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Volumn 65, Issue 6, 1999, Pages 2341-2349

Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; RNA 16S;

EID: 0033012295     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.65.6.2341-2349.1999     Document Type: Article
Times cited : (217)

References (52)
  • 1
    • 0029529739 scopus 로고
    • Populations of methanogenic bacteria in paddy field soil under double cropping conditions (rice-wheat)
    • Asakawa, S., and K. Hayano. 1995. Populations of methanogenic bacteria in paddy field soil under double cropping conditions (rice-wheat). Biol. Fertil. Soils 20:113-117.
    • (1995) Biol. Fertil. Soils , vol.20 , pp. 113-117
    • Asakawa, S.1    Hayano, K.2
  • 3
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns, S. M., C. F. Delwiche, J. D. Palmer, and N. R. Pace. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93:9188-9193.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 4
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
    • Barns, S. M., R. E. Fundyga, M. W. Jeffries, and N. R. Pace. 1994. Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc. Natl. Acad. Sci. USA 91:1609-1613.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 6
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
    • Brosius, J., M. L. Palmer, P. J. Kennedy, and H. R. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, M.L.2    Kennedy, P.J.3    Noller, H.R.4
  • 7
    • 0031733317 scopus 로고    scopus 로고
    • Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils
    • Buckley, D. H., J. R. Graber, and T. M. Schmidt. 1998. Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils. Appl. Environ. Microbiol. 64:4333-4339.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4333-4339
    • Buckley, D.H.1    Graber, J.R.2    Schmidt, T.M.3
  • 8
    • 0028863159 scopus 로고
    • Intermediary metabolism in methanogenic paddy soil and the influence of temperature
    • Chin, K. J., and R. Conrad. 1995. Intermediary metabolism in methanogenic paddy soil and the influence of temperature. FEMS Microbiol. Ecol. 18:85-102.
    • (1995) FEMS Microbiol. Ecol. , vol.18 , pp. 85-102
    • Chin, K.J.1    Conrad, R.2
  • 9
    • 0031873023 scopus 로고    scopus 로고
    • Methanogenic degradation of polysaccharides and the characterization of polysaccharolytic clostridia from anoxic rice field soil
    • Chin, K. J., F. A. Rainey, P. H. Janssen, and R. Conrad. 1998. Methanogenic degradation of polysaccharides and the characterization of polysaccharolytic clostridia from anoxic rice field soil. Syst. Appl. Microbiol. 21:185-200.
    • (1998) Syst. Appl. Microbiol. , vol.21 , pp. 185-200
    • Chin, K.J.1    Rainey, F.A.2    Janssen, P.H.3    Conrad, R.4
  • 10
    • 0040972300 scopus 로고
    • 2-syntrophic methanogenic bacterial associations
    • T. Hattori, Y. Ishida, Y. Maruyama, R. Y. Morita, and A. Uchida (ed.), Japan Scientific Societies Press, Tokyo, Japan
    • 2-syntrophic methanogenic bacterial associations, p. 118-122. In T. Hattori, Y. Ishida, Y. Maruyama, R. Y. Morita, and A. Uchida (ed.), Recent advances in microbial ecology. Japan Scientific Societies Press, Tokyo, Japan.
    • (1989) Recent Advances in Microbial Ecology , pp. 118-122
    • Conrad, R.1
  • 11
    • 0033050621 scopus 로고    scopus 로고
    • Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soil and sediments. Minireview
    • Conrad, R. 1999. Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soil and sediments. Minireview. FEMS Microbiol. Ecol. 28:569-578.
    • (1999) FEMS Microbiol. Ecol. , vol.28 , pp. 569-578
    • Conrad, R.1
  • 12
    • 0000366160 scopus 로고
    • Temperature limitation of hydrogen turnover and methanogenesis in anoxic paddy soil
    • Conrad, R., H. Schütz, and M. Babbel. 1987. Temperature limitation of hydrogen turnover and methanogenesis in anoxic paddy soil. FEMS Microbiol. Ecol. 45:281-289.
