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Volumn 38, Issue 1, 2008, Pages 20-26

DNA extraction from soil nematodes for multi-sample community studies

Author keywords

Community analysis; DNA extraction; Nematodes; Soil ecology; Soil monitoring; T RFLP

Indexed keywords

NEMATODA;

EID: 35548989767     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2007.08.006     Document Type: Article
Times cited : (49)

References (32)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation
    • Amann R.I., Ludwig W., and Schleifer K.H. Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation. Microbiol. Rev. 59 (1995) 143-169
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 2
    • 0036112316 scopus 로고    scopus 로고
    • Soil biodiversity: myth, reality or conning?
    • André H.M., Ducarme X., and Lebrun P. Soil biodiversity: myth, reality or conning?. Oikos 96 (2002) 3-24
    • (2002) Oikos , vol.96 , pp. 3-24
    • André, H.M.1    Ducarme, X.2    Lebrun, P.3
  • 4
    • 0036205504 scopus 로고    scopus 로고
    • Molecular prospecting for cryptic species of nematodes: mitochondrial DNA versus internal transcribed spacer
    • Blouin M.S. Molecular prospecting for cryptic species of nematodes: mitochondrial DNA versus internal transcribed spacer. Int. J. Parasitol. 32 (2002) 527-531
    • (2002) Int. J. Parasitol. , vol.32 , pp. 527-531
    • Blouin, M.S.1
  • 5
  • 6
    • 0012378690 scopus 로고    scopus 로고
    • Observations on the effect of different management regimes of set-aside land on nematode community structure
    • Boag B., Hebden P.M., Neilson R., and Rodger S.J. Observations on the effect of different management regimes of set-aside land on nematode community structure. Appl. Soil Ecol. 9 (1998) 339-343
    • (1998) Appl. Soil Ecol. , vol.9 , pp. 339-343
    • Boag, B.1    Hebden, P.M.2    Neilson, R.3    Rodger, S.J.4
  • 7
    • 0001772214 scopus 로고
    • An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples
    • Brown D.J.F., and Boag B. An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples. Nematol. Mediterr. 16 (1988) 93-99
    • (1988) Nematol. Mediterr. , vol.16 , pp. 93-99
    • Brown, D.J.F.1    Boag, B.2
  • 8
    • 0036421916 scopus 로고    scopus 로고
    • Present status and future of nematode systematics
    • Coomans A. Present status and future of nematode systematics. Nematology 4 (2002) 573-582
    • (2002) Nematology , vol.4 , pp. 573-582
    • Coomans, A.1
  • 9
    • 0242513076 scopus 로고    scopus 로고
    • Extraction of ribosomal RNA and genomic DNA from soil for studying the diversity of the indigenous bacterial community
    • Duarte G.F., Rosado A.S., Seldin L., Keijzer-Wolters A.C., and van Elsas J.D. Extraction of ribosomal RNA and genomic DNA from soil for studying the diversity of the indigenous bacterial community. J. Microbiol. Methods 32 (1998) 21-29
    • (1998) J. Microbiol. Methods , vol.32 , pp. 21-29
    • Duarte, G.F.1    Rosado, A.S.2    Seldin, L.3    Keijzer-Wolters, A.C.4    van Elsas, J.D.5
  • 10
    • 0036010841 scopus 로고    scopus 로고
    • Molecular barcodes for soil nematode identification
    • Floyd R., Abebe E., Papert A., and Blaxter M. Molecular barcodes for soil nematode identification. Mol. Ecol. 11 (2002) 839-850
    • (2002) Mol. Ecol. , vol.11 , pp. 839-850
    • Floyd, R.1    Abebe, E.2    Papert, A.3    Blaxter, M.4
  • 11
    • 0036213539 scopus 로고    scopus 로고
    • Development of a polymerase chain reaction-based genaturing gradient gel electrophoresis technique to study nematode species biodiversity using the 18S rDNA gene
