메뉴 건너뛰기




Volumn 63, Issue 2, 2012, Pages 185-194

Profiling the yeast communities of wine fermentations using terminal restriction fragment length polymorphism analysis

Author keywords

Community profiling; Culture independent methods; TRFLP

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 84859161442     PISSN: 00029254     EISSN: None     Source Type: Journal    
DOI: 10.5344/ajev.2011.11077     Document Type: Article
Times cited : (24)

References (26)
  • 1
    • 33645450631 scopus 로고    scopus 로고
    • Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes
    • Abdo, Z., U.M.E. Schuette, S.J. Bent, C.J. Williams, L.J. Forney, and P. Joyce. 2006. Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Env. Microbiol. 8(5):929-938.
    • (2006) Env. Microbiol , vol.8 , Issue.5 , pp. 929-938
    • Abdo, Z.1    Schuette, U.M.E.2    Bent, S.J.3    Williams, C.J.4    Forney, L.J.5    Joyce, P.6
  • 3
    • 3543138422 scopus 로고    scopus 로고
    • Diversity and ecology of soil fungal communities: Increased understanding through the application of molecular techniques
    • Anderson, I.C., and J.W.G. Cairney. 2004. Diversity and ecology of soil fungal communities: Increased understanding through the application of molecular techniques. Env. Microbiol. 6(8):769-779.
    • (2004) Env. Microbiol , vol.6 , Issue.8 , pp. 769-779
    • Anderson, I.C.1    Cairney, J.W.G.2
  • 4
    • 0037313539 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities
    • Blackwood, C.B., T. Marsh, S.H. Kim, and E.A. Paul. 2003. Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities. Appl. Environ. Microbiol. 69:926-932.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 926-932
    • Blackwood, C.B.1    Marsh, T.2    Kim, S.H.3    Paul, E.A.4
  • 6
    • 0034256049 scopus 로고    scopus 로고
    • Direct profiling of yeast dynamics in wine fermentations
    • Cocolin, L., L.F. Bisson, and D.A. Mills. 2000. Direct profiling of yeast dynamics in wine fermentations. FEMS Microbiol. Lett. 189:81-87.
    • (2000) FEMS Microbiol. Lett , vol.189 , pp. 81-87
    • Cocolin, L.1    Bisson, L.F.2    Mills, D.A.3
  • 7
    • 0034922099 scopus 로고    scopus 로고
    • Direct identification of the indigenous yeasts in commercial wine fermentations
    • Cocolin, L., A. Heisey, and D.A. Mills. 2001. Direct identification of the indigenous yeasts in commercial wine fermentations. Am. J. Enol. Vitic. 52:49-53.
    • (2001) Am. J. Enol. Vitic , vol.52 , pp. 49-53
    • Cocolin, L.1    Heisey, A.2    Mills, D.A.3
  • 8
    • 0037388225 scopus 로고    scopus 로고
    • Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity
    • Crosby, L.D., and C.S. Criddle. 2003. Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity. Biotechniques 34:790-802.
    • (2003) Biotechniques , vol.34 , pp. 790-802
    • Crosby, L.D.1    Criddle, C.S.2
  • 9
    • 77949855797 scopus 로고    scopus 로고
    • Phylogenetic similarity and structure of Agaricomycotina communities across a forested landscape
    • Edwards, I.P., and D.R. Zak. 2010. Phylogenetic similarity and structure of Agaricomycotina communities across a forested landscape. Mol. Ecol. 19:1469-1482.
    • (2010) Mol. Ecol , vol.19 , pp. 1469-1482
    • Edwards, I.P.1    Zak, D.R.2
  • 10
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts
    • Gardes, M., and T.D. Bruns. 1993. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol. Ecol. 3:113-118.
    • (1993) Mol. Ecol , vol.3 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 11
    • 84985108016 scopus 로고
    • Evaluation of selective media for enumeration of yeasts during wine fermentation
    • Heard, G.M., and G.H. Fleet. 1986. Evaluation of selective media for enumeration of yeasts during wine fermentation. J. Appl. Bacteriol. 60:477-481.
    • (1986) J. Appl. Bacteriol , vol.60 , pp. 477-481
    • Heard, G.M.1    Fleet, G.H.2
  • 12
    • 33751010778 scopus 로고    scopus 로고
    • Real-time quantitative PCR (QPCR) and reversetranscription-QPCR for detection and enumeration of total yeasts in wine
    • Hierro, N., B. Esteve-Zarzoso, A. Gonzalez, A. Mas, and J.M. Guillamon. 2006. Real-time quantitative PCR (QPCR) and reversetranscription-QPCR for detection and enumeration of total yeasts in wine. Appl. Environ. Microbiol. 72:7148-7155.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 7148-7155
    • Hierro, N.1    Esteve-Zarzoso, B.2    Gonzalez, A.3    Mas, A.4    Guillamon, J.M.5
  • 13
    • 0038054120 scopus 로고    scopus 로고
    • Limited resolution of 16S rDNA DGGE caused by melting properties and closely related DNA sequences
    • Kisand, V., and J. Wikner. 2003. Limited resolution of 16S rDNA DGGE caused by melting properties and closely related DNA sequences. J. Microbiol. Meth. 54:183-191.
    • (2003) J. Microbiol. Meth , vol.54 , pp. 183-191
    • Kisand, V.1    Wikner, J.2
  • 14
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S RNA
    • Liu, W., T.L. Marsh, H. Cheng, and L.J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S RNA. Appl. Environ. Microbiol. 63:4516-4522.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 4516-4522
