메뉴 건너뛰기




Volumn 21, Issue 5, 2011, Pages 2021-2033

DNA aptamer beacon assay for C-telopeptide and handheld fluorometer to monitor bone resorption

Author keywords

Aptamer; Bone; Fluorescence; Handheld; Osteoporosis

Indexed keywords

APTAMER SEQUENCES; APTAMERS; ASSAY DEVELOPMENT; BONE COLLAGEN; BONE RESORPTION; COMPUTER MODELS; FLUORESCENCE LEVEL; HANDHELDS; HEALTH MONITORING; HUMAN URINE; LIMIT OF DETECTION; LOOP STRUCTURE; OSTEOPOROSIS; POINT OF CARE; POTENTIAL BINDING; SECONDARY STRUCTURES;

EID: 80053012051     PISSN: 10530509     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10895-011-0903-6     Document Type: Article
Times cited : (39)

References (33)
  • 2
    • 14944340214 scopus 로고    scopus 로고
    • The nutritional status of astronauts is altered after long-term space flight aboard the International Space Station
    • SM Smith SR Zwart G Block BL Rice JE Davis-Street 2005 The nutritional status of astronauts is altered after long-term spaceflight aboard the international space station J Nutr 135 437 443 15735075 1:CAS:528: DC%2BD2MXit12ntr8%3D (Pubitemid 40365200)
    • (2005) Journal of Nutrition , vol.135 , Issue.3 , pp. 437-443
    • Smith, S.M.1    Zwart, S.R.2    Block, G.3    Rice, B.L.4    Davis-Street, J.E.5
  • 3
    • 0034141218 scopus 로고    scopus 로고
    • Collagen fragments in urine derived from bone resorption are highly racemized and isomerized: A biological clock of protein aging with clinical potential
    • DOI 10.1042/0264-6021:3450473
    • PA Cloos C Fledelius 2000 Collagen fragments in urine derived from bone resorption are highly racemized and isomerized: a biological clock of protein aging with clinical potential Biochem J 345 473 480 10642504 10.1042/0264-6021:3450473 1:CAS:528:DC%2BD3cXisFOlsbw%3D (Pubitemid 30099075)
    • (2000) Biochemical Journal , vol.345 , Issue.3 , pp. 473-480
    • Cloos, P.A.C.1    Fledelius, C.2
  • 4
    • 63449090005 scopus 로고    scopus 로고
    • Initial development of competitive FRET-aptamer assays for monitoring bone metabolism
    • JG Bruno MP Carrillo T Phillips R Crowell 2007 Initial development of competitive FRET-aptamer assays for monitoring bone metabolism J Clin Ligand Assay 30 81 89
    • (2007) J Clin Ligand Assay , vol.30 , pp. 81-89
    • Bruno, J.G.1    Carrillo, M.P.2    Phillips, T.3    Crowell, R.4
  • 5
    • 63449138532 scopus 로고    scopus 로고
    • Development of DNA aptamers to a foot-and-mouth disease peptide for competitive FRET-based detection
    • JG Bruno MP Carrillo T Phillips 2008 Development of DNA aptamers to a foot-and-mouth disease peptide for competitive FRET-based detection J Biomolec Techn 19 109 115
    • (2008) J Biomolec Techn , vol.19 , pp. 109-115
    • Bruno, J.G.1    Carrillo, M.P.2    Phillips, T.3
  • 6
    • 51649114079 scopus 로고    scopus 로고
    • Competitive FRET-aptamer-based detection of methylphosphonic acid: A common nerve agent metabolite
    • 10.1007/s10895-008-0316-3 1:CAS:528:DC%2BD1cXhtFegurjO
    • JG Bruno MP Carrillo T Phillips NK Vail D Hanson 2008 Competitive FRET-aptamer-based detection of methylphosphonic acid: a common nerve agent metabolite J Fluorescence 18 867 876 10.1007/s10895-008-0316-3 1:CAS:528:DC%2BD1cXhtFegurjO
    • (2008) J Fluorescence , vol.18 , pp. 867-876
    • Bruno, J.G.1    Carrillo, M.P.2    Phillips, T.3    Vail, N.K.4    Hanson, D.5
  • 7
    • 78651370075 scopus 로고    scopus 로고