    • Foucher A., and Wilson M. Development of a polymerase chain reaction-based genaturing gradient gel electrophoresis technique to study nematode species biodiversity using the 18S rDNA gene. Mol. Ecol. Notes 2 (2002) 45-48
    • (2002) Mol. Ecol. Notes , vol.2 , pp. 45-48
    • Foucher, A.1    Wilson, M.2
  • 12
    • 5644303122 scopus 로고    scopus 로고
    • Assessment of nematode biodiversity using DGGE of 18S rDNA following extraction of nematodes from soil
    • Foucher A.L.J.L., Bongers T., Noble L.R., and Wilson M.J. Assessment of nematode biodiversity using DGGE of 18S rDNA following extraction of nematodes from soil. Soil Biol. Biochem. 36 (2004) 2027-2032
    • (2004) Soil Biol. Biochem. , vol.36 , pp. 2027-2032
    • Foucher, A.L.J.L.1    Bongers, T.2    Noble, L.R.3    Wilson, M.J.4
  • 13
    • 27944436188 scopus 로고    scopus 로고
    • Diversity of soil mite communities when managing plant communities on set-aside arable land
    • Gormsen D., Hedlund K., and Wang H.F. Diversity of soil mite communities when managing plant communities on set-aside arable land. Appl. Soil Ecol. 31 (2006) 147-158
    • (2006) Appl. Soil Ecol. , vol.31 , pp. 147-158
    • Gormsen, D.1    Hedlund, K.2    Wang, H.F.3
  • 14
    • 33646201598 scopus 로고    scopus 로고
    • Molecular sequencing and morphological analysis of a nematode community
    • Griffiths B.S., Donn S., Neilson R., and Daniell T.J. Molecular sequencing and morphological analysis of a nematode community. Appl. Soil Ecol. 32 (2006) 325-337
    • (2006) Appl. Soil Ecol. , vol.32 , pp. 325-337
    • Griffiths, B.S.1    Donn, S.2    Neilson, R.3    Daniell, T.J.4
  • 15
    • 4544247014 scopus 로고    scopus 로고
    • Validation of the specificity and sensitivity of species-specific primers that provide a reliable molecular diagnostic for Xiphinema diversicaudatum, X. index and X. vuittenezi
    • Hübschen J., Kling L., Ipach U., Zinkernagel V., Bosselut N., Esmenjaud D., Brown D.J.F., and Neilson R. Validation of the specificity and sensitivity of species-specific primers that provide a reliable molecular diagnostic for Xiphinema diversicaudatum, X. index and X. vuittenezi. Eur. J. Plant Pathol. 110 (2004) 779-788
    • (2004) Eur. J. Plant Pathol. , vol.110 , pp. 779-788
    • Hübschen, J.1    Kling, L.2    Ipach, U.3    Zinkernagel, V.4    Bosselut, N.5    Esmenjaud, D.6    Brown, D.J.F.7    Neilson, R.8
  • 16
    • 33745921511 scopus 로고    scopus 로고
    • Molecular approach for assessing responses of microbial-feeding nematodes to burning and chronic nitrogen enrichment in a native grassland
    • Jones K.L., Todd T.C., Wall-Beam J.L., Coolon J.D., Blair J.M., and Herman M.A. Molecular approach for assessing responses of microbial-feeding nematodes to burning and chronic nitrogen enrichment in a native grassland. Mol. Ecol. 15 (2006) 2601-2609
    • (2006) Mol. Ecol. , vol.15 , pp. 2601-2609
    • Jones, K.L.1    Todd, T.C.2    Wall-Beam, J.L.3    Coolon, J.D.4    Blair, J.M.5    Herman, M.A.6
  • 17
    • 2942694542 scopus 로고    scopus 로고
    • Wounding earth's fragile skin
    • Kaiser J. Wounding earth's fragile skin. Science 304 (2004) 1616-1618
    • (2004) Science , vol.304 , pp. 1616-1618
    • Kaiser, J.1
  • 18
    • 0030616387 scopus 로고    scopus 로고
    • An active bioindication method for the diagnosis of soil properties using Collembola
    • Kopeszki H. An active bioindication method for the diagnosis of soil properties using Collembola. Pedobiologia 41 (1997) 159-166
    • (1997) Pedobiologia , vol.41 , pp. 159-166
    • Kopeszki, H.1
  • 19
    • 0035528326 scopus 로고    scopus 로고
