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Volumn 6, Issue 10, 2011, Pages

Network based consensus gene signatures for biomarker discovery in breast cancer

Author keywords

[No Author keywords available]

Indexed keywords

ALVESPIMYCIN; CIPROFLOXACIN; ERIBULIN; ERLOTINIB; ESORUBICIN; ESTRAMUSTINE; GEFITINIB; INDISULAM; PACLITAXEL; PERTUZUMAB; RETASPIMYCIN; TANESPIMYCIN; TRASTUZUMAB; TUMOR MARKER;

EID: 84858791095     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0025364     Document Type: Article
Times cited : (21)

References (37)
  • 2
    • 15944365840 scopus 로고    scopus 로고
    • Diagnostic signatures from microarrays: a bioinformatics concept for personalized medicine
    • Spang R, (2003) Diagnostic signatures from microarrays: a bioinformatics concept for personalized medicine. BIOSILICO 1: 64-68.
    • (2003) BIOSILICO , vol.1 , pp. 64-68
    • Spang, R.1
  • 3
    • 41649114164 scopus 로고    scopus 로고
    • Enabling personalized cancer medicine through analysis of geneexpression patterns
    • van't Veer LJ, Bernards R, (2008) Enabling personalized cancer medicine through analysis of geneexpression patterns. Nature 452: 564-570.
    • (2008) Nature , vol.452 , pp. 564-570
    • van't Veer, L.J.1    Bernards, R.2
  • 4
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 6
    • 58149204055 scopus 로고    scopus 로고
    • Arrayexpress update-from an archive of functional genomics experiments to the atlas of gene expression
    • Parkinson H, Kapushesky M, Kolesnikov N, Rustici G, Shojatalab M, et al. (2009) Arrayexpress update-from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res 37: D868-D872.
    • (2009) Nucleic Acids Res , vol.37 , pp. 868-872
    • Parkinson, H.1    Kapushesky, M.2    Kolesnikov, N.3    Rustici, G.4    Shojatalab, M.5
  • 8
    • 13444282534 scopus 로고    scopus 로고
    • Outcome signature genes in breast cancer: is there a unique set?
    • Ein-Dor L, Kela I, Getz G, Givol D, Domany E, (2005) Outcome signature genes in breast cancer: is there a unique set? Bioinformatics 21: 171-178.
    • (2005) Bioinformatics , vol.21 , pp. 171-178
    • Ein-Dor, L.1    Kela, I.2    Getz, G.3    Givol, D.4    Domany, E.5
  • 9
    • 36148981192 scopus 로고    scopus 로고
    • Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer
    • Yu JX, Sieuwerts AM, Zhang Y, Martens JWM, Smid M, et al. (2007) Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer. BMC Cancer 7: 182.
    • (2007) BMC Cancer , vol.7 , pp. 182
    • Yu, J.X.1    Sieuwerts, A.M.2    Zhang, Y.3    Martens, J.W.M.4    Smid, M.5
  • 10
    • 70350248793 scopus 로고    scopus 로고
    • Statistical aspects of gene signatures and molecular targets
    • Gönen M, (2009) Statistical aspects of gene signatures and molecular targets. Gastrointest Cancer Res 3: S19-S21.
    • (2009) Gastrointest Cancer Res , vol.3 , pp. 19-21
    • Gönen, M.1
  • 11
    • 77957364747 scopus 로고    scopus 로고
    • Translating cancer research into targeted therapeutics
    • de Bono JS, Ashworth A, (2010) Translating cancer research into targeted therapeutics. Nature 467: 543-549.
    • (2010) Nature , vol.467 , pp. 543-549
    • de Bono, J.S.1    Ashworth, A.2
  • 12
    • 70349696552 scopus 로고    scopus 로고
    • Bioinformatics and breast cancer: what can high-throughput genomic approaches actually tell us?
    • Sims AH, (2009) Bioinformatics and breast cancer: what can high-throughput genomic approaches actually tell us? J Clin Pathol 62: 879-885.
    • (2009) J Clin Pathol , vol.62 , pp. 879-885
    • Sims, A.H.1
  • 13