    • A novel screening method for competitive FRET-aptamers applied to E. coli assay development
    • 10.1007/s10895-010-0670-9 1:CAS:528:DC%2BC3cXhsFOqtLzK
    • JG Bruno MP Carrillo T Phillips CJ Andrews 2010 A novel screening method for competitive FRET-aptamers applied to E. coli assay development J Fluorescence 20 1211 1223 10.1007/s10895-010-0670-9 1:CAS:528:DC%2BC3cXhsFOqtLzK
    • (2010) J Fluorescence , vol.20 , pp. 1211-1223
    • Bruno, J.G.1    Carrillo, M.P.2    Phillips, T.3    Andrews, C.J.4
  • 8
    • 0029904020 scopus 로고    scopus 로고
    • Solution structure of an ATP-binding RNA aptamer reveals a novel fold
    • T Dieckmann E Suzuki GK Nakamura J Feigon 1996 Solution structure of an ATP-binding RNA aptamer reveals a novel fold RNA 2 628 640 8756406 1:CAS:528:DyaK28XkvFWnsrk%3D (Pubitemid 26374215)
    • (1996) RNA , vol.2 , Issue.7 , pp. 628-640
    • Dieckmann, T.1    Suzuki, E.2    Nakamura, G.K.3    Feigon, J.4
  • 9
    • 0035879386 scopus 로고    scopus 로고
    • Aptamer beacons for the direct detection of proteins
    • DOI 10.1006/abio.2001.5169
    • N Hamaguchi A Ellington M Stanton 2001 Aptamer beacons for the direct detection of proteins Anal Biochem 294 126 131 11444807 10.1006/abio.2001.5169 1:CAS:528:DC%2BD3MXkvFOrtLg%3D (Pubitemid 32641757)
    • (2001) Analytical Biochemistry , vol.294 , Issue.2 , pp. 126-131
    • Hamaguchi, N.1    Ellington, A.2    Stanton, M.3
  • 10
    • 33745713212 scopus 로고    scopus 로고
    • Biomolecular sensor based on fluorescence-labeled aptamer
    • 10.1016/j.bmcl.2006.05.054 1:CAS:528:DC%2BD28XmvFertLc%3D
    • H Ozaki A Nishihira M Wakabayashi M Kuwahara H Sawai 2006 Biomolecular sensor based on fluorescence-labeled aptamer Biorg Med Chem Lett 16 4381 4384 10.1016/j.bmcl.2006.05.054 1:CAS:528:DC%2BD28XmvFertLc%3D
    • (2006) Biorg Med Chem Lett , vol.16 , pp. 4381-4384
    • Ozaki, H.1    Nishihira, A.2    Wakabayashi, M.3    Kuwahara, M.4    Sawai, H.5
  • 11
    • 34548726217 scopus 로고    scopus 로고
    • Ligand recognition determinants of guanine riboswitches
    • DOI 10.1093/nar/gkm572
    • J Muhlbacher DA Lafontaine 2007 Ligand recognition determinants of guanine riboswitches Nucl Acids Res 35 5568 5580 10.1093/nar/gkm572 (Pubitemid 47423928)
    • (2007) Nucleic Acids Research , vol.35 , Issue.16 , pp. 5568-5580
    • Mulhbacher, J.1    Lafontaine, D.A.2
  • 12
    • 0030999235 scopus 로고    scopus 로고
    • Characterization of urinary degradation products derived from type I collagen. Identification of a β-isomerized ASP-GLY sequence within the C- terminal telopeptide (α1) region
    • DOI 10.1074/jbc.272.15.9755
    • C Fledelius AH Johnsen PAC Cloos M Bonde P Qvist 1997 Characterization of urinary degradation products derived from type I collagen. Identification of a β-isomerized asp-gly sequence within the C-terminal telopeptide (α1) region J Biol Chem 272 9755 9763 9092508 10.1074/jbc.272.15.9755 1:CAS:528:DyaK2sXisFOktbo%3D (Pubitemid 27171639)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.15 , pp. 9755-9763
    • Fledelius, C.1    Johnsen, A.H.2    Cloos, P.A.C.3    Bonde, M.4    Qvist, P.5
  • 13
    • 33646827389 scopus 로고    scopus 로고
    • Biochemical markers of bone turnover. Part I: Biochemistry and variability
    • 16648882
    • MJ Seibel 2005 Biochemical markers of bone turnover. Part I: biochemistry and variability Clin Biochem Rev 26 97 122 16648882
