Strategies for transcriptome analysis in nonmodel plants

American Journal of Botany

Volumn 99, Issue 2, 2012, Pages 267-276

  Ward, Judson A ^a   Ponnala, Lalit ^b   Weber, Courtney A ^a  

^a New York State Agricultural Experiment Station   (United States)

^b Department of Obstetrics Gynecology   (United States)

Author keywords

De novo transcriptome assembly; Gene expression; Nonmodel organisms; Reference genome independent; RNA seq; Rosaceae; Rubus idaeus

Indexed keywords

PLANT RNA; VEGETABLE PROTEIN;

DATA SET; DICOTYLEDON; GENE EXPRESSION; GENETIC RESOURCE; GENOME; MITOCHONDRIAL DNA; PATHOGEN; SOFTWARE;

COMPARATIVE STUDY; COMPUTER PROGRAM; DISEASE RESISTANCE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC DATABASE; GENETICS; IMMUNOLOGY; METHODOLOGY; MICROBIOLOGY; PATHOGENICITY; PHYTOPHTHORA; PLANT DISEASE; PLANT GENOME; PLANT ROOT; REVIEW; ROSACEAE; SEQUENCE ALIGNMENT;

DATABASES, GENETIC; DISEASE RESISTANCE; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; PHYTOPHTHORA; PLANT DISEASES; PLANT PROTEINS; PLANT ROOTS; RNA, PLANT; ROSACEAE; SEQUENCE ALIGNMENT; SOFTWARE;

FRAGARIA; FRAGARIA VESCA; PHYTOPHTHORA; ROSACEAE; RUBUS GLAUCUS; RUBUS IDAEUS;

EID: 84858593713     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1100334     Document Type: Review

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