    • 77949532152 scopus 로고    scopus 로고
    • Extracting consistent knowledge from highly inconsistent cancer gene data sources
    • Gong X, Wu R, Zhang Y, Zhao W, Cheng L, et al. (2010) Extracting consistent knowledge from highly inconsistent cancer gene data sources. BMC bioinformatics 11: 76.
    • (2010) BMC Bioinformatics , vol.11 , pp. 76
    • Gong, X.1    Wu, R.2    Zhang, Y.3    Zhao, W.4    Cheng, L.5
  • 14
    • 75149195336 scopus 로고    scopus 로고
    • The transcriptional network for mesenchymal transformation of brain tumours
    • Carro MS, Lim WK, Alvarez MJ, Bollo RJ, Zhao X, et al. (2010) The transcriptional network for mesenchymal transformation of brain tumours. Nature 463: 318-325.
    • (2010) Nature , vol.463 , pp. 318-325
    • Carro, M.S.1    Lim, W.K.2    Alvarez, M.J.3    Bollo, R.J.4    Zhao, X.5
  • 15
  • 16
    • 0038244058 scopus 로고    scopus 로고
    • Gene expression predictors of breast cancer outcomes
    • Huang E, Cheng SH, Dressman H, Pittman J, Tsou MH, et al. (2003) Gene expression predictors of breast cancer outcomes. Lancet 361: 1590-1596.
    • (2003) Lancet , vol.361 , pp. 1590-1596
    • Huang, E.1    Cheng, S.H.2    Dressman, H.3    Pittman, J.4    Tsou, M.H.5
  • 17
    • 58149240861 scopus 로고    scopus 로고
    • Integrated gene expression profile predicts prognosis of breast cancer patients
    • Li LF, Xu XJ, Zhao Y, Liu ZB, Shen ZZ, et al. (2009) Integrated gene expression profile predicts prognosis of breast cancer patients. Breast Cancer Res Treat 113: 231-237.
    • (2009) Breast Cancer Res Treat , vol.113 , pp. 231-237
    • Li, L.F.1    Xu, X.J.2    Zhao, Y.3    Liu, Z.B.4    Shen, Z.Z.5
  • 18
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • van't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AAM, et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature 415: 530-536.
    • (2002) Nature , vol.415 , pp. 530-536
    • van't Veer, L.J.1    Dai, H.2    van de Vijver, M.J.3    He, Y.D.4    Hart, A.A.M.5
  • 19
    • 13844310310 scopus 로고    scopus 로고
    • Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
    • Wang Y, Klijn JGM, Zhang Y, Sieuwerts AM, Look MP, et al. (2005) Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 365: 671-679.
    • (2005) Lancet , vol.365 , pp. 671-679
    • Wang, Y.1    Klijn, J.G.M.2    Zhang, Y.3    Sieuwerts, A.M.4    Look, M.P.5
  • 20
    • 33144462268 scopus 로고    scopus 로고
    • Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis
    • Sotiriou C, Wirapati P, Loi S, Harris A, Fox S, et al. (2006) Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis. J Natl Cancer Inst 98: 262-272.
    • (2006) J Natl Cancer Inst , vol.98 , pp. 262-272
    • Sotiriou, C.1    Wirapati, P.2    Loi, S.3    Harris, A.4    Fox, S.5
  • 21
    • 33751261643 scopus 로고    scopus 로고
    • Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer
    • Ivshina AV, George J, Senko O, Mow B, Putti TC, et al. (2006) Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer. Cancer Res 66: 10292-10301.
    • (2006) Cancer Res , vol.66 , pp. 10292-10301
    • Ivshina, A.V.1    George, J.2    Senko, O.3    Mow, B.4    Putti, T.C.5
  • 22
    • 44849101184 scopus 로고    scopus 로고
    • The humoral immune system has a key prognostic impact in node-negative breast cancer
    • Schmidt M, Böhm D, von Törne C, Steiner E, Puhl A, et al. (2008) The humoral immune system has a key prognostic impact in node-negative breast cancer. Cancer Res 68: 5405-5413.
    • (2008) Cancer Res , vol.68 , pp. 5405-5413