    • (2005) Clin Biochem Rev , vol.26 , pp. 97-122
    • Seibel, M.J.1
  • 14
    • 66149087064 scopus 로고    scopus 로고
    • DNA aptamers developed against a soman derivative cross-react with methylphosphonic acid but not with the flanking hydrophobic groups
    • 10.1002/jmr.932 1:CAS:528:DC%2BD1MXltFSjsb0%3D
    • JG Bruno MP Carrillo CL Cadieux DL Lenz DM Cerasoli T Phillips 2009 DNA aptamers developed against a soman derivative cross-react with methylphosphonic acid but not with the flanking hydrophobic groups J Molec Recogn 22 197 204 10.1002/jmr.932 1:CAS:528:DC%2BD1MXltFSjsb0%3D
    • (2009) J Molec Recogn , vol.22 , pp. 197-204
    • Bruno, J.G.1    Carrillo, M.P.2    Cadieux, C.L.3    Lenz, D.L.4    Cerasoli, D.M.5    Phillips, T.6
  • 16
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest- neighbor thermodynamics
    • DOI 10.1073/pnas.95.4.1460
    • J SantaLucia 1998 A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics Proc Natl Acad Sci USA 95 1460 1465 9465037 10.1073/pnas.95.4.1460 1:CAS:528:DyaK1cXht1Wqsbc%3D (Pubitemid 28103414)
    • (1998) Proceedings of the National Academy of Sciences of the United States of America , vol.95 , Issue.4 , pp. 1460-1465
    • Santalucia Jr., J.1
  • 17
    • 0030248996 scopus 로고    scopus 로고
    • Low-resolution docking: Prediction of complexes for underdetermined structures
    • 8756522 10.1002/(SICI)1097-0282(199609)39:3<455::AID-BIP16>3.3. CO;2-8 1:CAS:528:DyaK28XltVWrtbs%3D
    • IA Vakser 1996 Low-resolution docking: prediction of complexes for underdetermined structures Biopolymers 39 455 464 8756522 10.1002/(SICI)1097- 0282(199609)39:3<455::AID-BIP16>3.3.CO;2-8 1:CAS:528:DyaK28XltVWrtbs%3D
    • (1996) Biopolymers , vol.39 , pp. 455-464
    • Vakser, I.A.1
  • 18
    • 69549120468 scopus 로고    scopus 로고
    • Thermodynamic basis for the optimization of binding-induced biomolecular switches and structure-switching biosensors
    • 19666496 10.1073/pnas.0904005106
    • A Vallée-Bélisle F Ricci KW Plaxco 2009 Thermodynamic basis for the optimization of binding-induced biomolecular switches and structure-switching biosensors Proc Natl Acad Sci USA 106 13802 13807 19666496 10.1073/pnas.0904005106
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 13802-13807
    • Vallée-Bélisle, A.1    Ricci, F.2    Plaxco, K.W.3
  • 19
    • 0035675247 scopus 로고    scopus 로고
    • A new monoclonal antibody ELISA for detection and characterization of C-telopeptide fragments of type I collagen in urine
    • DOI 10.1007/s00223-001-1034-x
    • AK Srivastava G MacFarlane VP Srivastava S Mohan DJ Baylink 2001 A new monoclonal antibody ELISA for detection and characterization of C-telopeptide fragments of type I collagen in urine Calcified Tissue Int 69 327 336 10.1007/s00223-001-1034-x 1:CAS:528:DC%2BD38XpvFyktg%3D%3D (Pubitemid 34056795)
    • (2001) Calcified Tissue International , vol.69 , Issue.6 , pp. 327-336
    • Srivastava, A.K.1    MacFarlane, G.2    Srivastava, V.P.3    Mohan, S.4    Baylink, D.J.5
  • 20
    • 0031761305 scopus 로고    scopus 로고
    • Clinical evaluation of the Serum CrossLaps One Step ELISA, a new assay measuring the serum concentration of bone-derived degradation products of type I collagen C-telopeptides
