메뉴 건너뛰기




Volumn , Issue , 2009, Pages 188-207

Molecular tools for analysing nematode assemblages

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84858150543     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter
Times cited : (9)

References (86)
  • 1
    • 0000571770 scopus 로고    scopus 로고
    • Relationships among nematodes based on the analysis of 18S rRNA gene sequences: molecular evidence for monophyly of chromadorian and secernentian nematodes
    • Aleshin, V.V., Kedrova, O.S., Milyutina, I.A., Vladychenskaya, N.S. and Petrov, N.B. (1998) Relationships among nematodes based on the analysis of 18S rRNA gene sequences: molecular evidence for monophyly of chromadorian and secernentian nematodes. Russian Journal of Nematology 6, 175-184.
    • (1998) Russian Journal of Nematology , vol.6 , pp. 175-184
    • Aleshin, V.V.1    Kedrova, O.S.2    Milyutina, I.A.3    Vladychenskaya, N.S.4    Petrov, N.B.5
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial-cells without cultivation
    • Amann, R.I., Ludwig, W. and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial-cells without cultivation. Microbiology Reviews 59, 143-169.
    • (1995) Microbiology Reviews , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 4
    • 0036112316 scopus 로고    scopus 로고
    • Soil biodiversity: myth, reality or conning?
    • André, H.M., Ducarme, X., and Lebrun, P. (2002) Soil biodiversity: myth, reality or conning?. Oikos 96, 3-24.
    • (2002) Oikos , vol.96 , pp. 3-24
    • André, H.M.1    Ducarme, X.2    Lebrun, P.3
  • 5
    • 11144291135 scopus 로고    scopus 로고
    • The use of real-time PCR and species-specific primers for the identification and monitoring of Paecilomyces lilacinus
    • Atkins, S.D., Clark, I.M., Pande, S., Hirsh, P.R. and Kerry, B.R. (2005) The use of real-time PCR and species-specific primers for the identification and monitoring of Paecilomyces lilacinus. FEMS Microbiology Ecology 51, 257-264.
    • (2005) FEMS Microbiology Ecology , vol.51 , pp. 257-264
    • Atkins, S.D.1    Clark, I.M.2    Pande, S.3    Hirsh, P.R.4    Kerry, B.R.5
  • 6
    • 0027995162 scopus 로고
    • A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences
    • Avaniss-Aghajani, E., Jones, K., Chapman, D. and Brunk, C. (1994) A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences. Biotechniques 17, 144-149.
    • (1994) Biotechniques , vol.17 , pp. 144-149
    • Avaniss-Aghajani, E.1    Jones, K.2    Chapman, D.3    Brunk, C.4
  • 8
    • 0032982443 scopus 로고    scopus 로고
    • Linkages between plant litter diversity, soil microbial biomass and ecosystem function in temperate grasslands
    • Bardgett, R.D. and Shine, A. (1999) Linkages between plant litter diversity, soil microbial biomass and ecosystem function in temperate grasslands. Soil Biology and Biochemistry 31, 317-321.
    • (1999) Soil Biology and Biochemistry , vol.31 , pp. 317-321
    • Bardgett, R.D.1    Shine, A.2
  • 9
    • 0346306244 scopus 로고    scopus 로고
    • Seasonal distribution of free-living nematodes in the Korsch, a coarse grained submountain carbonate stream in southwest Germany
    • Beier, S. and Traunspurger, W. (2003) Seasonal distribution of free-living nematodes in the Korsch, a coarse grained submountain carbonate stream in southwest Germany. Nematology 5, 481-504.
    • (2003) Nematology , vol.5 , pp. 481-504
    • Beier, S.1    Traunspurger, W.2
  • 12
    • 0036205504 scopus 로고    scopus 로고
    • Molecular prospecting for cryptic species of nematodes: mitochondrial DNA versus internal transcribed spacer
    • Blouin, M.S. (2002) Molecular prospecting for cryptic species of nematodes: mitochondrial DNA versus internal transcribed spacer. International Journal for Parasitology 32, 527-531.
