메뉴 건너뛰기




Volumn 32, Issue 3, 2006, Pages 325-337

Molecular sequencing and morphological analysis of a nematode community

Author keywords

18S rDNA; Biodiversity; Community analysis; Indicators; Molecular identification; nematodes

Indexed keywords

ANATONCHUS; APORCELAIMELLUS; CEPHALOBIDAE; CLARKUS; HOPLOLAIMIDAE; NEMATODA; PRATYLENCHUS; RHABDITIDA; TYLENCHIDA;

EID: 33646201598     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2005.07.006     Document Type: Article
Times cited : (57)

References (49)
  • 1
    • 0030484621 scopus 로고    scopus 로고
    • Temporal evolution of soil nematode communities in Pinus nigra forests of Navarra, Spain
    • Armendariz I., Hernandez M.A., and Jordana R. Temporal evolution of soil nematode communities in Pinus nigra forests of Navarra, Spain. Fundam. Appl. Nematol. 19 (1996) 561-577
    • (1996) Fundam. Appl. Nematol. , vol.19 , pp. 561-577
    • Armendariz, I.1    Hernandez, M.A.2    Jordana, R.3
  • 2
    • 0035210604 scopus 로고    scopus 로고
    • The meiofauna community of two small German streams as indicators of pollution
    • Beier S., and Traunspurger W. The meiofauna community of two small German streams as indicators of pollution. J. Aquat. Ecosyst. Stress Recovery 8 (2001) 387-405
    • (2001) J. Aquat. Ecosyst. Stress Recovery , vol.8 , pp. 387-405
    • Beier, S.1    Traunspurger, W.2
  • 3
    • 0346306244 scopus 로고    scopus 로고
    • Seasonal distribution of free-living nematodes in the Korsch, a coarse grained submountain carbonate stream in southwest Germany
    • Beier S., and Traunspurger W. Seasonal distribution of free-living nematodes in the Korsch, a coarse grained submountain carbonate stream in southwest Germany. Nematology 5 (2003) 481-504
    • (2003) Nematology , vol.5 , pp. 481-504
    • Beier, S.1    Traunspurger, W.2
  • 4
    • 0027040654 scopus 로고
    • Soil nematode biodiversity
    • Bernard E.C. Soil nematode biodiversity. Biol. Fertil. Soils 14 (1992) 99-103
    • (1992) Biol. Fertil. Soils , vol.14 , pp. 99-103
    • Bernard, E.C.1
  • 5
    • 0037313539 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities
    • Blackwood C.B., Marsh T., Kim S.H., and Paul E.A. Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities. Appl. Environ. Microbiol. 69 (2003) 926-932
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 926-932
    • Blackwood, C.B.1    Marsh, T.2    Kim, S.H.3    Paul, E.A.4
  • 8
    • 0025660096 scopus 로고
    • The maturity index-an ecological measure of environmental disturbance based on nematode species composition
    • Bongers T. The maturity index-an ecological measure of environmental disturbance based on nematode species composition. Oecologia 83 (1990) 14-19
    • (1990) Oecologia , vol.83 , pp. 14-19
    • Bongers, T.1
  • 9
    • 33646201170 scopus 로고    scopus 로고
    • Bongers, T., 1994. De nematoden van Nederland. Koninklandse Nederlandse Natuurhistoriche Vereniging, Utrecht, 408 pp.
  • 10
    • 0001670956 scopus 로고    scopus 로고
    • Functional diversity of nematodes
    • Bongers T., and Bongers M. Functional diversity of nematodes. Appl. Soil Ecol. 10 (1998) 239-251
    • (1998) Appl. Soil Ecol. , vol.10 , pp. 239-251
    • Bongers, T.1    Bongers, M.2
  • 11
    • 0033151303 scopus 로고    scopus 로고
    • Nematode community structure as a bioindicator in environmental monitoring
    • Bongers T., and Ferris H. Nematode community structure as a bioindicator in environmental monitoring. Trends Ecol. Evol. 14 (1999) 224-228
