-
1
-
-
28044471565
-
MicroRNA functions in animal development and human disease
-
Alvarez-Garcia, I. and Miska, E. 2005. MicroRNA functions in animal development and human disease. Development 132: 4653-4662.
-
(2005)
Development
, vol.132
, pp. 4653-4662
-
-
Alvarez-Garcia, I.1
Miska, E.2
-
2
-
-
38549124383
-
The microRNA.org resource: Targets and expression
-
Betel, D., Wilson, M., Gabow, A., Marks, D., and Sander, C. 2008. The microRNA.org resource: Targets and expression. Nucleic Acids Res. 36: D149-D153.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Betel, D.1
Wilson, M.2
Gabow, A.3
Marks, D.4
Sander, C.5
-
3
-
-
41549120212
-
Alterations in micro-ribonucleic acid expression profiles reveal a novel pathway for estrogen regulation
-
Cohen, A., Shmoish, M., Levi, L., Cheruti, U., Levavi-Sivan, B., and Lubzens, E. 2008. Alterations in micro-ribonucleic acid expression profiles reveal a novel pathway for estrogen regulation. Endocrinology 149: 1687-1696.
-
(2008)
Endocrinology
, vol.149
, pp. 1687-1696
-
-
Cohen, A.1
Shmoish, M.2
Levi, L.3
Cheruti, U.4
Levavi-Sivan, B.5
Lubzens, E.6
-
4
-
-
46349084468
-
Multiple oncogenic pathway signatures show coordinate expression patterns in human prostate tumors
-
doi: 10.1371/journal.pone.0001816
-
Creighton, C. 2008. Multiple oncogenic pathway signatures show coordinate expression patterns in human prostate tumors. PLoS ONE 3: e1816. doi: 10.1371/journal.pone.0001816.
-
(2008)
PLoS ONE
, vol.3
-
-
Creighton, C.1
-
5
-
-
0038825777
-
Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice
-
doi: 10.1186/gb-2003-4-7-r46
-
Creighton, C., Kuick, R., Misek, D., Rickman, D., Brichory, F., Rouillard, J.-M., Omenn, G., and Hanash, S. 2003. Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice. Genome Biol. 4: R46. doi: 10.1186/gb-2003-4-7-r46.
-
(2003)
Genome Biol
, vol.4
-
-
Creighton, C.1
Kuick, R.2
Misek, D.3
Rickman, D.4
Brichory, F.5
Rouillard, J.-M.6
Omenn, G.7
Hanash, S.8
-
6
-
-
33745014556
-
Genes regulated by estrogen in breast tumor cells in vitro are similarly regulated in vivo in tumor xenografts and human breast tumors
-
doi: 10.1186/gb-2006-7-4-r28
-
Creighton, C.J., Cordero, K.E., Larios, J.M., Miller, R.S., Johnson, M.D., Chinnaiyan, A.M., Lippman, M.E., and Rae, J.M. 2006. Genes regulated by estrogen in breast tumor cells in vitro are similarly regulated in vivo in tumor xenografts and human breast tumors. Genome Biol. 7: R28. doi: 10.1186/gb-2006-7-4-r28.
-
(2006)
Genome Biol
, vol.7
-
-
Creighton, C.J.1
Cordero, K.E.2
Larios, J.M.3
Miller, R.S.4
Johnson, M.D.5
Chinnaiyan, A.M.6
Lippman, M.E.7
Rae, J.M.8
-
7
-
-
0037263812
-
MAPPFinder: Using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
-
doi: 10.1186/gb-2003-4-1-r7
-
Doniger, S., Salomonis, N., Dahlquist, K., Vranizan, K., Lawlor, S., and Conklin, B. 2003. MAPPFinder: Using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol. 4: R7. doi: 10.1186/gb-2003-4-1-r7.
-
(2003)
Genome Biol
, vol.4
-
-
Doniger, S.1
Salomonis, N.2
Dahlquist, K.3
Vranizan, K.4
Lawlor, S.5
Conklin, B.6
-
8
-
-
28044455435
-
microPrimer: The biogenesis and function of microRNA
-
Du, T. and Zamore, P. 2005. microPrimer: The biogenesis and function of microRNA. Development 132: 4645-4652.
-
(2005)
Development
, vol.132
, pp. 4645-4652
-
-
Du, T.1
Zamore, P.2
-
9
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
Gene_Ontology_Consortium
-
Gene_Ontology_Consortium. 2004. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32: D258-D261.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
-
10
-
-
14044251458
-
Human MicroRNA targets
-
doi: 10.1371/journal.pbio.0020363
-
John, B., Enright, A., Aravin, A., Tuschl, T., Sander, C., and Marks, D. 2004. Human MicroRNA targets. PLoS Biol. 2: e363. doi: 10.1371/journal.pbio.0020363.
