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Volumn 52, Issue 4, 2012, Pages 263-270

Technique for strand-specific gene-expression analysis and monitoring of primer-independent cDNA synthesis in reverse transcription

Author keywords

Primer independent reverse transcription; Proportion; RT PCR

Indexed keywords

COMPLEMENTARY DNA; PRIMER DNA;

EID: 84859467162     PISSN: 07366205     EISSN: 19409818     Source Type: Journal    
DOI: 10.2144/0000113842     Document Type: Article
Times cited : (24)

References (26)
  • 1
    • 66549129231 scopus 로고    scopus 로고
    • Reliability of real-time reverse-transcription PCR in clinical diagnostics: Gold standard or substandard?
    • Murphy, J. and S.A. Bustin. 2009. Reliability of real-time reverse-transcription PCR in clinical diagnostics: gold standard or substandard? Expert Rev. Mol. Diagn. 9:187-197.
    • (2009) Expert Rev. Mol. Diagn , vol.9 , pp. 187-197
    • Murphy, J.1    Bustin, S.A.2
  • 2
    • 1542328972 scopus 로고    scopus 로고
    • Properties of the reverse transcription reaction in mRNA quantification
    • Stahlberg, A., J. Hakansson, X. Xian, H. Semb, and M. Kubista. 2004. Properties of the reverse transcription reaction in mRNA quantification. Clin. Chem. 50:509-515.
    • (2004) Clin. Chem , vol.50 , pp. 509-515
    • Stahlberg, A.1    Hakansson, J.2    Xian, X.3    Semb, H.4    Kubista, M.5
  • 3
    • 33847643776 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time RT-PCR
    • Nolan, T., R.E. Hands, and S.A. Bustin. 2006. Quantification of mRNA using real-time RT-PCR. Nat. Protocols 1:1559-1582.
    • (2006) Nat. Protocols , vol.1 , pp. 1559-1582
    • Nolan, T.1    Hands, R.E.2    Bustin, S.A.3
  • 5
    • 0142091698 scopus 로고    scopus 로고
    • Evidence for in vitro falsely-primed cDNAs that prevent specific detection of virus negative strand RNAs in dengue-infected cells: Improvement by tagged RT-PCR
    • Peyrefitte, C.N., B. Pastorino, M. Bessaud, H.J. Tolou, and P. Couissinier-Paris. 2003. Evidence for in vitro falsely-primed cDNAs that prevent specific detection of virus negative strand RNAs in dengue-infected cells: improvement by tagged RT-PCR. J. Virol. Methods 113:19-28.
    • (2003) J. Virol. Methods , vol.113 , pp. 19-28
    • Peyrefitte, C.N.1    Pastorino, B.2    Bessaud, M.3    Tolou, H.J.4    Couissinier-Paris, P.5
  • 6
    • 53049094782 scopus 로고    scopus 로고
    • Development of a Taqman RT-PCR assay for the detection and quantification of negatively stranded RNA of human entero-viruses: Evidence for false-priming and improvement by tagged RT-PCR
    • Bessaud, M., A. Autret, S. Jegouic, J. Balanant, M.L. Joffret, and F. Delpeyroux. 2008. Development of a Taqman RT-PCR assay for the detection and quantification of negatively stranded RNA of human entero-viruses: evidence for false-priming and improvement by tagged RT-PCR. J. Virol. Methods 153:182-189.
    • (2008) J. Virol. Methods , vol.153 , pp. 182-189
    • Bessaud, M.1    Autret, A.2    Jegouic, S.3    Balanant, J.4    Joffret, M.L.5    Delpeyroux, F.6
  • 9
    • 24944562066 scopus 로고    scopus 로고
    • Sense and antisense transcripts of the apolipoprotein E gene in normal and ApoE knockout mice, their expression after spinal cord injury and corre-sponding human transcripts
    • Seitz, A., D. Gourevitch, X.M. Zhang, L. Clark, P. Chen, M. Kragol, N. Levenkova, J. Rux, et al. 2005. Sense and antisense transcripts of the apolipoprotein E gene in normal and ApoE knockout mice, their expression after spinal cord injury and corre-sponding human transcripts. Hum. Mol. Genet. 14:2661-2670.
    • (2005) Hum. Mol. Genet , vol.14 , pp. 2661-2670
    • Seitz, A.1    Gourevitch, D.2    Zhang, X.M.3    Clark, L.4    Chen, P.5    Kragol, M.6    Levenkova, N.7    Rux, J.8
  • 10
    • 20444490380 scopus 로고    scopus 로고
    • Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas
    • Yan, M.D., C.C. Hong, G.M. Lai, A.L. Cheng, Y.W. Lin, and S.E. Chuang. 2005. Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas. Hum. Mol. Genet. 14:1465-1474.
    • (2005) Hum. Mol. Genet , vol.14 , pp. 1465-1474
    • Yan, M.D.1    Hong, C.C.2    Lai, G.M.3    Cheng, A.L.4    Lin, Y.W.5    Chuang, S.E.6
  • 11
    • 36148972085 scopus 로고    scopus 로고
    • Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D
    • Perocchi, F., Z. Xu, S. Clauder-Münster, and L.M. Steinmetz. 2007. Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D. Nucleic Acids Res. 35:e128.
    • (2007) Nucleic Acids Res , vol.35
    • Perocchi, F.1    Xu, Z.2    Clauder-Münster, S.3    Steinmetz, L.M.4
  • 12
    • 80052094817 scopus 로고    scopus 로고
    • Commercial reverse transcriptase as source of false-positive strand-specific RNA detection in human cells