    • (1999) Trends Ecol. Evol. , vol.14 , pp. 224-228
    • Bongers, T.1    Ferris, H.2
  • 12
    • 0001772214 scopus 로고
    • An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples
    • Brown D.J.F., and Boag B. An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples. Nematol. Medit. 16 (1988) 93-99
    • (1988) Nematol. Medit. , vol.16 , pp. 93-99
    • Brown, D.J.F.1    Boag, B.2
  • 13
    • 0036421916 scopus 로고    scopus 로고
    • Present status and future of nematode systematics
    • Coomans A. Present status and future of nematode systematics. Nematology 4 (2002) 573-582
    • (2002) Nematology , vol.4 , pp. 573-582
    • Coomans, A.1
  • 14
    • 0037933301 scopus 로고    scopus 로고
    • Using RAPD markers to analyse genetic diversity in Portuguese potato cyst nematode populations
    • Da Conceicao I.L.P.M., Dos Santos M.C.V., Abrantes I.M.D., and Santos M.S.N.D. Using RAPD markers to analyse genetic diversity in Portuguese potato cyst nematode populations. Nematology 5 (2003) 137-143
    • (2003) Nematology , vol.5 , pp. 137-143
    • Da Conceicao, I.L.P.M.1    Dos Santos, M.C.V.2    Abrantes, I.M.D.3    Santos, M.S.N.D.4
  • 15
    • 0033135245 scopus 로고    scopus 로고
    • Molecular analysis of nematode diversity and the evolution of parasitism
    • Dorris M., De Ley P., and Blaxter M.L. Molecular analysis of nematode diversity and the evolution of parasitism. Parasitol. Today 15 (1999) 188-193
    • (1999) Parasitol. Today , vol.15 , pp. 188-193
    • Dorris, M.1    De Ley, P.2    Blaxter, M.L.3
  • 16
    • 0032362327 scopus 로고    scopus 로고
    • Soil nematode diversity: species coexistence and ecosystem function
    • Ettema C.H. Soil nematode diversity: species coexistence and ecosystem function. J. Nematol. 30 (1998) 159-169
    • (1998) J. Nematol. , vol.30 , pp. 159-169
    • Ettema, C.H.1
  • 17
    • 0037298479 scopus 로고    scopus 로고
    • Nested spatial biodiversity patterns of nematode genera in a New Zealand forest and pasture soil
    • Ettema C.H., and Yeates G.W. Nested spatial biodiversity patterns of nematode genera in a New Zealand forest and pasture soil. Soil Biol. Biochem. 35 (2003) 339-342
    • (2003) Soil Biol. Biochem. , vol.35 , pp. 339-342
    • Ettema, C.H.1    Yeates, G.W.2
  • 18
    • 0032825132 scopus 로고    scopus 로고
    • Riparian soil response to surface nitrogen input: the indicator potential of free-living soil nematode populations
    • Ettema C.H., Lowrance R., and Coleman D.C. Riparian soil response to surface nitrogen input: the indicator potential of free-living soil nematode populations. Soil Biol. Biochem. 31 (1999) 1625-1638
    • (1999) Soil Biol. Biochem. , vol.31 , pp. 1625-1638
    • Ettema, C.H.1    Lowrance, R.2    Coleman, D.C.3
  • 19
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. II. Error probabilities
    • Ewing B., and Green P. Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res. 8 (1998) 186-194
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 20
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
    • Ewing B., Hillier L., Wendl M.C., and Green P. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8 (1998) 175-185
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 21
    • 0038463548 scopus 로고    scopus 로고
    • Comparison of biological, molecular and morphological methods of species identification in a set of cultured Panagrolaimus isolates