    • (2002) International Journal for Parasitology , vol.32 , pp. 527-531
    • Blouin, M.S.1
  • 13
    • 0012377566 scopus 로고
    • Nematode sampling and prediction
    • Boag, B., Neilson, R. and Brown, D.J.F. (1992) Nematode sampling and prediction. Nematologica 38, 459-465.
    • (1992) Nematologica , vol.38 , pp. 459-465
    • Boag, B.1    Neilson, R.2    Brown, D.J.F.3
  • 14
    • 0012378690 scopus 로고    scopus 로고
    • Observations on the effect of different management regimes of set-aside land on nematode community structure
    • Boag, B., Hebden, P.M., Neilson, R. and Rodger, S.J. (1998) Observations on the effect of different management regimes of set-aside land on nematode community structure. Applied Soil Ecology 9, 339-343.
    • (1998) Applied Soil Ecology , vol.9 , pp. 339-343
    • Boag, B.1    Hebden, P.M.2    Neilson, R.3    Rodger, S.J.4
  • 15
    • 0001670956 scopus 로고    scopus 로고
    • Functional diversity of nematodes
    • Bongers, T. and Bongers, M. (1998) Functional diversity of nematodes. Applied Soil Ecology 10, 239-251.
    • (1998) Applied Soil Ecology , vol.10 , pp. 239-251
    • Bongers, T.1    Bongers, M.2
  • 16
    • 0001772214 scopus 로고
    • An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples
    • Brown, D.J.F. and Boag, B. (1988) An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples. Nematologia Mediterranea 16, 93-99.
    • (1988) Nematologia Mediterranea , vol.16 , pp. 93-99
    • Brown, D.J.F.1    Boag, B.2
  • 17
    • 7944231129 scopus 로고    scopus 로고
    • Quantitation of porcine circovirus type 2 isolated from serum/plasma and tissue samples of healthy pigs and pigs with postweaning multisystemic wasting syndrome using a TaqMan-based real-time PCR
    • Brunborg I.M., Moldal, T. and Jonassen, C.M. (2004) Quantitation of porcine circovirus type 2 isolated from serum/plasma and tissue samples of healthy pigs and pigs with postweaning multisystemic wasting syndrome using a TaqMan-based real-time PCR. Journal of Virology Methods 122, 171-178.
    • (2004) Journal of Virology Methods , vol.122 , pp. 171-178
    • Brunborg, I.M.1    Moldal, T.2    Jonassen, C.M.3
  • 18
    • 0038315527 scopus 로고    scopus 로고
    • A rapid microtitre plate method to measure carbon dioxide evolved from carbon substrate amendments as to determine the physiological profiles of soil microbial communities by using whole soil
    • Campbell, C.D., Chapman, S.J., Cameron, C.M., Davidson, M.S. and Potts, J.M. (2003) A rapid microtitre plate method to measure carbon dioxide evolved from carbon substrate amendments as to determine the physiological profiles of soil microbial communities by using whole soil. Applied and Environmental Microbiology 69, 3593-3599.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 3593-3599
    • Campbell, C.D.1    Chapman, S.J.2    Cameron, C.M.3    Davidson, M.S.4    Potts, J.M.5
  • 20
    • 0033012295 scopus 로고    scopus 로고
    • Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil
    • Chin, K.J., Lukow, T. and Conrad, R. (1999) Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil. Applied and Environmental Microbiology 65, 2341-2349.
    • (1999) Applied and Environmental Microbiology , vol.65 , pp. 2341-2349
    • Chin, K.J.1    Lukow, T.2    Conrad, R.3
  • 21
    • 0036421916 scopus 로고    scopus 로고
    • Present status and future of nematode systematics
    • Coomans, A. (2002) Present status and future of nematode systematics. Nematology 4, 573-582.
    • (2002) Nematology , vol.4 , pp. 573-582
    • Coomans, A.1
  • 22
    • 22044432865 scopus 로고    scopus 로고
    • Protistan diversity estimates based on 18S rDNA from seawater incubations in the western North Atlantic
    • Countway, P.D., Gast, R.J., Savai, P. and Caron, D.A. (2005) Protistan diversity estimates based on 18S rDNA from seawater incubations in the western North Atlantic. Journal of Eukaryotic Microbiology 52, 95-106.
