Syst Biol 2: 6.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 6
-
-
Stekel, D.J.1
Jenkins, D.J.2
-
8
-
-
72249097352
-
Growth rate dependent global effects on gene expression in bacteria (in press)
-
Klumpp S, Zhang Z, Hwa T (2009) Growth rate dependent global effects on gene expression in bacteria (in press). Cell.
-
(2009)
Cell
-
-
Klumpp, S.1
Zhang, Z.2
Hwa, T.3
-
9
-
-
0016145568
-
Comparison of classical and autogenous systems of regulation in inducible operons
-
Savageau MA (1974) Comparison of classical and autogenous systems of regulation in inducible operons. Nature 252: 546-549.
-
(1974)
Nature
, vol.252
, pp. 546-549
-
-
Savageau, M.A.1
-
10
-
-
0036428761
-
Negative autoregulation speeds the response times of transcription networks
-
Rosenfeld N, Elowitz MB, Alon U (2002) Negative autoregulation speeds the response times of transcription networks. J Mol Biol 323: 785-793.
-
(2002)
J Mol Biol
, vol.323
, pp. 785-793
-
-
Rosenfeld, N.1
Elowitz, M.B.2
Alon, U.3
-
11
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403: 335-338.
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
12
-
-
38949194331
-
Noise propagation and signaling sensitivity in biological networks: A role for positive feedback
-
Hornung G, Barkai N (2008) Noise propagation and signaling sensitivity in biological networks: A role for positive feedback. PLoS Computational Biology 4: e8.
-
(2008)
PLoS Computational Biology
, vol.4
-
-
Hornung, G.1
Barkai, N.2
-
13
-
-
62549083590
-
Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression
-
Nevozhay D, Adams RM, Murphy KF, Josic K, Balázsi G (2009) Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression. Proc Natl Acad Sci U S A 106: 5123-8.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 5123-5128
-
-
Nevozhay, D.1
Adams, R.M.2
Murphy, K.F.3
Josic, K.4
Balázsi, G.5
-
14
-
-
17144456808
-
Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion
-
Becskei A, Se ́raphin B, Serrano L (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. EMBO J 20: 2528-35.
-
(2001)
EMBO J
, vol.20
, pp. 2528-2535
-
-
Becskei, A.1
Séraphin, B.2
Serrano, L.3
-
17
-
-
40849138085
-
Diverse two-dimensional input functions control bacterial sugar genes
-
Kaplan S, Bren A, Zaslaver A, Dekel E, Alon U (2008) Diverse two-dimensional input functions control bacterial sugar genes. Mol Cell 29: 786-792.
-
(2008)
Mol Cell
, vol.29
, pp. 786-792
-
-
Kaplan, S.1
Bren, A.2
Zaslaver, A.3
Dekel, E.4
Alon, U.5
-
18
-
-
0026003072
-
Control site location and transcriptional regulation in Escherichia coli
-
Collado-Vides J, Magasanik B, Gralla JD (1991) Control site location and transcriptional regulation in Escherichia coli. Microbiol Rev 55: 371-394.
-
(1991)
Microbiol Rev
, vol.55
, pp. 371-394
-
-
Collado-Vides, J.1
Magasanik, B.2
Gralla, J.D.3
-
19
-
-
0032524713
-
Quantitative parameters for amino acid-base interactions: Implications for prediction of protein-DNA binding sites
-
Mandel-Gutfreund Y, Margalit H (1998) Quantitative parameters for amino acid-base interactions: implications for prediction of protein-DNA binding sites. Nucl Acids Res 26(10): 2306-2312.
-
(1998)
Nucl Acids Res
, vol.26
, Issue.10
, pp. 2306-2312
-
-
Mandel-Gutfreund, Y.1
Margalit, H.2
-
20
-
-
0022429106
-
r control system of bacteriophage lambda. A physical-chemical model for gene regulation
-
r control system of bacteriophage lambda. A physical-chemical model for gene regulation. J Mol Biol 181: 211-230.
-
(1985)
J Mol Biol
, vol.181
, pp. 211-230
-
-
Shea, M.A.1
Ackers, G.K.2
-
21
-
-
0027230594
-
Compilation of E.coli mRNA promoter sequences
-
Lisser S, Margalit H (1993) Compilation of E.coli mRNA promoter sequences. Nucl Acids Res 21(7): 1507-1516.