    • Eyualem A., and Blaxter M. Comparison of biological, molecular and morphological methods of species identification in a set of cultured Panagrolaimus isolates. J. Nematol. 35 (2003) 119-128
    • (2003) J. Nematol. , vol.35 , pp. 119-128
    • Eyualem, A.1    Blaxter, M.2
  • 22
    • 0038587374 scopus 로고    scopus 로고
    • Structural and functional succession in the nematode fauna of a soil food web
    • Ferris H., and Matute M.M. Structural and functional succession in the nematode fauna of a soil food web. Appl. Soil Ecol. 23 (2003) 93-110
    • (2003) Appl. Soil Ecol. , vol.23 , pp. 93-110
    • Ferris, H.1    Matute, M.M.2
  • 23
    • 0034891726 scopus 로고    scopus 로고
    • A framework for soil food web diagnostics: extension of the nematode faunal analysis concept
    • Ferris H., Bongers T., and De Goede R.G.M. A framework for soil food web diagnostics: extension of the nematode faunal analysis concept. Appl. Soil Ecol. 18 (2001) 13-29
    • (2001) Appl. Soil Ecol. , vol.18 , pp. 13-29
    • Ferris, H.1    Bongers, T.2    De Goede, R.G.M.3
  • 24
    • 0033482426 scopus 로고    scopus 로고
    • Phylogenetic relationships of Globodera millefolii, G. artemisiae and Cactodera salina based on ITS region of ribosomal DNA
    • Ferris V.R., Krall E., Faghihi J., and Ferris J.M. Phylogenetic relationships of Globodera millefolii, G. artemisiae and Cactodera salina based on ITS region of ribosomal DNA. J. Nematol. 31 (1999) 498-507
    • (1999) J. Nematol. , vol.31 , pp. 498-507
    • Ferris, V.R.1    Krall, E.2    Faghihi, J.3    Ferris, J.M.4
  • 25
    • 0028906514 scopus 로고
    • 18S ribosomal-RNA gene phylogeny for some Rhabditidae related to Caenorhabditis
    • Fitch D.H.A., Bugajgaweda B., and Emmons S.W. 18S ribosomal-RNA gene phylogeny for some Rhabditidae related to Caenorhabditis. Mol. Biol. Evol. 12 (1995) 346-358
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 346-358
    • Fitch, D.H.A.1    Bugajgaweda, B.2    Emmons, S.W.3
  • 26
    • 0036010841 scopus 로고    scopus 로고
    • Molecular barcodes for soil nematode identification
    • Floyd R., Abebe E., Papert A., and Blaxter M. Molecular barcodes for soil nematode identification. Mol. Ecol. 11 (2002) 839-850
    • (2002) Mol. Ecol. , vol.11 , pp. 839-850
    • Floyd, R.1    Abebe, E.2    Papert, A.3    Blaxter, M.4
  • 27
    • 0036213539 scopus 로고    scopus 로고
    • Development of a polymerase chain reaction-based denaturing gradient gel electrophoresis technique to study nematode species biodiversity using the 18s rDNA gene
    • Foucher A., and Wilson M. Development of a polymerase chain reaction-based denaturing gradient gel electrophoresis technique to study nematode species biodiversity using the 18s rDNA gene. Mol. Ecol. Notes 2 (2002) 45-48
    • (2002) Mol. Ecol. Notes , vol.2 , pp. 45-48
    • Foucher, A.1    Wilson, M.2
  • 28
    • 5644303122 scopus 로고    scopus 로고
    • Assessment of nematode biodiversity using DGGE of 18S rDNA following extraction of nematodes from soil
    • Foucher A.L.J.L., Bongers T., Noble L.R., and Wilson M.J. Assessment of nematode biodiversity using DGGE of 18S rDNA following extraction of nematodes from soil. Soil Biol. Biochem. 36 (2004) 2027-2032
    • (2004) Soil Biol. Biochem. , vol.36 , pp. 2027-2032
    • Foucher, A.L.J.L.1    Bongers, T.2    Noble, L.R.3    Wilson, M.J.4
  • 29
    • 0027868592 scopus 로고
    • Assessing nematode communities in agroecosystems of varying human intervention
