메뉴 건너뛰기




Volumn 105, Issue 39, 2008, Pages 14879-14884

A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence

Author keywords

Comparative genomics; Computational biology; Evolutionary conservation; Multiple sequence alignment; Posttranscriptional regulation

Indexed keywords

MICRORNA; LET 7 MICRORNA, HUMAN; LET-7 MICRORNA, HUMAN; RIBONUCLEASE III;

EID: 54449097149     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0803230105     Document Type: Article
Times cited : (499)

References (32)
  • 1
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14:787-799.
    • (2004) Mol Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 2
    • 15244358503 scopus 로고    scopus 로고
    • Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
    • Xie X, et al. (2005) Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 434:338-345.
    • (2005) Nature , vol.434 , pp. 338-345
    • Xie, X.1
  • 3
    • 20944450160 scopus 로고    scopus 로고
    • Combinatorial microRNA target predictions
    • Krek A, et al. (2005) Combinatorial microRNA target predictions. Nat Genet 37:495-500.
    • (2005) Nat Genet , vol.37 , pp. 495-500
    • Krek, A.1
  • 4
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120:15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 6
    • 14044251458 scopus 로고    scopus 로고
    • Human MicroRNA targets
    • John B, et al. (2004) Human MicroRNA targets. PLoS Biol 2:e363.
    • (2004) PLoS Biol , vol.2
    • John, B.1
  • 7
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
    • Grimson A, et al. (2007) MicroRNA targeting specificity in mammals: Determinants beyond seed pairing. Mol Cell 27:91-105.
    • (2007) Mol Cell , vol.27 , pp. 91-105
    • Grimson, A.1
  • 8
    • 28044457883 scopus 로고    scopus 로고
    • MicroRNAs control translation initiation by inhibiting eukaryotic initiation factor 4E/cap and poly(A) tail function
    • Humphreys DT, Westman BJ, Martin DI, Preiss T (2005) MicroRNAs control translation initiation by inhibiting eukaryotic initiation factor 4E/cap and poly(A) tail function. Proc Natl Acad Sci USA 102:16961-16966.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 16961-16966
    • Humphreys, D.T.1    Westman, B.J.2    Martin, D.I.3    Preiss, T.4
  • 9
    • 34347398567 scopus 로고    scopus 로고
    • Inference of miRNA targets using evolutionary conservation and pathway analysis
    • Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M (2007) Inference of miRNA targets using evolutionary conservation and pathway analysis. BMC Bioinformatics 8:69.
    • (2007) BMC Bioinformatics , vol.8 , pp. 69
    • Gaidatzis, D.1    van Nimwegen, E.2    Hausser, J.3    Zavolan, M.4
  • 10
    • 0142173075 scopus 로고    scopus 로고
    • Small RNAs with imperfect match to endogenous mRNA repress translation. Implications for off-target activity of small inhibitory RNA in mammalian cells
    • Saxena S, Jonsson ZO, Dutta A (2003) Small RNAs with imperfect match to endogenous mRNA repress translation. Implications for off-target activity of small inhibitory RNA in mammalian cells. J Biol Chem 278:44312-44319.
    • (2003) J Biol Chem , vol.278 , pp. 44312-44319
    • Saxena, S.1    Jonsson, Z.O.2    Dutta, A.3
  • 11
    • 36049018312 scopus 로고    scopus 로고
    • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    • Stark A, et al. (2007) Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 450:219-232.
    • (2007) Nature , vol.450 , pp. 219-232
    • Stark, A.1
  • 12
    • 34547441263 scopus 로고    scopus 로고
    • Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5′ UTR as in the 3′ UTR
    • Lytle JR, Yario TA, Steitz JA (2007) Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5′ UTR as in the 3′ UTR. Proc Natl Acad Sci USA 104:9667-9672.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 9667-9672
    • Lytle, J.R.1    Yario, T.A.2    Steitz, J.A.3
  • 13
    • 33847032203 scopus 로고    scopus 로고
    • The genetic code is nearly optimal for allowing additional information within protein-coding sequences
    • Itzkovitz S, Alon U (2007) The genetic code is nearly optimal for allowing additional information within protein-coding sequences. Genome Res 17:405-412.
    • (2007) Genome Res , vol.17 , pp. 405-412
    • Itzkovitz, S.1    Alon, U.2
  • 15
    • 0037250168 scopus 로고    scopus 로고
    • The UCSC Genome Browser Database
    • Karolchik D, et al. (2003) The UCSC Genome Browser Database. Nucleic Acids Res 31:51-54.
    • (2003) Nucleic Acids Res , vol.31 , pp. 51-54
    • Karolchik, D.1
  • 16
    • 0347755531 scopus 로고    scopus 로고
    • The UCSC Table Browser data retrieval tool