    • (2005) Journal of Eukaryotic Microbiology , vol.52 , pp. 95-106
    • Countway, P.D.1    Gast, R.J.2    Savai, P.3    Caron, D.A.4
  • 24
    • 0031239470 scopus 로고    scopus 로고
    • Development of a physiological approach to measuring the catabolic diversity of soil microbial communities
    • Degens, B.P. and Harris, J.A. (1997) Development of a physiological approach to measuring the catabolic diversity of soil microbial communities. Soil Biology and Biochemistry 29, 1309-1320.
    • (1997) Soil Biology and Biochemistry , vol.29 , pp. 1309-1320
    • Degens, B.P.1    Harris, J.A.2
  • 25
    • 0035403492 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques
    • Diez, B., Pedros-Alio, C., Marsh, T.L. and Massana, R., (2001) Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques. Applied and Environmental Microbiology 67, 2942-2951.
    • (2001) Applied and Environmental Microbiology , vol.67 , pp. 2942-2951
    • Diez, B.1    Pedros-Alio, C.2    Marsh, T.L.3    Massana, R.4
  • 26
    • 35548989767 scopus 로고    scopus 로고
    • DNA extraction from soil nematodes for multi-sample community studies
    • Donn, S., Griffiths, B.S., Neilson, R. and Daniell, T.J. (2007) DNA extraction from soil nematodes for multi-sample community studies. Applied Soil Ecology 38, 20-26.
    • (2007) Applied Soil Ecology , vol.38 , pp. 20-26
    • Donn, S.1    Griffiths, B.S.2    Neilson, R.3    Daniell, T.J.4
  • 28
    • 0242513076 scopus 로고    scopus 로고
    • Extraction of ribosomal RNA and genomic DNA from soil for studying the diversity of the indigenous bacterial community
    • Duarte, G.F., Rosado, A.S., Seldin, L., Keijzer-Wolters, A.C. and Van Elsas, J.D. (1998) Extraction of ribosomal RNA and genomic DNA from soil for studying the diversity of the indigenous bacterial community. Journal of Microbiological Methods 32, 21-29.
    • (1998) Journal of Microbiological Methods , vol.32 , pp. 21-29
    • Duarte, G.F.1    Rosado, A.S.2    Seldin, L.3    Keijzer-Wolters, A.C.4    Van Elsas, J.D.5
  • 29
    • 0036010841 scopus 로고    scopus 로고
    • Molecular barcodes for soil nematode identification
    • Floyd, R., Abebe, E., Papert, A. and Blaxter, M. (2002) Molecular barcodes for soil nematode identification. Molecular Ecology 11, 839-850.
    • (2002) Molecular Ecology , vol.11 , pp. 839-850
    • Floyd, R.1    Abebe, E.2    Papert, A.3    Blaxter, M.4
  • 30
    • 0036213539 scopus 로고    scopus 로고
    • Development of a polymerase chain reaction-based denaturing gradient gel electrophoresis technique to study nematode species biodiversity using the 18S rDNA gene
    • Foucher, A. and Wilson, M. (2002) Development of a polymerase chain reaction-based denaturing gradient gel electrophoresis technique to study nematode species biodiversity using the 18S rDNA gene. Molecular Ecology Notes 2, 45-48.
    • (2002) Molecular Ecology Notes , vol.2 , pp. 45-48
    • Foucher, A.1    Wilson, M.2
  • 31
    • 5644303122 scopus 로고    scopus 로고
    • Assessment of nematode biodiversity using DGGE of 18S rDNA following extraction of nematodes from soil
    • Foucher, A.L.J.L., Bongers, T., Noble, L.R. and Wilson, M.J. (2004) Assessment of nematode biodiversity using DGGE of 18S rDNA following extraction of nematodes from soil. Soil Biology and Biochemistry 36, 2027-2032.
    • (2004) Soil Biology and Biochemistry , vol.36 , pp. 2027-2032
    • Foucher, A.L.J.L.1    Bongers, T.2    Noble, L.R.3    Wilson, M.J.4
  • 32
    • 27944436188 scopus 로고    scopus 로고
    • Diversity of soil mite communities when managing plant communities on set-aside arable land
    • Gormsen, D., Hedlund, K. and Wang, H.F. (2006) Diversity of soil mite communities when managing plant communities on set-aside arable land. Applied Soil Ecology 31, 147-158.