    • (1987) FEMS Microbiol. Ecol. , vol.45 , pp. 281-289
    • Conrad, R.1    Schütz, H.2    Babbel, M.3
  • 13
    • 0024904092 scopus 로고
    • Hydrogen turnover by psychrotrophic homoacetogenic and mesophilic methanogenic bacteria in anoxic paddy soil and lake sediment
    • Conrad, R., F. Bak, H. J. Seitz, B. Thebrath, H. P. Mayer, and H. Schütz. 1989. Hydrogen turnover by psychrotrophic homoacetogenic and mesophilic methanogenic bacteria in anoxic paddy soil and lake sediment. FEMS Microbiol. Ecol. 62:285-294.
    • (1989) FEMS Microbiol. Ecol. , vol.62 , pp. 285-294
    • Conrad, R.1    Bak, F.2    Seitz, H.J.3    Thebrath, B.4    Mayer, H.P.5    Schütz, H.6
  • 14
    • 0024939529 scopus 로고
    • Temporal change of gas metabolism by hydrogen-syntrophic methanogenic bacterial associations in anoxic paddy soil
    • Conrad, R., H. P. Mayer, and M. Wüst, 1989. Temporal change of gas metabolism by hydrogen-syntrophic methanogenic bacterial associations in anoxic paddy soil. FEMS Microbiol. Ecol. 62:265-274.
    • (1989) FEMS Microbiol. Ecol. , vol.62 , pp. 265-274
    • Conrad, R.1    Mayer, H.P.2    Wüst, M.3
  • 15
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 16
    • 0027337079 scopus 로고
    • Sensitivity of methanogenic bacteria from paddy soil to oxygen and desiccation
    • Fetzer, S., F. Bak, and R. Conrad. 1993. Sensitivity of methanogenic bacteria from paddy soil to oxygen and desiccation. FEMS Microbiol. Ecol. 12:107-115.
    • (1993) FEMS Microbiol. Ecol. , vol.12 , pp. 107-115
    • Fetzer, S.1    Bak, F.2    Conrad, R.3
  • 17
    • 2542508293 scopus 로고    scopus 로고
    • Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval
    • Großkopf, R., P. H. Janssen, and W. Liesack. 1998. Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl. Environ. Microbiol. 64:960-969.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 960-969
    • Großkopf, R.1    Janssen, P.H.2    Liesack, W.3
  • 18
    • 0040336333 scopus 로고    scopus 로고
    • Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
    • Großkopf, R., S. Stubner, and W. Liesack. 1998. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl. Environ. Microbiol. 64:4983-4989.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4983-4989
    • Großkopf, R.1    Stubner, S.2    Liesack, W.3
  • 19
    • 0001665113 scopus 로고
    • Methane emission during a cultivation period from an Italian rice paddy
    • Holzapfel-Pschorn, A., and W. Seiler. 1986. Methane emission during a cultivation period from an Italian rice paddy. J. Geophys. Res. 91:11803-11814.
    • (1986) J. Geophys. Res. , vol.91 , pp. 11803-11814
    • Holzapfel-Pschorn, A.1    Seiler, W.2
  • 20
    • 0026780594 scopus 로고
    • Methanogenesis from acetate - A comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp
    • Jetten, M. S. M., A. J. M. Stams, and A. J. B. Zehnder. 1992. Methanogenesis from acetate - a comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp. FEMS Microbiol. Rev. 88:181-197.
    • (1992) FEMS Microbiol. Rev. , vol.88 , pp. 181-197
    • Jetten, M.S.M.1    Stams, A.J.M.2    Zehnder, A.J.B.3
  • 21
    • 0030894624 scopus 로고    scopus 로고
    • Novel group within the kingdom Crenarchaeota from boreal forest soil
    • Jurgens, G., K. Lindström, and A. Saano. 1997. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl. Environ. Microbiol. 63:803-805.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 803-805
    • Jurgens, G.1    Lindström, K.2    Saano, A.3
  • 22
    • 0028082207 scopus 로고
    • Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms
    • Kopczynski, E. D., M. M. Bateson, and D. M. Ward. 1994. Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl. Environ. Microbiol. 60:746-748.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 746-748
    • Kopczynski, E.D.1    Bateson, M.M.2    Ward, D.M.3
  • 23
    • 0025921746 scopus 로고
    • Metabolism of position-labelled glucose in anoxic methanogenic paddy soil and lake sediment
    • Krumböck, M., and R. Conrad. 1991. Metabolism of position-labelled glucose in anoxic methanogenic paddy soil and lake sediment. FEMS Microbiol. Ecol. 85:247-256.