-
(1993)
Nucl Acids Res
, vol.21
, Issue.7
, pp. 1507-1516
-
-
Lisser, S.1
Margalit, H.2
-
22
-
-
0023147228
-
Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
-
Berg OG, von Hippel PH (1987) Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J Mol Biol 193: 723-750.
-
(1987)
J Mol Biol
, vol.193
, pp. 723-750
-
-
Berg, O.G.1
von Hippel, P.H.2
-
23
-
-
0023894726
-
Selection of DNA binding sites by regulatory proteins ii. The binding specificity of cyclic AMP receptor protein to recognition sites
-
Berg OG, von Hippel PH (1988) Selection of DNA binding sites by regulatory proteins ii. The binding specificity of cyclic AMP receptor protein to recognition sites. J Mol Biol 200: 709-723.
-
(1988)
J Mol Biol
, vol.200
, pp. 709-723
-
-
Berg, O.G.1
von Hippel, P.H.2
-
24
-
-
0023774773
-
Selection of DNA binding sites by regulatory proteins. Functional specificity and pseudosite competition
-
Berg OG (1988) Selection of DNA binding sites by regulatory proteins. Functional specificity and pseudosite competition. J Biomol Struc & Dynam 6(2): 275-297.
-
(1988)
J Biomol Struc & Dynam
, vol.6
, Issue.2
, pp. 275-297
-
-
Berg, O.G.1
-
25
-
-
0030960672
-
Transcriptional activation by recruitment
-
Ptashne M, Gann A (1997) Transcriptional activation by recruitment. Nature 386: 569-577.
-
(1997)
Nature
, vol.386
, pp. 569-577
-
-
Ptashne, M.1
Gann, A.2
-
26
-
-
15744394192
-
Transcription regulation by the numbers 1: Models
-
Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, et al. (2005) Transcription regulation by the numbers 1: Models. Curr Opin Gen & Dev 15: 116-124.
-
(2005)
Curr Opin Gen & Dev
, vol.15
, pp. 116-124
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
-
27
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
Swain PS, Elowitz MB, Siggia ED (2002) Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc Natl Acad Sci U S A 99: 12795-800.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
29
-
-
0025117574
-
Evidence for multiple ompr-binding sites in the upstream activation sequence of the ompc promoter in escherichia coli: A single ompr-binding site is capable of activating the promoter
-
Maeda S, Mizuno T (1990) Evidence for multiple ompr-binding sites in the upstream activation sequence of the ompc promoter in escherichia coli: a single ompr-binding site is capable of activating the promoter. J Bacteriol 172: 501-3.
-
(1990)
J Bacteriol
, vol.172
, pp. 501-503
-
-
Maeda, S.1
Mizuno, T.2
-
30
-
-
62649129015
-
Synergy of repression and silencing gradients along the chromosome
-
Ratna P, Scherrer S, Fleischli C, Becskei A (2009) Synergy of repression and silencing gradients along the chromosome. J Mol Biol 387: 826-39.
-
(2009)
J Mol Biol
, vol.387
, pp. 826-839
-
-
Ratna, P.1
Scherrer, S.2
Fleischli, C.3
Becskei, A.4
-
31
-
-
33745658106
-
Computational models for neurogenic gene expression in the drosophila embryo
-
Jul 11
-
Zinzen RP, Senger K, Levine M, Papatsenko D (2006 Jul 11) Computational models for neurogenic gene expression in the drosophila embryo. Curr Biol 16: 1358-1365.
-
(2006)
Curr Biol
, vol.16
, pp. 1358-1365
-
-
Zinzen, R.P.1
Senger, K.2
Levine, M.3
Papatsenko, D.4
-
32
-
-
0034676456
-
Feedback control of intercellular signalling in development
-
Freeman M (2000) Feedback control of intercellular signalling in development. Nature 408: 313-9.
-
(2000)
Nature
, vol.408
, pp. 313-319
-
-
Freeman, M.1
-
33
-
-
25444489027
-
Phenotypic diversity, population growth, and information in fluctuating environments
-
Kussell E, Leibler S (2005) Phenotypic diversity, population growth, and information in fluctuating environments. Science 309: 2075-2078.
-
(2005)
Science
, vol.309
, pp. 2075-2078
-
-
Kussell, E.1
Leibler, S.2
-
34
-
-
50949119269
-
Regulatory control and the costs and benefits of biochemical noise
-
Tanase-Nicola S, ten Wolde PR (2008) Regulatory control and the costs and benefits of biochemical noise. PLoS Comput Biol 4: e1000125.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Tanase-Nicola, S.1
ten Wolde, P.R.2
|