    • (2006) Applied Soil Ecology , vol.31 , pp. 147-158
    • Gormsen, D.1    Hedlund, K.2    Wang, H.F.3
  • 33
    • 33646201598 scopus 로고    scopus 로고
    • Molecular sequencing and morphological analysis of a nematode community
    • Griffiths, B.S., Donn, S., Neilson, R. and Daniell, T.J. (2006) Molecular sequencing and morphological analysis of a nematode community. Applied Soil Ecology 32, 325-337.
    • (2006) Applied Soil Ecology , vol.32 , pp. 325-337
    • Griffiths, B.S.1    Donn, S.2    Neilson, R.3    Daniell, T.J.4
  • 34
    • 0034852663 scopus 로고    scopus 로고
    • Biomonitoring of continuous microbial community adaptation towards more efficient phenol-degradation in a fedbatch bioreactor
    • Guieysse, B., Wikstrom, P., Forsman, M. and Mattiasson, B. (2001) Biomonitoring of continuous microbial community adaptation towards more efficient phenol-degradation in a fedbatch bioreactor. Applied Microbiology and Biotechnology 56, 780-787.
    • (2001) Applied Microbiology and Biotechnology , vol.56 , pp. 780-787
    • Guieysse, B.1    Wikstrom, P.2    Forsman, M.3    Mattiasson, B.4
  • 37
    • 47749102879 scopus 로고    scopus 로고
    • Small subunit ribosomal DNA-based phylogeny of basal Chromadoria (Nematoda) suggests that transitions from marine to terrestrial habitats (and vice versa) require relatively simple adaptations
    • Holterman, M.H.M., Holovachov, O., Elsen, S.J.J., Van den Megen, H.H.B., Bongers, A.M.T., Bakker, J. and Helder, J. (2008b) Small subunit ribosomal DNA-based phylogeny of basal Chromadoria (Nematoda) suggests that transitions from marine to terrestrial habitats (and vice versa) require relatively simple adaptations. Molecular Phylogenetics and Evolution 48, 758-763.
    • (2008) Molecular Phylogenetics and Evolution , vol.48 , pp. 758-763
    • Holterman, M.H.M.1    Holovachov, O.2    Elsen, S.J.J.3    Van den Megen, H.H.B.4    Bongers, A.M.T.5    Bakker, J.6    Helder, J.7
  • 39
    • 34248152283 scopus 로고    scopus 로고
    • Long-term ecological impacts of antibiotic administration on the human intestinal microbiota
    • Jernberg, C., Lofmark, S., Edlund, C. and Jansson, J.K. (2007) Long-term ecological impacts of antibiotic administration on the human intestinal microbiota. Isme Journal 1, 56-66.
    • (2007) Isme Journal , vol.1 , pp. 56-66
    • Jernberg, C.1    Lofmark, S.2    Edlund, C.3    Jansson, J.K.4
  • 40
    • 33745921511 scopus 로고    scopus 로고
    • Molecular approach for assessing responses of microbial-feeding nematodes to burning and chronic nitrogen enrichment in a native grassland
    • Jones, K.L., Todd, T.C., Wall-Beam, J.L., Coolon, J.D., Blair, J.M. and Herman, M.A. (2006) Molecular approach for assessing responses of microbial-feeding nematodes to burning and chronic nitrogen enrichment in a native grassland. Molecular Ecology 15, 2601-2609.
    • (2006) Molecular Ecology , vol.15 , pp. 2601-2609
    • Jones, K.L.1    Todd, T.C.2    Wall-Beam, J.L.3    Coolon, J.D.4    Blair, J.M.5    Herman, M.A.6
  • 41
    • 2942694542 scopus 로고    scopus 로고
    • Wounding earth's fragile skin
    • Kaiser, J. (2004) Wounding earth's fragile skin. Science 304, 1616-1618.
    • (2004) Science , vol.304 , pp. 1616-1618
    • Kaiser, J.1
  • 42
    • 1942443842 scopus 로고    scopus 로고
    • Community analysis of methanogenic Archaea within a riparian flooding gradient
    • Kemnitz, D., Chin, K.J., Bodelier, P. and Conrad, R. (2004) Community analysis of methanogenic Archaea within a riparian flooding gradient. Environmental Microbiology 6, 449-461.