    • Liu, W.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 15
    • 0037225001 scopus 로고    scopus 로고
    • Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts
    • Lueders, T., and M.W. Friedrich. 2003. Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl. Environ. Microbiol. 69:320-326.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 320-326
    • Lueders, T.1    Friedrich, M.W.2
  • 16
    • 49849101295 scopus 로고    scopus 로고
    • Microbial DNA profiling by multiplex terminal restriction fragment length polymorphism for forensic comparison of soil and the influence of sample condition
    • Macdonald, L.M., B.K. Singh, N. Thomas, M.J. Brewer, C.D. Campbell, and L.A. Dawson. 2008. Microbial DNA profiling by multiplex terminal restriction fragment length polymorphism for forensic comparison of soil and the influence of sample condition. J. Appl. Microbiol. 105:813-821.
    • (2008) J. Appl. Microbiol , vol.105 , pp. 813-821
    • Macdonald, L.M.1    Singh, B.K.2    Thomas, N.3    Brewer, M.J.4    Campbell, C.D.5    Dawson, L.A.6
  • 17
    • 0034058404 scopus 로고    scopus 로고
    • The viable but non-culturable state of wine micro-organisms during storage
    • Millet, V., and A. Lonvaud-Funel. 2000. The viable but non-culturable state of wine micro-organisms during storage. Lett. Appl. Microbiol. 30:136-141.
    • (2000) Lett. Appl. Microbiol , vol.30 , pp. 136-141
    • Millet, V.1    Lonvaud-Funel, A.2
  • 18
    • 0036795785 scopus 로고    scopus 로고
    • Yeast diversity and persistence in botrytis-affected wine fermentations
    • Mills, D.A., A.J. Eric, and L. Cocolin. 2002. Yeast diversity and persistence in botrytis-affected wine fermentations. Appl. Environ. Microbiol. 68:4884-4893.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 4884-4893
    • Mills, D.A.1    Eric, A.J.2    Cocolin, L.3
  • 19
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNA in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nubel, U., B. Engelen, A. Felske, J. Snaidr, A. Wieshuber, R.I. Amann, W. Ludwig, and H. Backhaus. 1996. Sequence heterogeneities of genes encoding 16S rRNA in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178:5636-5643.
    • (1996) J. Bacteriol , vol.178 , pp. 5636-5643
    • Nubel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 20
    • 0034547801 scopus 로고    scopus 로고
    • An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
    • Osborn, A.M., E.R.B. Moore, and K.N. Timmis. 2000. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50.
    • (2000) Environ. Microbiol , vol.2 , pp. 39-50
    • Osborn, A.M.1    Moore, E.R.B.2    Timmis, K.N.3
  • 21
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • Polz, M.F., and C.M. Cavanaugh. 1998. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64:3724-3730.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 22
    • 50249150207 scopus 로고    scopus 로고
    • Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities
    • Schutte, U.M., Z. Abdo, S.J. Bent, C. Shya, C.J. Williams, J.D. Pierson, and L.J. Forney. 2008. Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities. Appl. Microbiol. Biotechnol. 80:365-380.
    • (2008) Appl. Microbiol. Biotechnol , vol.80 , pp. 365-380
    • Schutte, U.M.1    Abdo, Z.2    Bent, S.J.3    Shya, C.4    Williams, C.J.5    Pierson, J.D.6    Forney, L.J.7
  • 23
    • 0034857157 scopus 로고    scopus 로고
    • A single band does not always represent single bacterial strains in denaturing gradient gel electrophoresis analysis
    • Sekiguchi, H., N. Tomioka, T. Nakahara, and H. Uchiyama. 2001. A single band does not always represent single bacterial strains in denaturing gradient gel electrophoresis analysis. Biotechnol. Lett. 23:1205-1208.
    • (2001) Biotechnol. Lett , vol.23 , pp. 1205-1208
    • Sekiguchi, H.1    Tomioka, N.2    Nakahara, T.3    Uchiyama, H.4
  • 24
    • 0036099682 scopus 로고    scopus 로고
    • Adaption of a fragment analysis technique to an automated high-throughput multicapillary electrophoresis device for the precise qualitative and quantitative characterization of microbial communities
    • Trotha, R., U. Reich, F.L. Thies, D. Sperling, W. Konig, and B. Konig. 2002. Adaption of a fragment analysis technique to an automated high-throughput multicapillary electrophoresis device for the precise qualitative and quantitative characterization of microbial communities. Electrophoresis 23:1070-1079.
    • (2002) Electrophoresis , vol.23 , pp. 1070-1079
    • Trotha, R.1    Reich, U.2    Thies, F.L.3    Sperling, D.4    Konig, W.5    Konig, B.6
  • 25
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • White, T., T. Burns, S. Lee, and J. Taylor, Academic Press, San Diego
    • White, T., T. Burns, S. Lee, and J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols. White, T., T. Burns, S. Lee, and J. Taylor. (eds.), pp. 315-322. Academic Press, San Diego.
    • (1990) PCR Protocols , pp. 315-322
    • White, T.1    Burns, T.2    Lee, S.3    Taylor, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.