Assays for aptamer-based platforms

Biosensors and Bioelectronics

Volumn 34, Issue 1, 2012, Pages 1-11

  Citartan, Marimuthu ^a   Gopinath, Subash C B ^b   Tominaga, Junji ^b   Tan, Soo Choon ^c   Tang, Thean Hock ^a  

^a ADVANCED MEDICAL AND DENTAL INSTITUTE   (Malaysia)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^c INSTITUTE FOR RESEARCH IN MOLECULAR MEDICINE INFORMM   (Malaysia)

Author keywords

Aptamer; Fluorescence; Nano construct; Nano label; SELEX

Indexed keywords

APTAMERS; COMPLEX FORMATIONS; DESIGN STRATEGIES; HIGH AFFINITY; LOW MOLECULAR WEIGHT; MOLECULAR RECOGNITION ELEMENT; NANO-CONSTRUCT; NANO-LABEL; NUMBER OF METHODS; RENATURATION; SELEX; SINGLE-STRANDED DNA; TARGET BINDING; TARGET MOLECULE; TRANSDUCING;

BIOSENSORS; CHEMICAL STABILITY; FLUORESCENCE; MOLECULAR RECOGNITION; OLIGONUCLEOTIDES; RNA;

CHEMICAL MODIFICATION;

APTAMER; NANOMATERIAL; NUCLEIC ACID; OLIGONUCLEOTIDE; SINGLE STRANDED DNA; SINGLE STRANDED RNA;

APTAMER BASED ASSAY; APTAMER LINKED IMMUNOSORBENT ASSAY; ASSAY; BIOSENSOR; DNA DETERMINATION; ELECTROCHEMICAL ANALYSIS; ENZYME LINKED IMMUNOSORBENT ASSAY; FLUORESCENCE ANALYSIS; MOLECULAR BIOLOGY; MOLECULAR PROBE; NANOANALYSIS; NANOTECHNOLOGY; NUCLEIC ACID AMPLIFICATION; NUCLEIC ACID ANALYSIS; PROGNOSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REVIEW; RNA ANALYSIS;

APTAMERS, NUCLEOTIDE; BIOLOGICAL ASSAY; BIOSENSING TECHNIQUES; ELECTROCHEMICAL TECHNIQUES; FLUORESCENCE; HUMANS; NANOPARTICLES;

EID: 84858176151     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2012.01.002     Document Type: Review

References (110)