    • Karolchik D, et al. (2004) The UCSC Table Browser data retrieval tool. Nucleic Acids Res 32:D493-D496.
    • (2004) Nucleic Acids Res , vol.32
    • Karolchik, D.1
  • 17
    • 33749615646 scopus 로고    scopus 로고
    • A machine learning strategy to identify candidate binding sites in human protein-coding sequence
    • Down T, Leong B, Hubbard TJ (2006) A machine learning strategy to identify candidate binding sites in human protein-coding sequence. BMC Bioinformatics 7:419.
    • (2006) BMC Bioinformatics , vol.7 , pp. 419
    • Down, T.1    Leong, B.2    Hubbard, T.J.3
  • 19
    • 33749059160 scopus 로고    scopus 로고
    • miRBase: The microRNA sequence database
    • Griffiths-Jones S (2006) miRBase: The microRNA sequence database. Methods Mol Biol 342:129-138.
    • (2006) Methods Mol Biol , vol.342 , pp. 129-138
    • Griffiths-Jones, S.1
  • 20
    • 0034708122 scopus 로고    scopus 로고
    • The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
    • Reinhart BJ, et al. (2000) The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403:901-906.
    • (2000) Nature , vol.403 , pp. 901-906
    • Reinhart, B.J.1
  • 21
    • 20044395613 scopus 로고    scopus 로고
    • RAS is regulated by the let-7 microRNA family
    • Johnson SM, et al. (2005) RAS is regulated by the let-7 microRNA family. Cell 120:635-647.
    • (2005) Cell , vol.120 , pp. 635-647
    • Johnson, S.M.1
  • 22
    • 12344269924 scopus 로고    scopus 로고
    • GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    • Boyle EI, et al. (2004) GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20:3710-3715.
    • (2004) Bioinformatics , vol.20 , pp. 3710-3715
    • Boyle, E.I.1
  • 23
    • 34548012848 scopus 로고    scopus 로고
    • The let-7 microRNA represses cell proliferation pathways in human cells
    • Johnson CD, et al. (2007) The let-7 microRNA represses cell proliferation pathways in human cells. Cancer Res 67:7713-7722.
    • (2007) Cancer Res , vol.67 , pp. 7713-7722
    • Johnson, C.D.1
  • 24
    • 34249856066 scopus 로고    scopus 로고
    • Distance constraints between microRNA target sites dictate efficacy and cooperativity
    • Saetrom P, et al. (2007) Distance constraints between microRNA target sites dictate efficacy and cooperativity. Nucleic Acids Res 35:2333-2342.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2333-2342
    • Saetrom, P.1
  • 25
    • 33744979613 scopus 로고    scopus 로고
    • Partition function and base pairing probabilities of RNA heterodimers
    • Bernhart SH, et al. (2006) Partition function and base pairing probabilities of RNA heterodimers. Algorithms Mol Biol 1:3.
    • (2006) Algorithms Mol Biol , vol.1 , pp. 3
    • Bernhart, S.H.1
  • 26
    • 2442672918 scopus 로고    scopus 로고
    • A combined computational-experimental approach predicts human microRNA targets
    • Kiriakidou M, et al. (2004) A combined computational-experimental approach predicts human microRNA targets. Genes Dev 18:1165-1178.
    • (2004) Genes Dev , vol.18 , pp. 1165-1178
    • Kiriakidou, M.1
  • 27
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • Kumar S, Hedges SB (1998) A molecular timescale for vertebrate evolution. Nature 392:917-920.
    • (1998) Nature , vol.392 , pp. 917-920
    • Kumar, S.1    Hedges, S.B.2
  • 28
    • 0038076109 scopus 로고    scopus 로고
    • Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation
    • Xie Z, Kasschau KD, Carrington JC (2003) Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 13:784-789.
    • (2003) Curr Biol , vol.13 , pp. 784-789
    • Xie, Z.1    Kasschau, K.D.2    Carrington, J.C.3
  • 29
  • 30
    • 55549127406 scopus 로고    scopus 로고
    • let-7 regulates Dicer expression and constitutes a negative feedback loop
    • 10.1093/carcin/bgn187
    • Tokumaru S, Suzuki M, Yamada H, Nagino M, Takahashi T (2008) let-7 regulates Dicer expression and constitutes a negative feedback loop. Carcinogenesis, 10.1093/carcin/bgn187.
    • (2008) Carcinogenesis
    • Tokumaru, S.1    Suzuki, M.2    Yamada, H.3    Nagino, M.4    Takahashi, T.5
  • 31
    • 49949117302 scopus 로고    scopus 로고
    • Widespread changes in protein synthesis induced by microRNAs
    • Selbach M, et al. (2008) Widespread changes in protein synthesis induced by microRNAs. Nature 455:58-63.
    • (2008) Nature , vol.455 , pp. 58-63
    • Selbach, M.1
  • 32
    • 33644853907 scopus 로고    scopus 로고
    • The colorectal microRNAome
    • Cummings J, et al. (2006) The colorectal microRNAome. PNAS 103:3687-3692.
    • (2006) PNAS , vol.103 , pp. 3687-3692
    • Cummings, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.