    • (2004) Environmental Microbiology , vol.6 , pp. 449-461
    • Kemnitz, D.1    Chin, K.J.2    Bodelier, P.3    Conrad, R.4
  • 43
    • 0035040382 scopus 로고    scopus 로고
    • Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics
    • Kitts, C.L. (2001) Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics. Current Issues Intestinal Microbiology 2, 17-25.
    • (2001) Current Issues Intestinal Microbiology , vol.2 , pp. 17-25
    • Kitts, C.L.1
  • 44
    • 0030616387 scopus 로고    scopus 로고
    • An active bioindication method for the diagnosis of soil properties using Collembola
    • Kopeszki, H. (1997) An active bioindication method for the diagnosis of soil properties using Collembola. Pedobiologia 41, 159-166.
    • (1997) Pedobiologia , vol.41 , pp. 159-166
    • Kopeszki, H.1
  • 45
    • 0030754258 scopus 로고    scopus 로고
    • Detection and characterization of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18s rDNA
    • Kowalchuk, G.A., Gerards, S. and Woldendorp, J.W. (1997) Detection and characterization of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18s rDNA. Applied and Environmental Microbiology 63, 3858-3865.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 3858-3865
    • Kowalchuk, G.A.1    Gerards, S.2    Woldendorp, J.W.3
  • 46
    • 0036140076 scopus 로고    scopus 로고
    • MELTING, a free tool to compute the melting temperature of nucleic acid duplex
    • Le Novère, N. (2001) MELTING, a free tool to compute the melting temperature of nucleic acid duplex. Bioinformatics 17, 1226-1227.
    • (2001) Bioinformatics , vol.17 , pp. 1226-1227
    • Le Novère, N.1
  • 47
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W.T., Marsh, T.L., Cheng, H. and Forney, L.J. (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 63, 4516-4522.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 49
    • 0033152351 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism (T-RFLP): an emerging method for characterizing diversity among homologous populations of amplification products
    • Marsh, T.L. (1999) Terminal restriction fragment length polymorphism (T-RFLP): an emerging method for characterizing diversity among homologous populations of amplification products. Current Opinions in Microbiology 2, 323-327.
    • (1999) Current Opinions in Microbiology , vol.2 , pp. 323-327
    • Marsh, T.L.1
  • 50
    • 0031860407 scopus 로고    scopus 로고
    • Beginning a molecular analysis of the eukaryal community in activated sludge
    • Marsh, T.L., Liu, W.T., Forney, L.J. and Cheng, H. (1998) Beginning a molecular analysis of the eukaryal community in activated sludge. Water Science and Technology 37, 455-460.
    • (1998) Water Science and Technology , vol.37 , pp. 455-460
    • Marsh, T.L.1    Liu, W.T.2    Forney, L.J.3    Cheng, H.4
  • 51
    • 0033868092 scopus 로고    scopus 로고
    • Terminal restriction length polymorphism analysis program, a web based tool for microbial community analysis
    • Marsh, T.L., Saxman, P., Cole, J. and Tiedje, J. (2000) Terminal restriction length polymorphism analysis program, a web based tool for microbial community analysis. Applied and Environmental Microbiology 66, 3616-3620.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 3616-3620
    • Marsh, T.L.1    Saxman, P.2    Cole, J.3    Tiedje, J.4
  • 52
    • 22844436129 scopus 로고    scopus 로고
    • Identification of mosquito bloodmeal source by terminal restriction fragment length polymorphism profile analysis of the cytochrome B gene
    • Meece, J.K., Reynolds, C.E., Stockwell, P.J., Jenson, T.A., Christensen, J.E. and Reed, K.D. (2005) Identification of mosquito bloodmeal source by terminal restriction fragment length polymorphism profile analysis of the cytochrome B gene. Journal of Medical Entomology 42, 657-667.
    • (2005) Journal of Medical Entomology , vol.42 , pp. 657-667
    • Meece, J.K.1    Reynolds, C.E.2    Stockwell, P.J.3    Jenson, T.A.4    Christensen, J.E.5    Reed, K.D.6
  • 54
    • 0000028316 scopus 로고
    • Ribosomal RNA in vertebrates: evolution and phylogenetic applications
    • Mindell, D.P. and Honeycutt, R.L. (1990) Ribosomal RNA in vertebrates: evolution and phylogenetic applications. Annual Review of Ecology and Systematics 21, 541-566.