1. Abell J.L., Driskell J.D., Dluhy R.A., Tripp R.A., Zhao Y.P. Biosens. Bioelectron. 2009, 24:3663-3670.
2. Algar W.R., Tavares A.J., Krull U.J. Anal. Chim. Acta 2010, 673:1-25.
3. Anderson B.J., Larkin C., Guja K., Schildbach J.F. Methods Enzymol. 2008, 450:253-272.
4. Baldrich E., Restrepo A., O'Sullivan C.K. Anal. Chem. 2004, 76:7053-7063.
5. Bogomolova A., Aldissi M. Biosens. Bioelectron. 2011, 26:4099-4103.
6. Boiziau C., Dausse E., Yurchenko L., Toulme J.J. J. Biol. Chem. 1999, 274:12730-12737.
7. Brahim S., Guiseppi-Elie A. Electroanalysis 2005, 17:556-570.
8. Bruno J.G., Carrillo M.P., Phillips T., Hanson D., Bohmann J.A. J. Fluoresc. 2011, 21:2021-2033.
9. Cai H., Lee T.M.H., Hsing I.M. Sens. Actuators B: Chem. 2005, 114:433-437.
10. Calik P., Balci O., Ozdamar T.H. Protein Expres. Purif. 2009, 69:21-28.
11. Centi S., Tombelli S., Palchetti I., Mascini M. Sens. Microsyst. 2010, 54:207-210.
12. Cheng C., Dong J., Yao L., Chen A., Jia R., Huan L., Guo J., Shu Y., Zhang Z. Biochem. Biophys. Res. Commun. 2008, 366:670-674.
13. Cho E.J., Lee J.-W., Ellington A.D. Annu. Rev. Anal. Chem. 2009, 2009(2):241-264.
14. Choi J.H., Chen K.H., Strano M.S. J. Am. Chem. Soc. 2006, 128:15584-15585.
15. Chu T.C., Shieh F., Lavery L.A., Levy M., Richards-Kortum R., Korgel B.A., Ellington A.D. Biosens. Bioelectron. 2006, 21:1859-1866.
16. Edwards K.A., Wang Y., Baeumner A.J. Anal. Bioanal. Chem. 2010, 398:2645-2654.
17. Ellington A.D., Szostak J.W. Nature 1990, 346:818-822.
18. Famulok M., Mayer G. Acc. Chem. Res. 2011, [Epub ahead of print].
19. Fang X., Sen A., Vicens M., Tan W. Chembiochem 2003, 4:829-834.
20. Gopinath S.C.B. Anal. Bioanal. Chem. 2007, 387:171-182.
21. Gopinath S.C.B., Balasundaresan D., Akitomi J., Mizuno H. J. Biochem. 2006, 140:667-676.
22. Gopinath S.C.B., Misono T.S., Kawasaki K., Mizuno T., Imai M., Odagiri T., Kumar P.K.R. J. Gen. Virol. 2006, 87:479-487.
23. Gopinath S.C.B., Shikamoto Y., Mizuno H., Kumar P.K. Thromb. Haemost. 2006, 95:767-771.
24. Guo Z., Ren J., Wang J., Wang E. Talanta 2011, 85:2517-2521.
25. Hamaguchi N., Ellington A., Stanton M. Anal. Biochem. 2001, 294:126-131.
26. Hermann T., Patel D.J. Science 2000, 287:820-825.
27. Hianik T., Wang J. Electroanalysis 2009, 21:1223-1235.
28. Hiep H.M., Saito M., Nakamura Y., Tamiya E. Anal. Bioanal. Chem. 2010, 396:2575-2581.
29. Huang D.W., Niu C.G., Qin P.Z., Ruan M., Zeng G.M. Talanta 2010, 15:185-189.
30. Huh Y.S., Erickson D. Biosens. Bioelectron. 2010, 25:1240-1243.
31. Ikanovic M., Rudzinski W.E., Bruno J.G., Allman A., Carrillo M.P., Dwarakanath S., Bhahdigadi S., Rao P., Kiel J.L., Andrews C.J. J. Fluoresc. 2007, 17:193-199.
32. Ikebukuro K., Kiyohara C., Sode K. Anal. Lett. 2004, 37:2901-2909.
33. Iliuk A.B., Hu L., Tao W.A. Anal. Chem. 2011, 83:4440-4452.
34. Jain C., Belasco J.G. Cell 1996, 87:115-125.
35. Jayasena S.D. Clin. Chem. 1999, 45:1628-1650.
36. Jhaveri S., Rajendran M., Ellington A.D. Nat. Biotechnol. 2000, 18:1293-1297.
37. Kawakamia J., Imanakaa H., Yokotaa Y., Sugimoto N. J. Inorg. Biochem. 2000, 82:197-206.
38. Kim Y.S., Jurng J. Analyst 2011, 136:3720-3724.
39. Kirby R., Cho E.J., Gehrke B., Bayer T., Park Y.S., Neikirk D.P., McDevitt J.T., Ellington A.D. Anal. Chem. 2004, 76:4066-4075.