    • S Christgau C Rosenquist P Alexandersen NH Bjarnason P Ravn C Fledelius C Herling P Qvist C Christiansen 1998 Clinical evaluation of the Serum CrossLaps One Step ELISA, a new assay measuring the serum concentration of bone-derived degradation products of type I collagen C-telopeptides Clin Chem 44 2290 2300 9799756 1:CAS:528:DyaK1cXnt1Olt78%3D (Pubitemid 28511751)
    • (1998) Clinical Chemistry , vol.44 , Issue.11 , pp. 2290-2300
    • Christgau, S.1    Rosenquist, C.2    Alexandersen, P.3    Bjarnason, N.H.4    Ravn, P.5    Fledelius, C.6    Herling, C.7    Qvist, P.8    Christiansen, C.9
  • 21
    • 48449100540 scopus 로고    scopus 로고
    • Bioinformatic analysis of the contribution of primer sequences to aptamer structures
    • 18594898 10.1007/s00239-008-9130-4 1:CAS:528:DC%2BD1cXptVyhsb0%3D
    • MC Cowperthwaite AD Ellington 2008 Bioinformatic analysis of the contribution of primer sequences to aptamer structures J Mol Evol 67 95 102 18594898 10.1007/s00239-008-9130-4 1:CAS:528:DC%2BD1cXptVyhsb0%3D
    • (2008) J Mol Evol , vol.67 , pp. 95-102
    • Cowperthwaite, M.C.1    Ellington, A.D.2
  • 22
    • 33746819264 scopus 로고    scopus 로고
    • In vitro selection using a dual RNA library that allows primerless selection
    • 16855281 10.1093/nar/gkl463
    • F Jarosch K Buchner S Klussmann 2006 In vitro selection using a dual RNA library that allows primerless selection Nucleic Acids Res 34 e86 16855281 10.1093/nar/gkl463
    • (2006) Nucleic Acids Res , vol.34 , pp. 86
    • Jarosch, F.1    Buchner, K.2    Klussmann, S.3
  • 23
    • 66349124725 scopus 로고    scopus 로고
    • The shorter the better: Reducing fixed primer regions of oligonucleotide libraries for aptamer selection
    • 19384268 10.3390/molecules14041353 1:CAS:528:DC%2BD1MXltFaisbw%3D
    • W Pan GA Clawson 2009 The shorter the better: reducing fixed primer regions of oligonucleotide libraries for aptamer selection Molecules 14 1353 1369 19384268 10.3390/molecules14041353 1:CAS:528:DC%2BD1MXltFaisbw%3D
    • (2009) Molecules , vol.14 , pp. 1353-1369
    • Pan, W.1    Clawson, G.A.2
  • 24
    • 0025810836 scopus 로고
    • Inhibitory effects of urine on the polymerase chain reaction for cytomegalovirus DNA
    • 1646235 10.1136/jcp.44.5.360 1:STN:280:DyaK3M3lvVGluw%3D%3D
    • G Khan HO Kangro PJ Coates RB Heath 1991 Inhibitory effects of urine on the polymerase chain reaction for cytomegalovirus DNA J Clin Pathol 44 360 365 1646235 10.1136/jcp.44.5.360 1:STN:280:DyaK3M3lvVGluw%3D%3D
    • (1991) J Clin Pathol , vol.44 , pp. 360-365
    • Khan, G.1    Kangro, H.O.2    Coates, P.J.3    Heath, R.B.4
  • 26
    • 40549144358 scopus 로고    scopus 로고
    • Aptamer-based fluorescence sensor for rapid detection of potassium ions in urine
    • DOI 10.1039/b718752a
    • CC Huang HT Chang 2008 Aptamer-based fluorescence sensor for rapid detection of potassium ions in urine Chem Commun (Camb) 28 1461 1463 10.1039/b718752a (Pubitemid 351367582)
    • (2008) Chemical Communications , Issue.12 , pp. 1461-1463
    • Huang, C.-C.1    Chang, H.-T.2
  • 27
    • 72049098445 scopus 로고    scopus 로고
    • Determination of urinary adenosine using resonance light scattering of gold nanoparticles modified structure-switching aptamer
    • 19849997 10.1016/j.ab.2009.10.027
    • JQ Zhang YS Wang Y He T Jiang HM Yang X Tan RH Kang YK Yuan LF Shi 2009 Determination of urinary adenosine using resonance light scattering of gold nanoparticles modified structure-switching aptamer Anal Biochem 397 212 217 19849997 10.1016/j.ab.2009.10.027
