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Volumn 7, Issue 3, 2012, Pages

Integrated analyses of microRNAs demonstrate their widespread influence on gene expression in high-grade serous ovarian carcinoma

(19)  Creighton, Chad J a   Hernandez Herrera, Anadulce g   Jacobsen, Anders b   Levine, Douglas A b   Mankoo, Parminder b   Schultz, Nikolaus b   Du, Ying c   Zhang, Yiqun a   Larsson, Erik b   Sheridan, Robert b   Xiao, Weimin g   Spellman, Paul T e   Getz, Gad f   Wheeler, David A a   Perou, Charles M c   Gibbs, Richard A a   Sander, Chris b   Hayes, D Neil c,d   Gunaratne, Preethi H a,g  


Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MIRN29 MICRORNA, HUMAN;

EID: 84859090208     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0034546     Document Type: Article
Times cited : (111)

References (37)
  • 1
    • 77955644289 scopus 로고    scopus 로고
    • Mammalian microRNAs predominantly act to decrease target mRNA levels
    • Guo H, Ingolia N, Weissman J, Bartel D, (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466: 835-840.
    • (2010) Nature , vol.466 , pp. 835-840
    • Guo, H.1    Ingolia, N.2    Weissman, J.3    Bartel, D.4
  • 2
    • 73349125465 scopus 로고    scopus 로고
    • MicroRNAs in cancer: small molecules with a huge impact
    • Iorio M, Croce C, (2009) MicroRNAs in cancer: small molecules with a huge impact. J Clin Oncol 27: 5848-5856.
    • (2009) J Clin Oncol , vol.27 , pp. 5848-5856
    • Iorio, M.1    Croce, C.2
  • 3
    • 38148999355 scopus 로고    scopus 로고
    • Let me count the ways: mechanisms of gene regulation by miRNAs and siRNAs
    • Wu L, Belasco J, (2008) Let me count the ways: mechanisms of gene regulation by miRNAs and siRNAs. Mol Cell 29: 1-7.
    • (2008) Mol Cell , vol.29 , pp. 1-7
    • Wu, L.1    Belasco, J.2
  • 5
    • 33745248430 scopus 로고    scopus 로고
    • microRNA target predictions in animals
    • Rajewsky N, (2006) microRNA target predictions in animals. Nat Genet 38 (Suppl).
    • (2006) Nat Genet , vol.38 , Issue.SUPPL.
    • Rajewsky, N.1
  • 7
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman R, Farh K, Burge C, Bartel DP, (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19: 92-105.
    • (2009) Genome Res , vol.19 , pp. 92-105
    • Friedman, R.1    Farh, K.2    Burge, C.3    Bartel, D.P.4
  • 8
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • The_Cancer_Genome_Atlas_Research_Network
    • The_Cancer_Genome_Atlas_Research_Network (2011) Integrated genomic analyses of ovarian carcinoma. Nature 474: 609-615.
    • (2011) Nature , vol.474 , pp. 609-615
  • 10
    • 77950202790 scopus 로고    scopus 로고
    • Molecular profiling uncovers a p53-associated role for microRNA-31 in inhibiting the proliferation of serous ovarian carcinomas and other cancers
    • Creighton C, Fountain M, Yu Z, Nagaraja A, Zhu H, et al. (2010) Molecular profiling uncovers a p53-associated role for microRNA-31 in inhibiting the proliferation of serous ovarian carcinomas and other cancers. Cancer Res 70: 1906-1915.
    • (2010) Cancer Res , vol.70 , pp. 1906-1915
    • Creighton, C.1    Fountain, M.2    Yu, Z.3    Nagaraja, A.4    Zhu, H.5
  • 11
    • 58149348629 scopus 로고    scopus 로고
    • Genetic analysis of cancer-implicated MicroRNA in ovarian cancer
    • Bearfoot J, Choong D, Gorringe K, Campbell I, (2008) Genetic analysis of cancer-implicated MicroRNA in ovarian cancer. Clin Cancer Res 14: 7246-7250.
    • (2008) Clin Cancer Res , vol.14 , pp. 7246-7250
    • Bearfoot, J.1    Choong, D.2    Gorringe, K.3    Campbell, I.4
  • 12
    • 50849137458 scopus 로고    scopus 로고
    • MicroRNA expression profiles in serous ovarian carcinoma
    • Nam E, Yoon H, Kim S, Kim H, Kim Y, et al. (2008) MicroRNA expression profiles in serous ovarian carcinoma. Clin Cancer Res 14: 2690-2695.
    • (2008) Clin Cancer Res , vol.14 , pp. 2690-2695
    • Nam, E.1    Yoon, H.2    Kim, S.3    Kim, H.4    Kim, Y.5
  • 13
    • 44349124725 scopus 로고    scopus 로고
    • Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer
    • Zhang L, Volinia S, Bonome T, Calin G, Greshock J, et al. (2008) Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer. Proc Natl Acad Sci U S A 105: 7004-7009.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 7004-7009