40. Kong R.M., Zhang X.B., Chen Z., Tan W. Small 2011, [Epub ahead of print].
41. Kwon O.S., Park S.J., Jang J. Biomaterial 2010, 31:4740-4747.
42. Lai R.Y., Plaxco K.W., Heeger A.J. Anal. Chem. 2007, 79:229-233.
43. Lammers T., Kiessling F., Hennink W.E., Storm G. Mol. Pharm. 2010, 7:1899-1912.
44. Lato S.M., Ozerova N.D., He K., Sergueeva Z., Shaw B.R., Burke D.H. Nucleic Acids Res. 2002, 30:1401-1407.
45. Lau I.P., Ngan E.K., Loo J.F., Suen Y.K., Ho H.P., Kong S.K. Biochem. Biophys. Res. Commun. 2010, 395:560-564.
46. Lee J.W., Serna F., Nickels J., Schmidt C.E. Biomacromolecules 2006, 7:1692-1695.
47. Lee M., Walt D.R. Anal. Biochem. 2000, 282:142-146.
48. Lee S., Mayer K.M., Hafner J.H. Anal. Chem. 2009, 81:4450-4455.
49. Li J., Xu M., Huang H., Zhou J., Abdel-Halimb E.S., Zhang J.R., Zhu J.J. Talanta 2011, 85:2113-2120.
50. Li L., Li B., Qi Y., Jin J. Anal. Bioanal. Chem. 2009, 393:2051-2057.
51. Li N., Larson T., Nguyen H.H., Sokolov K.V., Ellington A.D. Chem. Commun. 2010, 46:392-394.
52. Li W., Yang X., Wang K., Tan W., He Y., Guo Q., Tang H., Liu J. Anal. Chem. 2008, 80:5002-5008.
53. Li W., Yang X., Wang K., Tan W., Li H., Ma C. Talanta 2008, 75:770-774.
54. Lim Z.J., Li J.J., Ng C., Yung L.L., Bay B. Acta Pharm. Sin. 2011, 32:983-990.
55. Loo A.H., Bonanni A., Pumera M. Nanoscale 2011, [Epub ahead of print].
56. Lu C.H., Li J., Lin M.H., Wang Y.W., Yang H.H., Chen X., Chen G.N. Angew. Chem. Int. Ed. Engl. 2010, 49:8454-8457.
57. Lu Y., Zhu N., Yu P., Mao L. Analyst 2008, 133:1256-1260.
58. Maehashi K., Matsumoto K., Takamura Y., Tamiyac E. Electroanalysis 2009, 21:1285-1290.
59. Mairal T., Ozalp V.C., Lozano Sanchez P., Mir M., Katakis I., O'Sullivan C.K. Anal. Bioanal. Chem. 2008, 390:989-1007.
60. Mannoor M.S., James T., Ivanov D.V., Beadling L., Braunlin W. Biophys. J. 2010, 98:724-732.
61. McCauley T.G., Hamaguchia N., Stanton M. Anal. Biochem. 2003, 319:244-250.
62. McGuinness R. Curr. Opin. Pharmacol. 2007, 7:535-540.
63. Michalet X., Pinaud F.F., Bentolila L.A., Tsay J.M., Doose S., Li J.J., Sundaresan G., Wu A.M., Gambhir S.S., Weiss S. Science 2005, 307:538-544.
64. Mok W., Li Y. Sensors 2008, 8:7050-7084.
65. Nam J.M., Thaxton C.S., Mirkin C.A. Science 2003, 301:1884-1886.
66. Niazi J.H., Lee S.J., Gu M.B. Bioorg. Med. Chem. 2008, 16:7245-7253.
67. Niebel B., Lentz C., Pofahl M., Mayer G., Hoerauf A., Pfarr K.M., Famulok M. Chemistry 2010, 16:11100-11107.
68. Nirmal M., Brus L. Acc. Chem. Res. 1999, 32:407-414.
69. Numnuam A., Chumbimuni-Torres K.Y., Xiang Y., Bash R., Thavarungkul P., Kanatharana P., Pretsch E., Wang J., Bakker E. Anal. Chem. 2008, 80:707-712.
70. Nutiu R., Yu J.M., Li Y. Chembiochem 2004, 5:1139-1144.
71. Pai S.S., Ellington A.D. Methods Mol. Biol. 2009, 504:385-398.
72. Paige J.S., Wu K.Y., Jaffrey S.R. Science 2011, 333:642-646.
73. Pavlov V., Xiao Y., Shlyahovsky B., Willner I. J. Am. Chem. Soc. 2004, 126:11768-11769.
74. Potyrailo R.A., Conrad R.C., Ellington A.D., Hieftje G.M. Anal. Chem. 1998, 70:3419-3425.
75. Prato M., Kostarelos K., Bianco A. Acc. Chem. Res. 2008, 41:60-68.
76. Sassolas A., Blum L.J., Leca-Bouvier B.D. Biosens. Bioelectron. 2011, 26:3725-3736.
77. Schlecht U., Malave A., Gronewold T., Tewes M., Lohndorf M. Anal. Chim. Acta 2006, 573:65-68.