    • Role of nematodes in soil health and their use as indicators
    • Neher D.A. Role of nematodes in soil health and their use as indicators. J. Nematol. 33 (2001) 161-168
    • (2001) J. Nematol. , vol.33 , pp. 161-168
    • Neher, D.A.1
  • 20
    • 4744354028 scopus 로고    scopus 로고
    • Nematode molecular diagnostics: from bands to barcodes
    • Powers T. Nematode molecular diagnostics: from bands to barcodes. Annu. Rev. Phytopathol. 42 (2004) 367-383
    • (2004) Annu. Rev. Phytopathol. , vol.42 , pp. 367-383
    • Powers, T.1
  • 21
    • 21144470290 scopus 로고
    • A polymerase chain-reaction method for identification of 5 major Meloidogyne species
    • Powers T.O., and Harris T.S. A polymerase chain-reaction method for identification of 5 major Meloidogyne species. J. Nematol. 25 (1993) 1-6
    • (1993) J. Nematol. , vol.25 , pp. 1-6
    • Powers, T.O.1    Harris, T.S.2
  • 22
    • 0032742227 scopus 로고    scopus 로고
    • Utility of nematode community analysis as an integrated measure of the functional state of soils: perspectives and challenges
    • Ritz K., and Trudgill D.L. Utility of nematode community analysis as an integrated measure of the functional state of soils: perspectives and challenges. Plant Soil 212 (1999) 1-11
    • (1999) Plant Soil , vol.212 , pp. 1-11
    • Ritz, K.1    Trudgill, D.L.2
  • 23
    • 0348196968 scopus 로고    scopus 로고
    • The 18S ribosomal RNA gene of Soboliphyme baturini Petrow, 1930 (Nematoda: Dioctophymida) and its implications for phylogenetic relationships within Dorylaimia
    • Rusin L.Y., Aleshin V.V., Tchesunov A.V., and Atrashkevich G.I. The 18S ribosomal RNA gene of Soboliphyme baturini Petrow, 1930 (Nematoda: Dioctophymida) and its implications for phylogenetic relationships within Dorylaimia. Nematology 5 (2003) 615-628
    • (2003) Nematology , vol.5 , pp. 615-628
    • Rusin, L.Y.1    Aleshin, V.V.2    Tchesunov, A.V.3    Atrashkevich, G.I.4
  • 26
    • 0032339149 scopus 로고    scopus 로고
    • Non-manual lysis of second-stage Meloidogyne juveniles for identification of pure and mixed samples based on the polymerase chain reaction
    • Stanton J.M., McNicol C.D., and Steele V. Non-manual lysis of second-stage Meloidogyne juveniles for identification of pure and mixed samples based on the polymerase chain reaction. Aust. Plant Pathol. 27 (1998) 112-115
    • (1998) Aust. Plant Pathol. , vol.27 , pp. 112-115
    • Stanton, J.M.1    McNicol, C.D.2    Steele, V.3
  • 27
    • 0000071271 scopus 로고    scopus 로고
    • Evaluation of bioindicator systems derived from soil arthropod communities
    • van Straalen N.M. Evaluation of bioindicator systems derived from soil arthropod communities. Appl. Soil Ecol. 9 (1998) 429-437
    • (1998) Appl. Soil Ecol. , vol.9 , pp. 429-437
    • van Straalen, N.M.1
  • 28
    • 35548957348 scopus 로고    scopus 로고
    • Van-Camp, L., Bujarrabal, B., Gentile, A.-R., Jones, R.J.A., Montanarella, L., Olazabal, C., Selvaradjou, S.-K., 2004. Reports of the Technical Working Groups Established under the Thematic Strategy for Soil Protection. EUR 21319 EN/1. Office for Official Publications of the European Communities, Luxembourg, 872 pp.
  • 32
    • 8744290781 scopus 로고    scopus 로고
    • A PCR test to detect the cereal root-knot nematode Meloidogyne naasi
    • Zijlstra C., van Hoof R., and Donkers-Venne D. A PCR test to detect the cereal root-knot nematode Meloidogyne naasi. Eur. J. Plant Pathol. 110 (2004) 855-860
    • (2004) Eur. J. Plant Pathol. , vol.110 , pp. 855-860
    • Zijlstra, C.1    van Hoof, R.2    Donkers-Venne, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.