    • (1990) Annual Review of Ecology and Systematics , vol.21 , pp. 541-566
    • Mindell, D.P.1    Honeycutt, R.L.2
  • 55
    • 0032812081 scopus 로고    scopus 로고
    • Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
    • Moeseneder, M.M., Arrieta, J.M., Muyzer, G., Winter, C. and Herndl, G.J. (1999) Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 65, 3518-3525.
    • (1999) Applied and Environmental Microbiology , vol.65 , pp. 3518-3525
    • Moeseneder, M.M.1    Arrieta, J.M.2    Muyzer, G.3    Winter, C.4    Herndl, G.J.5
  • 56
    • 0035283902 scopus 로고    scopus 로고
    • Terminal restriction length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes
    • Moeseneder, M.M., Winter, C., Arrieta, J.M. and Herndl, G.J. (2001) Terminal restriction length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes. Journal of Microbiological Methods 4, 159-172.
    • (2001) Journal of Microbiological Methods , vol.4 , pp. 159-172
    • Moeseneder, M.M.1    Winter, C.2    Arrieta, J.M.3    Herndl, G.J.4
  • 57
    • 0347297590 scopus 로고    scopus 로고
    • Application of new primer-enzyme combinations to terminal restriction fragment length polymorphism profiling of bacterial populations in human faeces
    • Nagashima, K., Hisada, T., Sato, M. and Mochizuki, J. (2003) Application of new primer-enzyme combinations to terminal restriction fragment length polymorphism profiling of bacterial populations in human faeces. Applied and Environmental Microbiology 69, 1251-1262.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 1251-1262
    • Nagashima, K.1    Hisada, T.2    Sato, M.3    Mochizuki, J.4
  • 58
    • 0035528326 scopus 로고    scopus 로고
    • Role of nematodes in soil health and their use as indicators
    • Neher, D.A. (2001) Role of nematodes in soil health and their use as indicators. Journal of Nematology 33, 161-168.
    • (2001) Journal of Nematology , vol.33 , pp. 161-168
    • Neher, D.A.1
  • 59
    • 32044431649 scopus 로고    scopus 로고
    • Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques
    • Nunan, N., Daniell, T.J., Singh, B.K., Papert, A., McNicol, J.W. and Prosser, J.I. (2005) Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques. Applied and Environmental Microbiology 71, 6784-6792.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 6784-6792
    • Nunan, N.1    Daniell, T.J.2    Singh, B.K.3    Papert, A.4    McNicol, J.W.5    Prosser, J.I.6
  • 60
    • 0034547801 scopus 로고    scopus 로고
    • An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
    • Osborn, A.M., Moore, E.R.B. and Timmis, K.N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology 2, 39-50.
    • (2000) Environmental Microbiology , vol.2 , pp. 39-50
    • Osborn, A.M.1    Moore, E.R.B.2    Timmis, K.N.3
  • 61
    • 33144466522 scopus 로고    scopus 로고
    • New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities
    • Osborne, C.A., Rees, G.N., Bernstein, Y. and Janssen, P.H. (2006) New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities. Applied and Environmental Microbiology 72, 1270-1278.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 1270-1278
    • Osborne, C.A.1    Rees, G.N.2    Bernstein, Y.3    Janssen, P.H.4
  • 62
    • 4744354028 scopus 로고    scopus 로고
    • Nematode molecular diagnostics: from bands to barcodes
    • Powers, T. (2004) Nematode molecular diagnostics: from bands to barcodes. Annual Review of Phytopathology 42, 367-383.
    • (2004) Annual Review of Phytopathology , vol.42 , pp. 367-383
    • Powers, T.1
  • 63
    • 21144470290 scopus 로고
    • A polymerase chain-reaction method for identification of 5 major Meloidogyne species
    • Powers, T.O. and Harris, T.S. (1993) A polymerase chain-reaction method for identification of 5 major Meloidogyne species. Journal of Nematology 25, 1-6.