78. Schurer H., Stembera K., Knoll D., Mayer G., Blind M., Forster H.H., Famulok M., Welzel P., Hahn U. Bioorg. Med. Chem. 2001, 9:2557-2563.
79. Sekiya S., Noda K., Nishikawa F., Yokoyama T., Kumar P.K., Nishikawa S. J. Biochem. 2006, 139:383-390.
80. Shangguan D., Li Y., Tang Z.W., Cao Z.H.C., Chen H.W., Mallikaratchy P., Sefah K., Yang C.Y.J., Tan W.H. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:11838-11843.
81. So H.M., Won K., Kim Y.H., Kim B.K., Ryu B.H., Na P.S., Kim H., Lee J.O. J. Am. Chem. Soc. 2005, 127:11906-11907.
82. Song S., Wang L., Li J., Zhao J., Fan C. Trends Anal. Chem. 2008, 27:108-117.
83. Stevenson R., Baxter H.C., Aitken A., Brown T., Baxter R.L. Bioorg. Chem. 2008, 36:215-219.
84. Stojanovic M.N., de Prada P., Landry D.W. Nucleic Acids Res. 2000, 28:2915-2918.
85. Tang J., Yu T., Guo L., Xie J., Shao N., He Z. Biosens. Bioelectron. 2007, 22:2456-2463.
86. Tennico Y.H., Hutanu D., Koesdjojo M.T., Bartel C.M., Remcho V.T. Anal. Chem. 2010, 82:5591-5597.
87. Ullman E.F., Kirakossian H., Singh S., Wu Z.P., Irvin B.R., Pease J.S., Switchenko A.C., Irvine J.D., Dafforn A., Skold C.N. Proc. Natl. Acad. Sci. U. S. A. 1994, 91:5426-5430.
88. Valeur B. Molecular Fluorescence: Principles and Applications 2001, Wiley-VCH Verlag, GmbH, Paris.
89. Vicens M.C., Sen A., Vanderlaan A., Drake T.J., Tan W. Chembiochem 2005, 6:900-907.
90. Vivekananda J., Kiel J.L. Lab. Invest. 2006, 86:610-618.
91. Wang J. Biosens. Bioelectron. 2006, 21:1887-1892.
92. Wang J., Li T., Guo X., Lu Z. Nucleic Acids Res. 2005, 33:e23.
93. Wang L., Lofton C., Popp M., Tan W.H. Bioconjugate Chem. 2007, 18:610-613.
94. Wang L., Zhu C., Han L., Jin L., Zhou M., Dong S. Chem. Commun. 2011, 47:7794-7796.
95. Wang R.E., Zhang Y., Cai J., Cai W., Gao T. Curr. Med. Chem. 2011, 18:4175-4184.
96. Wang X., Yu Y., Chen Y., Li L., Liu F., Li N. Anal. Bioanal. Chem. 2011, 400:2085-2091.
97. Wang Y., Bao L., Liu Z., Pang D.W. Anal. Chem. 2011, 83:8130-8137.
98. White R.R., Sullenger B.A., Rusconi C.P. J. Clin. Invest. 2000, 106:929-934.
99. Willner I., Zayats M. Angew. Chem. Int. Ed. Engl. 2007, 46:6408-6418.
100. Wochner A., Menger M., Orgel D., Cech B., Rimmele M., Erdmann V.A., Glokler J. Anal. Biochem. 2008, 373:34-42.
101. Wu C., Yan L., Wang C., Lin H., Chen X., Yang C.J. Biosens. Bioelectron. 2010, 25:2232-2237.
102. Xiao Y., Lubin A.A., Heeger A.J., Plaxco K.W. Angew. Chem. Int. Ed. 2005, 44:5456-5459.
103. Xu D.K., Xu D.W., Yu X.B., Liu Z.H., He W., Ma Z.Q. Anal. Chem. 2005, 77:5107-5113.
104. Xu K., Huang J., Ye Z., Ying Y., Li Y. Sensors 2009, 9:5534-5557.
105. Yamamoto R.F., Kumar P.K.R. Anal. Chem. 2005, 77:5460-5466.
106. Yamana K., Ohtani Y., Nakano H., Saito I. Bioorg. Med. Chem. Lett. 2003, 13:3429-3431.
107. Yang L., Zhang X., Ye M., Jiang J., Yang R., Fu T., Chen Y., Wang K., Liu C., Tan W. Adv. Drug Deliv. Rev. 2011, 63:1361-1370.
108. Yoon H., Kim J.H., Lee N., Kim B.G., Jang J. Chembiochem 2008, 9:634-641.
109. Yoshida Y., Sakai N., Masuda H., Furuichi M., Nishikawa F., Nishikawa S., Mizuno H., Waga I. Anal. Biochem. 2008, 375:217-222.
110. Zhang D.W., Sun C.J., Zhang F.T., Xu L., Zhou Y.L., Zhang X.X. Biosens. Bioelectron. 2011, [Epub ahead of print].