    • Zhang, L.1    Volinia, S.2    Bonome, T.3    Calin, G.4    Greshock, J.5
  • 14
    • 65349147075 scopus 로고    scopus 로고
    • Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries
    • Wyman S, Parkin R, Mitchell P, Fritz B, O'Briant K, et al. (2009) Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries. PLoS ONE 4: e5311.
    • (2009) PLoS ONE , vol.4
    • Wyman, S.1    Parkin, R.2    Mitchell, P.3    Fritz, B.4    O'Briant, K.5
  • 15
    • 13944260434 scopus 로고    scopus 로고
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    • Baskerville S, Bartel D, (2005) Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11: 241-247.
    • (2005) RNA , vol.11 , pp. 241-247
    • Baskerville, S.1    Bartel, D.2
  • 16
    • 13844250828 scopus 로고    scopus 로고
    • Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
    • Pollack J, Sørlie T, Perou C, Rees C, Jeffrey S, et al. (2002) Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc Natl Acad Sci U S A 99: 12963-12968.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 12963-12968
    • Pollack, J.1    Sørlie, T.2    Perou, C.3    Rees, C.4    Jeffrey, S.5
  • 17
    • 66349119276 scopus 로고    scopus 로고
    • Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data
    • Wang Y, Li K, (2009) Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data. BMC Genomics 10: 218.
    • (2009) BMC Genomics , vol.10 , pp. 218
    • Wang, Y.1    Li, K.2
  • 18
    • 34347376692 scopus 로고    scopus 로고
    • Characterization of microRNA expression profiles in normal human tissues
    • Liang Y, Ridzon D, Wong L, Chen C, (2007) Characterization of microRNA expression profiles in normal human tissues. BMC Genomics 8: 166.
    • (2007) BMC Genomics , vol.8 , pp. 166
    • Liang, Y.1    Ridzon, D.2    Wong, L.3    Chen, C.4
  • 19
    • 79957516191 scopus 로고    scopus 로고
    • A microRNA survival signature (MiSS) for advanced ovarian cancer
    • Shih K, Qin L, Tanner E, Zhou Q, Bisogna M, et al. (2011) A microRNA survival signature (MiSS) for advanced ovarian cancer. Gynecol Oncol 121: 444-450.
    • (2011) Gynecol Oncol , vol.121 , pp. 444-450
    • Shih, K.1    Qin, L.2    Tanner, E.3    Zhou, Q.4    Bisogna, M.5
  • 20
    • 58049213696 scopus 로고    scopus 로고
    • Dicer, Drosha, and outcomes in patients with ovarian cancer
    • Merritt W, Lin Y, Han L, Kamat A, Spannuth W, et al. (2008) Dicer, Drosha, and outcomes in patients with ovarian cancer. N Engl J Med 359: 2641-2650.
    • (2008) N Engl J Med , vol.359 , pp. 2641-2650
    • Merritt, W.1    Lin, Y.2    Han, L.3    Kamat, A.4    Spannuth, W.5
  • 21
    • 80455125871 scopus 로고    scopus 로고
    • Time to recurrence and survival in serous ovarian tumors predicted from integrated genomic profiles
    • Mankoo P, Shen R, Schultz N, Levine D, Sander C, (2011) Time to recurrence and survival in serous ovarian tumors predicted from integrated genomic profiles. PLoS One 6: e24709.
    • (2011) PLoS One , vol.6
    • Mankoo, P.1    Shen, R.2    Schultz, N.3    Levine, D.4    Sander, C.5
  • 22
    • 84859066333 scopus 로고    scopus 로고
    • Altered expression of miR-152 and miR-148a in ovarian cancer is related to cell proliferation
    • E-pub Oct 3
    • Zhou X, Zhao F, Wang Z, Song Y, Chang H, et al. (2011) Altered expression of miR-152 and miR-148a in ovarian cancer is related to cell proliferation. Oncol Rep E-pub Oct 3.
    • (2011) Oncol Rep
    • Zhou, X.1    Zhao, F.2    Wang, Z.3    Song, Y.4    Chang, H.5
  • 23
    • 79955578079 scopus 로고    scopus 로고
    • MicroRNA-26b is underexpressed in human breast cancer and induces cell apoptosis by targeting SLC7A11
    • Liu X, Li X, Zhang B, Liang Y, Zhou C, et al. (2011) MicroRNA-26b is underexpressed in human breast cancer and induces cell apoptosis by targeting SLC7A11. FEBS Lett 585: 1363-1367.
    • (2011) FEBS Lett , vol.585 , pp. 1363-1367
    • Liu, X.1    Li, X.2    Zhang, B.3    Liang, Y.4    Zhou, C.5
  • 24
    • 54449097149 scopus 로고    scopus 로고
    • A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence
    • Forman J, Legesse-Miller A, Coller H, (2008) A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence. Proc Natl Acad Sci U S A 105: 14879-14884.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 14879-14884