    • (1991) FEMS Microbiol. Ecol. , vol.85 , pp. 247-256
    • Krumböck, M.1    Conrad, R.2
  • 24
  • 26
    • 51249171800 scopus 로고
    • Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria
    • Liesack, W., H. Weyland, and E. Stackebrandt. 1991. Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria. Microb. Ecol. 21:191-198.
    • (1991) Microb. Ecol. , vol.21 , pp. 191-198
    • Liesack, W.1    Weyland, H.2    Stackebrandt, E.3
  • 27
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W.-T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.-T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 29
    • 0025198352 scopus 로고
    • Factors influencing the population of methanogenic bacteria and the initiation of methane production upon flooding of paddy soil
    • Mayer, H. P., and R. Conrad. 1990. Factors influencing the population of methanogenic bacteria and the initiation of methane production upon flooding of paddy soil. FEMS Microbiol. Ecol. 73:103-112.
    • (1990) FEMS Microbiol. Ecol. , vol.73 , pp. 103-112
    • Mayer, H.P.1    Conrad, R.2
  • 30
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nübel, U., B. Engelen, A. Felske, J. Snaidr, A. Wieshuber, R. I. Amann, W. Ludwig, and H. Backhaus. 1996. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178:5636-5643.
    • (1996) J. Bacteriol. , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 32
    • 0027059450 scopus 로고
    • 4 production in a flooded Italian rice field
    • 4 production in a flooded Italian rice field. Biogeochemistry 18:137-152.
    • (1993) Biogeochemistry , vol.18 , pp. 137-152
    • Rothfuss, F.1    Conrad, R.2
  • 33
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia mono-oxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe, J. H., K.-P. Witzel, and W. Liesack. 1997. The ammonia mono-oxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63:4704-4712.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4704-4712
    • Rotthauwe, J.H.1    Witzel, K.-P.2    Liesack, W.3
  • 35
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. 4:406-425.
    • (1987) Mol. Biol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 36
    • 0031657332 scopus 로고    scopus 로고
    • High genetic and physiological diversity of sulfate-reducing bacteria isolated from an oligotrophic lake sediment
    • Sass, H., E. Wieringa, H. Cypionka, H. D. Babenzien, and J. Overmann. 1998. High genetic and physiological diversity of sulfate-reducing bacteria isolated from an oligotrophic lake sediment. Arch. Microbiol. 170:243-251.
    • (1998) Arch. Microbiol. , vol.170 , pp. 243-251
    • Sass, H.1    Wieringa, E.2    Cypionka, H.3    Babenzien, H.D.4    Overmann, J.5
  • 37
    • 0029659727 scopus 로고    scopus 로고
    • Influence of temperature on pathways to methane production in the permanently cold profundal sediment of Lake Constance
    • Schulz, S., and R. Conrad. 1996. Influence of temperature on pathways to methane production in the permanently cold profundal sediment of Lake Constance. FEMS Microbiol. Ecol. 20:1-14.
    • (1996) FEMS Microbiol. Ecol. , vol.20 , pp. 1-14
    • Schulz, S.1    Conrad, R.2
  • 38
    • 0031105939 scopus 로고    scopus 로고
    • Temperature dependence of methane production from different precursors in a profundal sediment (Lake Constance)
    • Schulz, S., H. Matsuyama, and R. Conrad. 1997. Temperature dependence of methane production from different precursors in a profundal sediment (Lake Constance). FEMS Microbiol. Ecol. 22:207-213.
    • (1997) FEMS Microbiol. Ecol. , vol.22 , pp. 207-213
    • Schulz, S.1    Matsuyama, H.2    Conrad, R.3
  • 39
    • 0024485037 scopus 로고
    • Processes involved in formation and emission of methane in rice paddies
    • Schütz, H., W. Seiler, and R. Conrad. 1989. Processes involved in formation and emission of methane in rice paddies. Biogeochemistry 7:33-53.