    • Moison, C., P.B. Arimondo, and A.L. Guieysse-Peugeot. 2011. Commercial reverse transcriptase as source of false-positive strand-specific RNA detection in human cells. Biochimie 93:1731-1737.
    • (2011) Biochimie , vol.93 , pp. 1731-1737
    • Moison, C.1    Arimondo, P.B.2    Guieysse, A.L.3
  • 13
    • 69949159297 scopus 로고    scopus 로고
    • Pervasive transcription constitutes a new level of eukaryotic genome regulation
    • Berretta, J. and A. Morillon. 2009. Pervasive transcription constitutes a new level of eukaryotic genome regulation. EMBO Rep. 10:973-982.
    • (2009) EMBO Rep , vol.10 , pp. 973-982
    • Berretta, J.1    Morillon, A.2
  • 14
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core, L.J., J.J. Waterfall, and J.T. Lis. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322:1845-1848.
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 15
    • 60549114880 scopus 로고    scopus 로고
    • Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
    • Neil, H., C. Malabat, Y. d'Aubenton-Carafa, Z. Xu, L.M. Steinmetz, and A. Jacquier. 2009. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 457:1038-1042.
    • (2009) Nature , vol.457 , pp. 1038-1042
    • Neil, H.1    Malabat, C.2    D'aubenton-Carafa, Y.3    Xu, Z.4    Steinmetz, L.M.5    Jacquier, A.6
  • 17
    • 0035180129 scopus 로고    scopus 로고
    • Background activity of reverse transcriptases
    • Timofeeva, A.V. and N.A. Skrypina. 2001. Background activity of reverse transcriptases. Biotechniques 30:22-24, 26, 28.
    • (2001) Biotechniques , vol.30
    • Timofeeva, A.V.1    Skrypina, N.A.2
  • 18
    • 0028139547 scopus 로고
    • Specific detection of positive and negative stranded hepatitis C viral RNA using chemical RNA modification
    • Gunji, T., N. Kato, M. Hijikata, K. Hayashi, S. Saitoh, and K. Shimotohno. 1994. Specific detection of positive and negative stranded hepatitis C viral RNA using chemical RNA modification. Arch. Virol. 134:293-302.
    • (1994) Arch. Virol , vol.134 , pp. 293-302
    • Gunji, T.1    Kato, N.2    Hijikata, M.3    Hayashi, K.4    Saitoh, S.5    Shimotohno, K.6
  • 19
    • 34548400808 scopus 로고    scopus 로고
    • Sense or antisense? False priming reverse transcription controls are required for determining sequence orientation by reverse transcription-PCR
    • Beiter, T., E. Reich, C. Weigert, A.M. Niess, and P. Simon. 2007. Sense or antisense? False priming reverse transcription controls are required for determining sequence orientation by reverse transcription-PCR. Anal. Biochem. 369:258-261.
    • (2007) Anal. Biochem , vol.369 , pp. 258-261
    • Beiter, T.1    Reich, E.2    Weigert, C.3    Niess, A.M.4    Simon, P.5
  • 21
    • 34249326541 scopus 로고    scopus 로고
    • Potential pitfalls in the accuracy of analysis of natural sense-antisense RNA pairs by reverse transcription-PCR
    • Haddad, F., A.X. Qin, J.M. Giger, H. Guo, and K.M. Baldwin. 2007. Potential pitfalls in the accuracy of analysis of natural sense-antisense RNA pairs by reverse transcription-PCR. BMC Biotechnol. 7:21.
    • (2007) BMC Biotechnol , vol.7 , pp. 21
    • Haddad, F.1    Qin, A.X.2    Giger, J.M.3    Guo, H.4    Baldwin, K.M.5
  • 24
    • 0033427641 scopus 로고    scopus 로고
    • High temper-ature cDNA synthesis by AMV reverse transcriptase improves the specificity of PCR
    • Fuchs, B., K. Zhang, M.G. Rock, M.E. Bolander, and G. Sarkar. 1999. High temper-ature cDNA synthesis by AMV reverse transcriptase improves the specificity of PCR. Mol. Biotechnol. 12:237-240.
    • (1999) Mol. Biotechnol , vol.12 , pp. 237-240
    • Fuchs, B.1    Zhang, K.2    Rock, M.G.3    Bolander, M.E.4    Sarkar, G.5
  • 25
    • 0031758094 scopus 로고    scopus 로고
    • Search for hepatitis C virus extrahepatic replication sites in patients with acquired immunode-ficiency syndrome: Specific detection of negative-strand viral RNA in various tissues
    • Laskus, T., M. Radkowski, L.F. Wang, H. Vargas, and J. Rakela. 1998. Search for hepatitis C virus extrahepatic replication sites in patients with acquired immunode-ficiency syndrome: specific detection of negative-strand viral RNA in various tissues. Hepatology 28:1398-1401.
    • (1998) Hepatology , vol.28 , pp. 1398-1401
    • Laskus, T.1    Radkowski, M.2    Wang, L.F.3    Vargas, H.4    Rakela, J.5
  • 26
    • 0035022639 scopus 로고    scopus 로고
    • Development of a strand-specific RT-PCR based assay to detect the replicative form of hepatitis C virus RNA
    • Craggs, J.K., J.K. Ball, B.J. Thomson, W.L. Irving, and A.M. Grabowska. 2001. Development of a strand-specific RT-PCR based assay to detect the replicative form of hepatitis C virus RNA. J. Virol. Methods 94:111-120.
    • (2001) J. Virol. Methods , vol.94 , pp. 111-120
    • Craggs, J.K.1    Ball, J.K.2    Thomson, B.J.3    Irving, W.L.4    Grabowska, A.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.