    • Forman, J.1    Legesse-Miller, A.2    Coller, H.3
  • 25
    • 54549108798 scopus 로고    scopus 로고
    • MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
    • Tay Y, Zhang J, Thomson A, Lim B, Rigoutsos I, (2008) MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature 455: 1124-1128.
    • (2008) Nature , vol.455 , pp. 1124-1128
    • Tay, Y.1    Zhang, J.2    Thomson, A.3    Lim, B.4    Rigoutsos, I.5
  • 26
    • 67650087599 scopus 로고    scopus 로고
    • New class of microRNA targets containing simultaneous 5′-UTR and 3′-UTR interaction sites
    • Lee I, Ajay S, Yook J, Kim H, Hong S, et al. (2009) New class of microRNA targets containing simultaneous 5′-UTR and 3′-UTR interaction sites. Genome Res 19: 1175-1183.
    • (2009) Genome Res , vol.19 , pp. 1175-1183
    • Lee, I.1    Ajay, S.2    Yook, J.3    Kim, H.4    Hong, S.5
  • 27
    • 34547441263 scopus 로고    scopus 로고
    • Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5′ UTR as in the 3′ UTR
    • Lytle J, Yario T, Steitz J, (2007) Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5′ UTR as in the 3′ UTR. Proc Natl Acad Sci U S A 104: 9667-9672.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 9667-9672
    • Lytle, J.1    Yario, T.2    Steitz, J.3
  • 28
    • 35649020283 scopus 로고    scopus 로고
    • MicroRNA-29 family reverts aberrant methylation in lung cancer by targeting DNA methyltransferases 3A and 3B
    • Fabbri M, Garzon R, Cimmino A, Liu Z, Zanesi N, et al. (2007) MicroRNA-29 family reverts aberrant methylation in lung cancer by targeting DNA methyltransferases 3A and 3B. Proc Natl Acad Sci U S A 104: 15805-15810.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 15805-15810
    • Fabbri, M.1    Garzon, R.2    Cimmino, A.3    Liu, Z.4    Zanesi, N.5
  • 29
    • 67650588646 scopus 로고    scopus 로고
    • MicroRNA-29b induces global DNA hypomethylation and tumor suppressor gene reexpression in acute myeloid leukemia by targeting directly DNMT3A and 3B and indirectly DNMT1
    • Garzon R, Liu S, Fabbri M, Liu Z, Heaphy C, et al. (2009) MicroRNA-29b induces global DNA hypomethylation and tumor suppressor gene reexpression in acute myeloid leukemia by targeting directly DNMT3A and 3B and indirectly DNMT1. Blood 113: 6411-6418.
    • (2009) Blood , vol.113 , pp. 6411-6418
    • Garzon, R.1    Liu, S.2    Fabbri, M.3    Liu, Z.4    Heaphy, C.5
  • 31
    • 73649123907 scopus 로고    scopus 로고
    • Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
    • Verhaak R, Hoadley K, Purdom E, Wang V, Qi Y, et al. (2010) Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell 17: 98-110.
    • (2010) Cancer Cell , vol.17 , pp. 98-110
    • Verhaak, R.1    Hoadley, K.2    Purdom, E.3    Wang, V.4    Qi, Y.5
  • 32
    • 84859069347 scopus 로고    scopus 로고
    • TCGA Data Portal website
    • Available:. Accessed 2010 Nov
    • TCGA Data Portal website. Available: http://tcga-data.nci.nih.gov/tcga/. Accessed 2010 Nov.
  • 33
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview-extensible visualization of microarray data
    • Saldanha AJ, (2004) Java Treeview-extensible visualization of microarray data. Bioinformatics 20: 3246-3248.
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 35
    • 55649091427 scopus 로고    scopus 로고
    • A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions
    • Creighton C, Nagaraja A, Hanash S, Matzuk M, Gunaratne P, (2008) A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions. RNA 14: 2290-2296.
    • (2008) RNA , vol.14 , pp. 2290-2296
    • Creighton, C.1    Nagaraja, A.2    Hanash, S.3    Matzuk, M.4    Gunaratne, P.5
  • 36
    • 84859035045 scopus 로고    scopus 로고
    • cBio Cancer Genomics Portal website
    • Available:. Accessed 2011 Nov
    • cBio Cancer Genomics Portal website. Available: http://www.cbioportal.org/. Accessed 2011 Nov.
  • 37
    • 77955167841 scopus 로고    scopus 로고
    • Signatures of RNA binding proteins globally coupled to effective microRNA target sites
    • Jacobsen A, Wen J, Marks D, Krogh A, (2010) Signatures of RNA binding proteins globally coupled to effective microRNA target sites. Genome Res 20: 1010-1019.
    • (2010) Genome Res , vol.20 , pp. 1010-1019
    • Jacobsen, A.1    Wen, J.2    Marks, D.3    Krogh, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.