Aptasensor development: Elucidation of critical parameters for optimal aptamer performance

Analytical Chemistry

Volumn 76, Issue 23, 2005, Pages 7053-7063

  Baldrich, Eva ^a   Restrepo, Alexandre ^b   O'Sullivan, Ciara K ^a,b  

^a UNIVERSITAT ROVIRA I VIRGILI   (Spain)

^b INSTITUCIÓ CATALANA DE RECERCA I ESTUDIS AVANÇATS ICREA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODIES; BIOASSAY; CELL IMMOBILIZATION; CHEMICAL BONDS; DNA; ELECTROPHORESIS; NUCLEAR MAGNETIC RESONANCE;

APTAMERS; ELUCIDATION; THROMBIN;

ORGANIC COMPOUNDS;

APTAMER; BUFFER;

ANALYTIC METHOD; ARTICLE; BINDING AFFINITY; DEGRADATION KINETICS; DNA DETERMINATION; ELECTROPHORESIS; ENZYME ASSAY; ENZYME LINKED IMMUNOSORBENT ASSAY; INCUBATION TIME; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE; PARAMETER; PERFORMANCE; PROTEIN BINDING; REACTION OPTIMIZATION; SENSITIVITY ANALYSIS; STRUCTURE ANALYSIS; TEMPERATURE DEPENDENCE;

APTAMERS, NUCLEOTIDE; BIOSENSING TECHNIQUES; BUFFERS; ELECTROPHORESIS; ENZYME-LINKED IMMUNOSORBENT ASSAY; EQUIPMENT DESIGN; GOLD; HYDROGEN-ION CONCENTRATION; MAGNETIC RESONANCE SPECTROSCOPY; POTASSIUM; SENSITIVITY AND SPECIFICITY; SURFACE PLASMON RESONANCE; SURFACE PROPERTIES; TEMPERATURE; TIME FACTORS;

EID: 10044277172     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac049258o     Document Type: Article

References (66)