    • (1993) Journal of Nematology , vol.25 , pp. 1-6
    • Powers, T.O.1    Harris, T.S.2
  • 64
    • 0032742227 scopus 로고    scopus 로고
    • Utility of nematode community analysis as an integrated measure of the functional state of soils: perspectives and challenges
    • Ritz, K. and Trudgill, D.L. (1999) Utility of nematode community analysis as an integrated measure of the functional state of soils: perspectives and challenges. Plant and Soil 212, 1-11.
    • (1999) Plant and Soil , vol.212 , pp. 1-11
    • Ritz, K.1    Trudgill, D.L.2
  • 65
    • 0023629714 scopus 로고
    • Survival strategies of bacteria in the natural environment
    • Rozsak, D.B. and Colwell, R.R. (1987) Survival strategies of bacteria in the natural environment. Microbiology Review 51, 365-379.
    • (1987) Microbiology Review , vol.51 , pp. 365-379
    • Rozsak, D.B.1    Colwell, R.R.2
  • 66
    • 0348196968 scopus 로고    scopus 로고
    • The 18S ribosomal RNA gene of Soboliphyme baturini Petrow, 1930 (Nematoda: Dioctophymida) and its implications for phylogenetic relationships within Dorylaimia
    • Rusin, L.Y., Aleshin, V.V., Tchesunov, A.V. and Atrashkevich, G.I. (2003) The 18S ribosomal RNA gene of Soboliphyme baturini Petrow, 1930 (Nematoda: Dioctophymida) and its implications for phylogenetic relationships within Dorylaimia. Nematology 5, 615-628.
    • (2003) Nematology , vol.5 , pp. 615-628
    • Rusin, L.Y.1    Aleshin, V.V.2    Tchesunov, A.V.3    Atrashkevich, G.I.4
  • 67
    • 3042585896 scopus 로고    scopus 로고
    • Changes in oral microbial profiles after periodontal treatment as determined by molecular analysis of 16S rRNA genes
    • Sakamoto, M., Huang, Y., Ohnishi, M., Umeda, M., Ishikawa, I. and Benno, Y. (2004) Changes in oral microbial profiles after periodontal treatment as determined by molecular analysis of 16S rRNA genes. Journal of Medical Microbiology 53, 563-571.
    • (2004) Journal of Medical Microbiology , vol.53 , pp. 563-571
    • Sakamoto, M.1    Huang, Y.2    Ohnishi, M.3    Umeda, M.4    Ishikawa, I.5    Benno, Y.6
  • 68
    • 7444222279 scopus 로고    scopus 로고
    • Identification of rice root associated nitrate, sulphate and ferric iron reducing bacteria during root decomposition
    • Scheid, D., Stubner, S. and Conrad, R. (2004) Identification of rice root associated nitrate, sulphate and ferric iron reducing bacteria during root decomposition. FEMS Microbiology Ecology 50, 101-110.
    • (2004) FEMS Microbiology Ecology , vol.50 , pp. 101-110
    • Scheid, D.1    Stubner, S.2    Conrad, R.3
  • 70
    • 0030805071 scopus 로고    scopus 로고
    • Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis
    • Smit, E., Leeflang, P. and Wernars, K. (1997) Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis. FEMS Microbiology Ecology 23, 249-261.
    • (1997) FEMS Microbiology Ecology , vol.23 , pp. 249-261
    • Smit, E.1    Leeflang, P.2    Wernars, K.3
  • 71
    • 0033014645 scopus 로고    scopus 로고
    • Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encodMolecular ing 18S rRNA and temperature gradient gel electrophoresis
    • Smit, E., Leeflang, P., Glandorf, B., Van Elsas, J.D. and Wernars K. (1999) Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encodMolecular ing 18S rRNA and temperature gradient gel electrophoresis. Applied and Environmental Microbiology 65, 2614-2621.
    • (1999) Applied and Environmental Microbiology , vol.65 , pp. 2614-2621
    • Smit, E.1    Leeflang, P.2    Glandorf, B.3    Van Elsas, J.D.4    Wernars, K.5
  • 72
    • 27744452625 scopus 로고    scopus 로고
    • A survey of the methods for the characterization of microbial consortia and communities
    • Spiegelman, D., Whissell, G. and Greer, C.W. (2005) A survey of the methods for the characterization of microbial consortia and communities. Canadian Journal of Microbiology 51, 355-386.