    • Schmidt, M.1    Böhm, D.2    von Törne, C.3    Steiner, E.4    Puhl, A.5
  • 23
    • 34447632167 scopus 로고    scopus 로고
    • Gene expression pro-ling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts
    • Pawitan Y, Bjöhle J, Amler L, Borg AL, Egyhazi S, et al. (2005) Gene expression pro-ling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts. Breast Cancer Res 7: R953-R964.
    • (2005) Breast Cancer Res , vol.7 , pp. 953-964
    • Pawitan, Y.1    Bjöhle, J.2    Amler, L.3    Borg, A.L.4    Egyhazi, S.5
  • 26
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini, Y, Yekutieli, D, (2001) The control of the false discovery rate in multiple testing under dependency. Annals of Statistics 29: 1165-1188.
    • (2001) Annals of Statistics , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 27
    • 0034465068 scopus 로고    scopus 로고
    • Progesterone induces focal adhesion in breast cancer cells mda-mb-231 transfected with progesterone receptor complementary dna
    • Lin VC, Ng EH, Aw SE, Tan MG, Ng EH, et al. (2000) Progesterone induces focal adhesion in breast cancer cells mda-mb-231 transfected with progesterone receptor complementary dna. Mol Endocrinol 14: 348-358.
    • (2000) Mol Endocrinol , vol.14 , pp. 348-358
    • Lin, V.C.1    Ng, E.H.2    Aw, S.E.3    Tan, M.G.4    Ng, E.H.5
  • 28
    • 53349097113 scopus 로고    scopus 로고
    • Brca1 is required for meiotic spindle assembly and spindle assembly checkpoint activation in mouse oocytes
    • Xiong B, Li S, Ai JS, Yin S, Ouyang YC, et al. (2008) Brca1 is required for meiotic spindle assembly and spindle assembly checkpoint activation in mouse oocytes. Biol Reprod 79: 718-726.
    • (2008) Biol Reprod , vol.79 , pp. 718-726
    • Xiong, B.1    Li, S.2    Ai, J.S.3    Yin, S.4    Ouyang, Y.C.5
  • 29
    • 0034469045 scopus 로고    scopus 로고
    • Transforming growth factor-beta and breast cancer: Transforming growth factor-beta/smad signaling defects and cancer
    • Kretzschmar M, (2000) Transforming growth factor-beta and breast cancer: Transforming growth factor-beta/smad signaling defects and cancer. Breast Cancer Res 2: 107-115.
    • (2000) Breast Cancer Res , vol.2 , pp. 107-115
    • Kretzschmar, M.1
  • 32
    • 0035942271 scopus 로고    scopus 로고
    • Signi-cance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G, (2001) Signi-cance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98: 5116-5121.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 34
    • 38549126643 scopus 로고    scopus 로고
    • Kegg for linking genomes to life and the environment
    • Kanehisa M, (2008) Kegg for linking genomes to life and the environment. Nucleic Acids Res 36: D480-D484.
    • (2008) Nucleic Acids Res , vol.36 , pp. 480-484
    • Kanehisa, M.1
  • 35
    • 65649116900 scopus 로고    scopus 로고
    • Kegggraph: a graph approach to kegg pathway in r and bioconductor
    • Zhang JD, Wiemann S, (2009) Kegggraph: a graph approach to kegg pathway in r and bioconductor. Bioinformatics 25: 1470-1471.
    • (2009) Bioinformatics , vol.25 , pp. 1470-1471
    • Zhang, J.D.1    Wiemann, S.2
  • 37
    • 78149276744 scopus 로고    scopus 로고
    • Permutation p-values should never be zero: calculating exact p-values when permutations are randomly drawn
    • Phipson B, Smyth GK, (2010) Permutation p-values should never be zero: calculating exact p-values when permutations are randomly drawn. Stat Appl Genet Mol Biol 9: Article39.
    • (2010) Stat Appl Genet Mol Biol , vol.9
    • Phipson, B.1    Smyth, G.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.