1. Robertson, D. L.; Joyce, G. F. Nature 1990, 344, 467-8.
2. Ellington, A. D.; Szostak, J. W. Nature 1990, 346, 818-22.
3. Tuerk, C.; Gold, L. Science 1990, 249, 505-10.
4. Hesselberth, J.; Robertson, M. P.; Jhaveri, S.; Ellington, A. D. Rev. Mol. Biotechnol. 2000, 74, 15-25.
5. Haller, A. A.; Sarnow, P. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 8521-6.
6. Gebhardt, K.; Shokraei, A.; Babaie, E.; Lindquist, B. H. Biochemistry 2000, 39, 7255-65.
7. Wilson, D. S.; Keefe, A. D.; Szostak, J. W. Proc. Natl. Acad. Sci. U.S.A. 2001, 98 (7), 3750-5.
8. Kawakami, J.; Imanaka, H.; Yokota, Y.; Sugimoto, N. J. Inorg. Biochem. 2000, 82 (1-4), 197-206.
9. Brody, E. N.; Gold, L. J. Mol. Biotechnol. 2000, 74, 5-13.
10. Geiger, A.; Burgstaller, P.; von der Eltz, H.; Roeder, A.; Famulok, M. Nucleic Acids Res. 1996, 24, 1029-36.
11. James, W. In Encyclopedia of Analytical Chemistry; Meyers, R. A., Ed.; John Wiley and Sons Ltd.: Chichester, 2000.
12. Osbourne, S. E.; Matsumura, I.; Ellington, A. D. Curr. Opin. Chem. Biol. 1997, 1, 5-9.
13. O'Sullivan, C. K. Anal. Bioanal. Chem. 2002, 372, 44-8.
14. Cox, J. C.; Ellington, A. D. Bioorg. Med. Chem. 2001, 9, 2525-31.
15. Cox, J. C.; Rudolph, P.; Ellington, A. D. Biotechnol. Prog. 1998, 14, 845-50.
16. Jayasena, S. D. Clin. Chem. 1999, 45, 1628-50.
17. Famulok, M. J. Am. Chem. Soc. 1994, 116, 1698-706.
18. Kusser, W. J. Biotechnol 2000, 74, 27-38.
19. Klussman, S.; Nolte, A.; Bald, R.; Erdmann, V. A.; Fürste, J. P. Nat. Biotechnol. 1996, 14, 1112-6.
20. Nolte, A.; Klussman, S.; Bald, R.; Erdmann, V. A.; Fürste, J. P. Nat. Biotechnol. 1996, 14, 1116.
21. Pieken, W. A.; Olsen, D. B.; Benseler, F.; Aurup, H.; Eckstein, F. Science 1991, 253, 314-7.
22. Williams, D. M.; Benseler, F.; Eckstein, F. Biochemistry 1991, 30, 4001-9.
23. Bock, L. C.; Griffin, L. C.; Latham, J. A.; Vermaas, E. H.; Toole, J. J. Nature 1992, 355, 564-6.
24. Smirnov, I.; Shafer, R. H. Biochemistry 2000, 39, 1462-8.
25. Hamaguchi, N.; Ellington, A.; Stanton, M. Anal. Biochem. 2001, 294, 126-31.
26. Li, J. J.; Fang, X.; Tan, W. Biochem. Biophys. Res. Commun. 2002, 292, 31-40.
27. Macaya, R. F.; Schultze, P.; Smith, F. W.; Roe, J. A.; Feigon, J. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 3745.
28. Schultze, P.; Macaya, R. F.; Feigon, J. J. Mol. Biol. 1994, 235, 1532.
29. Padmanabhan, K.; Padmanabhan, K. P.; Ferrara, J. D.; Sadler, J. E.; Tulinsky, A. J. Biol. Chem. 1993, 268, 17651-4.
30. Marathias, V. M.; Bolton, P. H. Biochemistry 1999, 38, 4355-64.
31. Smirnov, I.; Shafer, R. H. J. Mol. Biol. 2002, 296, 1-5.
32. Vairamani, M.; Gross, M. L. J. Am. Chem. Soc. 2003, 125, 42-3.
33. Kamkia, B. I.; Marky, L. A. J. Am. Chem. Soc. 2001, 123, 10799-804.
34. Ho, H. A.; Leclerc, M. J. Am. Chem. Soc. 2004, 126, 1384-7.
35. Drolet, D. W.; Moon-McDermott, L.; Romig, T. S. Nat. Biotechnol. 1996, 14, 1021-5.
36. Rye, P. D.; Nustad, K. BioTechniques 2001, 30, 290-5.
37. Yang, X.; Li, X.; Prow, T. W.; Reece, L. M.; Bassett, S. E.; Luxon, B. A.; Herzog, N. K.; Aronson, J.; Shope, R. E.; Leary, J. F.; Gorenstein, D. G. Nucleic Acids Res. 2003, 31, e54.
38. Kleinjung, F.; Klussmann, S.; Erdmann, V. A.; Scheller, F. W.; Fürste, J. P.; Bier, F. F. Anal. Chem. 1998, 70, 328-31.
39. Potyrailo, R. A.; Conrad, R. C.; Ellington, A. D.; Hieftje, G. M. Anal. Chem. 1998, 70, 3419-25.
40. Hartmann, R.; Norby, P. L.; Martensen, P. M.; Jorgensen, P.; James, M. C.; Jacobsen, C.; Moestrup, S. K.; Clemens, M. J.; Justesen, J. J. Biol. Chem. 1998, 273, 3236-46.
41. Kraus, E.; James, W.; Barclay, A. N. J. Immunol. 1998, 160, 5209-12.
42. Lee, M.; Walt, D. R. Anal. Biochem. 2000, 282, 142-6.
43. Liss, M.; Petersen, B.; Wolf, H.; Prohaska, E. Anal. Chem. 2002, 74, 4488-95.
44. Stojanovic, M. N.; de Prada, P.; Landry, D. W. J. Am. Chem. Soc. 2001, 123, 4928-31.
45. Frauendorf, C.; Jäschke, A. Bioorg. Med. Chem. 2001, 9, 2521-4.
46. Yamamoto, R.; Kumar, P. K. R. Genes Cells 2002, 5, 389-96.
47. Fang, X.; Sen, A.; Vicens, M.; Tan, W. Chem. Biol. Chem. 2003, 4, 829-34.
48. Liu, X.; Zhang, D.; Cao, G.; Yang, G.; Ding, H.; Liu, G.; Fan, M.; Shen, B.; Shao, N. J. Mol. Recognit. 2003, 16, 23-7.
49. Hermanson, G. T. Bioconjugate Techniques; Academic Press: San Diego, CA, 1996.
50. Romano, M.; Baralle, F. E.; Patriarca, P. Eur. J. Biochem. 2000, 267, 3704-11.
51. Schultze, P.; Hud, N. V.; Smith, F. W.; Feigon, J. Nucleic Acids Res. 1999, 27, 3018-28.
52. Crowther, J. R. In Methods in Molecular Biology; Humana Press: Totowa, NJ, 1995.
53. Keniry, M. A. Biopolymers 2001, 56, 123-46.
54. Miyoshi, D.; Nakao, A.; Sugimoto, N. Nucleic Acids Res. 2003, 31 (4), 1156-63.
55. Bouaziz, S.; Kettani, A.; Patel, D. J. J. Mol. Biol. 1998, 282, 637-52.
56. Smirnov, I. V.; Kotch, F. W.; Pickering, I. J.; Davis, J. T.; Shafer, R. H. Biochemistry 2002, 41, 12133-9.
57. Arthanari, H.; Basu, S.; Kawano, T. L.; Bolton, P. H. Nucleic Acids Res. 1998, 26 (16), 3724-8.
58. Jing, N.; Hogan, M. E. J. Biol. Chem. 1998, 273, 34992-9.
59. Kuzmic, P. Anal. Biochem. 1999, 267, 17-23.
60. Kelly, J. A.; Feigon, J.; Yeates, T. O. J. Mol. Biol. 1996, 256, 417-22.
61. Tsiang, M.; Jain, A. K.; Dunn, K. E.; Rojas, M. E.; Leung, L. L.; Gibbs, C. S. Biol. Chem. 1995, 270, 16854-63.
62. Dougan, H.; Lyster, D. M.; Vo, C. V.; Stafford, A.; Weitz, J. I.; Hobbs, J. B. Nucl. Med. Biol. 2000, 27, 289-97.
63. Paborsky, L. R.; McCurdy, S. N.; Griffin, L. C.; Toole, J. J.; Leung, L. L. K. J. Biol. Chem. 1993, 268, 20808-11.
64. Datta, B.; Armitage, B. A. J. Am. Chem. Soc. 2001, 123, 9612-9.
65. Giraldo, R.; Suzuki, M.; Chapman, L.; Rhodes, D. Proc. Natl. Scad. Sci. U.S.A. 1994, 91, 7658-62.
66. Fang, G.; Cech, T. R. Biochemistry 1993, 32, 11646-57.