    • (2005) Canadian Journal of Microbiology , vol.51 , pp. 355-386
    • Spiegelman, D.1    Whissell, G.2    Greer, C.W.3
  • 73
    • 0032339149 scopus 로고    scopus 로고
    • Non-manual lysis of second-stage Meloidogyne juveniles for identification of pure and mixed samples based on the polymerase chain reaction
    • Stanton, J.M., McNicol, C.D. and Steele, V. (1998) Non-manual lysis of second-stage Meloidogyne juveniles for identification of pure and mixed samples based on the polymerase chain reaction. Australian Journal of Plant Pathology 27, 112-115.
    • (1998) Australian Journal of Plant Pathology , vol.27 , pp. 112-115
    • Stanton, J.M.1    McNicol, C.D.2    Steele, V.3
  • 75
    • 0036566806 scopus 로고    scopus 로고
    • Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'
    • Thompson, J.R., Marcelino, L.A. and Polz, M.F. (2002) Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. Nucleic Acids Research 30, 2083-2088.
    • (2002) Nucleic Acids Research , vol.30 , pp. 2083-2088
    • Thompson, J.R.1    Marcelino, L.A.2    Polz, M.F.3
  • 77
    • 0000071271 scopus 로고    scopus 로고
    • Evaluation of bioindicator systems derived from soil arthropod communities
    • Van Straalen, N.M., (1998) Evaluation of bioindicator systems derived from soil arthropod communities. Applied Soil Ecology 9, 429-437.
    • (1998) Applied Soil Ecology , vol.9 , pp. 429-437
    • Van Straalen, N.M.1
  • 80
    • 0027074009 scopus 로고
    • Geostatistical analysis of cyst nematodes in soil
    • Webster, R. and Boag, B. (1992) Geostatistical analysis of cyst nematodes in soil. Journal of Soil Science 43, 583-595.
    • (1992) Journal of Soil Science , vol.43 , pp. 583-595
    • Webster, R.1    Boag, B.2
  • 81
    • 0001174916 scopus 로고    scopus 로고
    • The suitability of the Biolog Automated Microbial Identification System for assessing the taxonomical composition of terrestrial bacterial communities
    • Wünsche, L. and Babel, W. (1996) The suitability of the Biolog Automated Microbial Identification System for assessing the taxonomical composition of terrestrial bacterial communities. Microbiological Research 151, 133-143.
    • (1996) Microbiological Research , vol.151 , pp. 133-143
    • Wünsche, L.1    Babel, W.2
  • 82
    • 0038368776 scopus 로고    scopus 로고
    • Nematodes as soil indicators: functional and biodiversity aspects
    • Yeates, G.W. (2003) Nematodes as soil indicators: functional and biodiversity aspects. Biology and Fertility of Soils 37, 199-210.
    • (2003) Biology and Fertility of Soils , vol.37 , pp. 199-210
    • Yeates, G.W.1
  • 84
    • 0036235133 scopus 로고    scopus 로고
    • Subterranean community structure of ectomycorrhizal fungi under Suillus grevillei sporocarps in a Larix kaempferi forest
    • Zhou, Z.H. and Hogetsu, T. (2002) Subterranean community structure of ectomycorrhizal fungi under Suillus grevillei sporocarps in a Larix kaempferi forest. New Phytologist 154, 529-539.
    • (2002) New Phytologist , vol.154 , pp. 529-539
    • Zhou, Z.H.1    Hogetsu, T.2
  • 86
    • 34547601738 scopus 로고    scopus 로고
    • Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: toward a high-throughput method for microbial diversity studies in soil
    • Zinger, L., Gury, J., Giraud, F., Krivobok, S., Gielly, L., Taberlet, P. and Geremia, R.A. (2007) Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: toward a high-throughput method for microbial diversity studies in soil. Microbial Ecology 54, 203-216.
    • (2007) Microbial Ecology , vol.54 , pp. 203-216
    • Zinger, L.1    Gury, J.2    Giraud, F.3    Krivobok, S.4    Gielly, L.5    Taberlet, P.6    Geremia, R.A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.