    • (2009) Anal Biochem , vol.397 , pp. 212-217
    • Zhang, J.Q.1    Wang, Y.S.2    He, Y.3    Jiang, T.4    Yang, H.M.5    Tan, X.6    Kang, R.H.7    Yuan, Y.K.8    Shi, L.F.9
  • 28
    • 0141988971 scopus 로고    scopus 로고
    • Fluorogenic resolution of ligand binding by a nucleic acid aptamer
    • DOI 10.1021/ja035299a
    • EJ Merino KM Weeks 2003 Fluorogenic resolution of ligand binding by a nucleic acid aptamer J Am Chem Soc 125 12370 12371 14531655 10.1021/ja035299a 1:CAS:528:DC%2BD3sXntlymtbs%3D (Pubitemid 37254731)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.41 , pp. 12370-12371
    • Merino, E.J.1    Weeks, K.M.2
  • 29
    • 77956819822 scopus 로고    scopus 로고
    • Characterization and evaluation of two-dimensional microfluidic chip-HPLC coupled to tandem mass spectrometry for quantitative analysis of 7-aminoflunitrazepam in human urine
    • 20820494 10.1039/c0an00355g 1:CAS:528:DC%2BC3cXhtFOrsbrI
    • HY Bai SL Lin SA Chan MR Fuh 2010 Characterization and evaluation of two-dimensional microfluidic chip-HPLC coupled to tandem mass spectrometry for quantitative analysis of 7-aminoflunitrazepam in human urine Analyst 135 2737 2742 20820494 10.1039/c0an00355g 1:CAS:528:DC%2BC3cXhtFOrsbrI
    • (2010) Analyst , vol.135 , pp. 2737-2742
    • Bai, H.Y.1    Lin, S.L.2    Chan, S.A.3    Fuh, M.R.4
  • 30
    • 77954969352 scopus 로고    scopus 로고
    • Liquid chromatography on chip
    • 20603823 10.1002/elps.201000051 1:CAS:528:DC%2BC3cXptlGgt7w%3D
    • K Faure 2010 Liquid chromatography on chip Electrophoresis 31 2499 2511 20603823 10.1002/elps.201000051 1:CAS:528:DC%2BC3cXptlGgt7w%3D
    • (2010) Electrophoresis , vol.31 , pp. 2499-2511
    • Faure, K.1
  • 31
    • 12244313377 scopus 로고
    • The use of polyacrylamide gels for chromatography of proteins
    • 10.1139/v65-125 1:CAS:528:DyaF2MXosVWrsg%3D%3D
    • K Sun AH Sehon 1965 The use of polyacrylamide gels for chromatography of proteins Can J Chem 43 969 976 10.1139/v65-125 1:CAS:528:DyaF2MXosVWrsg%3D%3D
    • (1965) Can J Chem , vol.43 , pp. 969-976
    • Sun, K.1    Sehon, A.H.2
  • 32
    • 0029905159 scopus 로고    scopus 로고
    • Coated-tube radioimmunoassay for C-telopeptides of type I collagen to assess bone resorption
    • M Bonde C Fledelius P Qvist C Christiansen 1996 Coated-tube radioimmunoassay for C-telopeptides of type 1 collagen to assess bone resorption Clin Chem 42 1639 1644 8855148 1:CAS:528:DyaK28Xmt1eqsL8%3D (Pubitemid 26354743)
    • (1996) Clinical Chemistry , vol.42 , Issue.10 , pp. 1639-1644
    • Bonde, M.1    Fledelius, C.2    Qvist, P.3    Christiansen, C.4
  • 33
    • 0034917362 scopus 로고    scopus 로고
    • Clinical evaluation of the Elecsys β-CrossLaps serum assay, a new assay for degradation products of type I collagen C-telopeptides
    • R Okabe K Nakatsuka M Inaba T Miki H Naka H Masaki A Moriguchi Y Nishizawa 2001 Clinical evaluation of the Elecsys β-CrossLaps serum assay, a new assay for degradation products of type I collagen C-telopeptides Clin Chem 47 1410 1414 11468230 1:CAS:528:DC%2BD3MXls1Squr0%3D (Pubitemid 32678819)
    • (2001) Clinical Chemistry , vol.47 , Issue.8 , pp. 1410-1414
    • Okabe, R.1    Nakatsuka, K.2    Inaba, M.3    Miki, T.4    Naka, H.5    Masaki, H.6    Moriguchi, A.7    Nishizawa, Y.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.