Small subunit ribosomal DNA-based phylogeny of basal Chromadoria (Nematoda) suggests that transitions from marine to terrestrial habitats (and vice versa) require relatively simple adaptations

Molecular Phylogenetics and Evolution

Volumn 48, Issue 2, 2008, Pages 758-763

  Holterman, Martijn ^a   Holovachov, Oleksandr ^b   van den Elsen, Sven ^a   van Megen, Hanny ^a   Bongers, Tom ^a   Bakker, Jaap ^a   Helder, Johannes ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA;

ANIMAL; ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; ECOSYSTEM; GENETICS; MOLECULAR GENETICS; NEMATODE; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ANIMALS; DNA, RIBOSOMAL; ECOSYSTEM; MOLECULAR SEQUENCE DATA; NEMATODA; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

CHROMADORIA; NEMATODA;

EID: 47749102879     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.04.033     Document Type: Article

References (33)

1. Andrássy I. Evolution as a basis for the systematization of nematodes (1976), Pitman Publishing Ltd., London
2. Ben Ali A., Wuyts J., De Wachter R., Meyer A., and Van de Peer Y. Construction of a variability map for eukaryotic large subunit ribosomal RNA. Nucleic Acids Res. 27 (1999) 2825-2831
3. Blaxter L., De Ley P., Garey J.R., Liu L.X., Scheldeman P., Vierstraete A., Vanfleteren J.R., Mackey L.Y., Dorris M., Frisse L.M., Vida J.T., and Thomas W.K. A molecular evolutionary framework for the phylum Nematoda. Nature 392 (1998) 71-75
4. Bongers,T. 1994. De nematoden van Nederland. Koninklijke Nederlandse Natuurhistorische Vereniging, Utrecht.
5. De Ley P., Decraemer W., and Abebe E. Introduction: Summary of present knowledge and research addressing the ecology and taxonomy of freshwater nematodes. In: Abebe E., Andrassy I., and Traunspurger W. (Eds). Freshwater Nematodes, Ecology and Taxonomy (2006), CABI Publishing, Wallingford 3-30
6. Decraemer W., Karanastasi E., Brown D., and Backeljau T. Review of the ultrastructure of the nematode body cuticle and its phylogenetic interpretation. Biol. Rev. 78 (2003) 465-510
7. Filipjev I.N. Les nématodes libres de la baie de la Neva et de l'extrémeté orientale du Golfe de Finlande. Première partie. Arch. Hydrobiol. 20 (1929) 637-699
8. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41 (1999) 95-98
9. Hansson, H.G. 1998. NEAT (North East Atlantic Taxa): Scandinavian marine Nematoda check-list. http://www.tmbl.gu.se, 1-37.
10. Holovachov, O. 2006. Morphology and systematics of the order Plectida Malakhov, 1982 (Nematoda). In Laboratory of Nematology, Vol. PhD, p. 246. Wageningen University and Research Centre, Wageningen.
11. Holterman M., van der Wurff A., van den Elsen S., van Megen H., Bongers T., Holovachov O., Bakker J., and Helder J. Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Mol. Biol. Evol. 23 (2006) 1792-1800
12. Huang C.G., Lamitina S.T., Agre P., and Strange K. Functional analysis of the aquaporin gene family in Caenorhabditis elegans. Am. J. Physiol. Cell Physiol. 292 (2007) C1867-C1873
13. Inglis W.G. An Outline Classification of the Phylum Nematoda. Austr. J. Zool. 31 (1983) 243-255
14. Lamitina S.T., Morrison R., Moeckel G.W., and Strange K. Adaptation of the nematode Caenorhabditis elegans to extreme osmotic stress. Am. J. Physiol.-Cell Physiol. 286 (2004) C785-C791
15. Lorenzen S. Entwurf eines phylogenetischen Systems der freilebenden Nematoden. Veröffentichungen des Institut für Meeresforschung (Bremerhaven), Supplement 7 (1981) 1-472
16. Maddison D.R., and Maddison W.P. MacClade 4: Analysis of phylogeny and character evolution (2000), Sinauer Associates, Sunderland, Massachusetts
17. Maggenti A.R. General Nematology (1981), Springer-Verlag, New York
18. Malakhov V.V., Ryzhikov K.M., and Sonin M.D. The System of Large Taxa of Nematodes - Subclasses, Orders, Suborders. Zool. Zhurnal 61 (1982) 1125-1134
19. Mallatt J., and Giribet G. Further use of nearly complete, 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch. Mol. Phylogenet. Evol. 40 (2006) 772-794
20. Meldal B.H.M., Debenham N.J., De Ley P., Tandingan, De Ley I., Vanfleteren J., Vierstraete A., Bert W., Borgonie G., Moens T., Tyler P.A., Austen M.C., Blaxter M., Rogers A.D., and Lambshead P.J.D. An improved molecular phylogeny of the Nematoda with special emphasis on marine taxa. Mol. Phylogenet. Evol. 42 (2007) 622-636
21. Mullin P.G., Harris T.S., and Powers T.O. Phylogenetic relationships of Nygolaimina and Dorylaimina (Nematoda: Dorylaimida) inferred from small subunit ribosomal DNA sequences. Nematology 7 (2005) 59-79
22. Peters L., Traunspurger W., Wetzel M.A., and Rothhaupt K.O. Community development of free-living aquatic nematodes in littoral periphyton communities. Nematology 7 (2005) 901-916
23. Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
24. Rambaut, A., Drummond, A. 2005. Tracer v1.2.1. Available from. http://evolve.zoo.ox.ac.uk/.
25. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
26. Sanderson M.J., and Shaffer H.B. Troubleshooting molecular phylogenetic analyses. Annu. Rev. Ecol. Syst. 33 (2002) 49-72
27. Stamatakis A. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (2006) 2688-2690
28. Von Lieven A.F. Functional morphology and evolutionary origin of the three-part pharynx in nematodes. Zoology 106 (2003) 183-201
29. Wharton D.A., and Sommerville R.I. The Structure of the Excretory System of the Infective Larva of Haemonchus-Contortus. Int. J. Parasit. 14 (1984) 591-600
30. Wright D.J. Respiratory physiology, nitrogen excretion and osmotic and ionic regulation. In: Perry R.N., and Wright D.J. (Eds). The physiology and biochemistry of free-living and plant-parasitic nematodes (1998), CAB International, Wallingford, UK 103-131
31. Wright D.J. Osmoregularity and excretory behaviour. In: Gaugler R., and Bilgrami A.L. (Eds). Nematode Behaviour (2004), springer, berlin 177-196
32. Wright D.J., and Newall D.R. Osmotic and ionic regulation in nematodes. In: Zuckerman B.M. (Ed). Nematodes as biological models vol. 2 (1980), Academic Press, New York 143-164
33. Wu J.H., Somerfield P.J., Austen M.C., and Liang Y.L. The freeliving nematode genus Parodontophora Timm 1963 (Nematoda: Axonolaimidae) is not exclusively marine: Parodontophora limnophila sp. nov from freshwater in China. Hydrobiologia 431 (2000) 205-210