-
(2004)
PLoS Biol
, vol.2
-
-
John, B.1
Enright, A.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
Marks, D.6
-
11
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek, A., Grün, D., Poy, M., Wolf, R., Rosenberg, L., Epstein, E., MacMenamin, P., da Piedade, I., Gunsalus, K., Stoffel, M., et al. 2005. Combinatorial microRNA target predictions. Nat. Genet. 37: 495-500.
-
(2005)
Nat. Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grün, D.2
Poy, M.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.6
MacMenamin, P.7
da Piedade, I.8
Gunsalus, K.9
Stoffel, M.10
-
12
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis, B., Shih, I., Jones-Rhoades, M., Bartel, D., and Burge, C. 2003. Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.1
Shih, I.2
Jones-Rhoades, M.3
Bartel, D.4
Burge, C.5
-
13
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis, B.P., Burge, C.B., and Bartel, D.P. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
14
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
Lu, J., Getz, G., Miska, E., Alvarez-Saavedra, E., Lamb, J., Peck, D., Sweet-Cordero, A., Ebert, B., Mak, R., Ferrando, A., et al. 2005. MicroRNA expression profiles classify human cancers. Nature 435: 834-838.
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.3
Alvarez-Saavedra, E.4
Lamb, J.5
Peck, D.6
Sweet-Cordero, A.7
Ebert, B.8
Mak, R.9
Ferrando, A.10
-
15
-
-
40749090479
-
Widespread deregulation of microRNA expression in human prostate cancer
-
Ozen, M., Creighton, C., Ozdemir, M., and Ittmann, M. 2008. Widespread deregulation of microRNA expression in human prostate cancer. Oncogene 27: 1788-1793.
-
(2008)
Oncogene
, vol.27
, pp. 1788-1793
-
-
Ozen, M.1
Creighton, C.2
Ozdemir, M.3
Ittmann, M.4
-
16
-
-
33745248430
-
microRNA target predictions in animals
-
Rajewsky, N. 2006. microRNA target predictions in animals. Nat. Genet. 38 Suppl.: s8-s13.
-
(2006)
Nat. Genet
, vol.38
, Issue.SUPPL.
-
-
Rajewsky, N.1
-
17
-
-
33750318273
-
A guide through present computational approaches for the identification of mammalian microRNA targets
-
Sethupathy, P., Megraw, M., and Hatzigeorgiou, A. 2006. A guide through present computational approaches for the identification of mammalian microRNA targets. Nat. Methods 3: 881-886.
-
(2006)
Nat. Methods
, vol.3
, pp. 881-886
-
-
Sethupathy, P.1
Megraw, M.2
Hatzigeorgiou, A.3
-
18
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey, J.D. and Tibshirani, R. 2003. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. 100: 9440-9445.
-
(2003)
Proc. Natl. Acad. Sci
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
19
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A., Tamayo, P., Mootha, V., Mukherjee, S., Ebert, B., Gillette, M., Paulovich, A., Pomeroy, S., Golub, T., Lander, E., et al. 2005. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. 102: 15545-15550.
-
(2005)
Proc. Natl. Acad. Sci
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.3
Mukherjee, S.4
Ebert, B.5
Gillette, M.6
Paulovich, A.7
Pomeroy, S.8
Golub, T.9
Lander, E.10
-
20
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
Tibshirani, R., Hastie, T., Narasimhan, B., and Chu, G. 2002. Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc. Natl. Acad. Sci. 99: 6567-6572.
-
(2002)
Proc. Natl. Acad. Sci
, vol.99
, pp. 6567-6572
-
-
Tibshirani, R.1
Hastie, T.2
Narasimhan, B.3
Chu, G.4
-
21
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V., Tibshirani, R., and Chu, G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. 98: 5116-5121.
-
(2001)
Proc. Natl. Acad. Sci
, vol.98
, pp. 5116-5121
-
-
Tusher, V.1
Tibshirani, R.2
Chu, G.3
-
22
-
-
33144490646
-
A microRNA expression signature of human solid tumors defines cancer gene targets
-
Volinia, S., Calin, G., Liu, C., Ambs, S., Cimmino, A., Petrocca, F., Visone, R., Iorio, M., Roldo, C., Ferracin, M., et al. 2006. A microRNA expression signature of human solid tumors defines cancer gene targets. Proc. Natl. Acad. Sci. 103: 2257-2261.
-
(2006)
Proc. Natl. Acad. Sci
, vol.103
, pp. 2257-2261
-
-
Volinia, S.1
Calin, G.2
Liu, C.3
Ambs, S.4
Cimmino, A.5
Petrocca, F.6
Visone, R.7
Iorio, M.8
Roldo, C.9
Ferracin, M.10
-
23
-
-
37549017682
-
Gene Set Expression Comparison kit for BRB-ArrayTools
-
Xu, X., Zhao, Y., and Simon, R. 2008. Gene Set Expression Comparison kit for BRB-ArrayTools. Bioinformatics 24: 137-139.
-
(2008)
Bioinformatics
, vol.24
, pp. 137-139
-
-
Xu, X.1
Zhao, Y.2
Simon, R.3
|