    • (1989) Biogeochemistry , vol.7 , pp. 33-53
    • Schütz, H.1    Seiler, W.2    Conrad, R.3
  • 40
    • 0025634764 scopus 로고
    • Influence of soil temperature on methane emission from rice paddy fields
    • Schütz, H., W. Seiler, and R. Conrad. 1990. Influence of soil temperature on methane emission from rice paddy fields. Biogeochemistry 11:77-95.
    • (1990) Biogeochemistry , vol.11 , pp. 77-95
    • Schütz, H.1    Seiler, W.2    Conrad, R.3
  • 41
    • 0031719182 scopus 로고    scopus 로고
    • Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis
    • Sekiguchi, Y., Y. Kamagata, K. Syutsubo, A. Ohashi, H. Harada, and K. Nakamura. 1998. Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis. Microbiology (Reading) 144:2655-2665.
    • (1998) Microbiology (Reading) , vol.144 , pp. 2655-2665
    • Sekiguchi, Y.1    Kamagata, Y.2    Syutsubo, K.3    Ohashi, A.4    Harada, H.5    Nakamura, K.6
  • 43
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 44
    • 0028575652 scopus 로고
    • Metabolic interactions between anaerobic bacteria in methanogenic environments
    • Stams, A. J. M. 1994. Metabolic interactions between anaerobic bacteria in methanogenic environments. Antonie Leeuwenhoek 66:271-294.
    • (1994) Antonie Leeuwenhoek , vol.66 , pp. 271-294
    • Stams, A.J.M.1
  • 45
    • 0003449416 scopus 로고    scopus 로고
    • April revision date. [Online.] Technische Universität München, Germany. 23 April last date accessed
    • Strunk, O., and W. Ludwig. April 1998, revision date. [Online.] ARB: a software environment for sequence data, http://www.biol.chemie.tumuenchen.de/pub/ARB/. Technische Universität München, Germany. [23 April 1999, last date accessed.]
    • (1998) ARB: A Software Environment for Sequence Data
    • Strunk, O.1    Ludwig, W.2
  • 46
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 47
    • 0026522309 scopus 로고
    • Bicarbonate-dependent production and methanogenic consumption of acetate in anoxic paddy soil
    • Thebrath, B., H. P. Mayer, and R. Conrad. 1992. Bicarbonate-dependent production and methanogenic consumption of acetate in anoxic paddy soil. FEMS Microbiol. Ecol. 86:295-302.
    • (1992) FEMS Microbiol. Ecol. , vol.86 , pp. 295-302
    • Thebrath, B.1    Mayer, H.P.2    Conrad, R.3
  • 49
    • 0029972052 scopus 로고    scopus 로고
    • The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species
    • Wang, G. C. Y., and Y. Wang. 1996. The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species. Microbiology (Reading) 142:1107-1114.
    • (1996) Microbiology (Reading) , vol.142 , pp. 1107-1114
    • Wang, G.C.Y.1    Wang, Y.2
  • 50
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese, C. R., O. Kandler, and M. L. Wheelis. 1990. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87:4576-4579.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 51
    • 84895271594 scopus 로고
    • Effect of temperature on the decomposition of organic substances in flooded soil
    • Yamane, I., and K. Sato. 1967. Effect of temperature on the decomposition of organic substances in flooded soil. Soil Sci. Plant Nutr. 13:94-100.
    • (1967) Soil Sci. Plant Nutr. , vol.13 , pp. 94-100
    • Yamane, I.1    Sato, K.2
  • 52
    • 0000253782 scopus 로고
    • Physiological ecology of methanogens
    • J. G. Ferry (ed.), Chapman & Hall, New York, N.Y.
    • Zinder, S. H. 1993. Physiological ecology of methanogens, p. 128-206. In J. G. Ferry (ed.), Methanogenesis: ecology, physiology, biochemistry & genetics. Chapman & Hall, New York, N.Y.
    • (1993) Methanogenesis: Ecology, Physiology, Biochemistry & Genetics , pp. 128-206
    • Zinder, S.H.1


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