    • Freckman D.W., and Ettema C.H. Assessing nematode communities in agroecosystems of varying human intervention. Agric. Ecosyst. Environ. 45 (1993) 239-261
    • (1993) Agric. Ecosyst. Environ. , vol.45 , pp. 239-261
    • Freckman, D.W.1    Ettema, C.H.2
  • 30
    • 0022554669 scopus 로고
    • Nematode diversity and industrial-pollution in the hunter river estuary, NSW
    • Hodda M., and Nicholas W.L. Nematode diversity and industrial-pollution in the hunter river estuary, NSW. Aust. Mar. Poll. Bull. 17 (1986) 251-255
    • (1986) Aust. Mar. Poll. Bull. , vol.17 , pp. 251-255
    • Hodda, M.1    Nicholas, W.L.2
  • 31
    • 0028164503 scopus 로고
    • Nematodes from an English chalk grassland-species distributions
    • Hodda M., and Wanless F.R. Nematodes from an English chalk grassland-species distributions. Nematologica 40 (1994) 116-132
    • (1994) Nematologica , vol.40 , pp. 116-132
    • Hodda, M.1    Wanless, F.R.2
  • 32
    • 0001318827 scopus 로고
    • Sub-catastrophic sewage and industrial-waste contamination as revealed by marine nematode faunal analysis
    • Lambshead P.J.D. Sub-catastrophic sewage and industrial-waste contamination as revealed by marine nematode faunal analysis. Mar. Ecol. Prog. Ser. 29 (1986) 247-260
    • (1986) Mar. Ecol. Prog. Ser. , vol.29 , pp. 247-260
    • Lambshead, P.J.D.1
  • 33
    • 0036203448 scopus 로고    scopus 로고
    • Multiple sequence alignment using partial order graphs
    • Lee C., Grasso C., and Sharlow M. Multiple sequence alignment using partial order graphs. Bioinformatics 18 (2002) 452-464
    • (2002) Bioinformatics , vol.18 , pp. 452-464
    • Lee, C.1    Grasso, C.2    Sharlow, M.3
  • 34
    • 0032815914 scopus 로고    scopus 로고
    • Molecular differentiation and phylogeny of entomopathogenic nematodes (Rhabditida: Heterorhabditidae) based on ND4 gene sequences of mitochondrial DNA
    • Liu J., Berry R.E., and Blouin M.S. Molecular differentiation and phylogeny of entomopathogenic nematodes (Rhabditida: Heterorhabditidae) based on ND4 gene sequences of mitochondrial DNA. J. Parasitol. 85 (1999) 709-715
    • (1999) J. Parasitol. , vol.85 , pp. 709-715
    • Liu, J.1    Berry, R.E.2    Blouin, M.S.3
  • 35
    • 4444299144 scopus 로고    scopus 로고
    • TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments
    • Milne I., Wright F., Rowe G., Marshal D.F., Husmeier D., and McGuire G. TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics 20 (2004) 1806-1807
    • (2004) Bioinformatics , vol.20 , pp. 1806-1807
    • Milne, I.1    Wright, F.2    Rowe, G.3    Marshal, D.F.4    Husmeier, D.5    McGuire, G.6
  • 36
    • 0029749403 scopus 로고    scopus 로고
    • The effect of environment on marine nematode assemblages as indicated by the maturity index
    • Neilson R., Boag B., and Palmer L.F. The effect of environment on marine nematode assemblages as indicated by the maturity index. Nematologica (1996) 232-242
    • (1996) Nematologica , pp. 232-242
    • Neilson, R.1    Boag, B.2    Palmer, L.F.3
  • 38
    • 4444358652 scopus 로고    scopus 로고
    • Phylogenetic relationships among Xiphinema and Xiphidorus nematode species from Brazil inferred from 18S rDNA sequences
    • Oliveira C.M.G., Hubschen J., Brown D.J.F., Ferraz L.C.C.B., Wright F., and Neilson R. Phylogenetic relationships among Xiphinema and Xiphidorus nematode species from Brazil inferred from 18S rDNA sequences. J. Nematol. 36 (2004) 153-159
    • (2004) J. Nematol. , vol.36 , pp. 153-159
    • Oliveira, C.M.G.1    Hubschen, J.2    Brown, D.J.F.3    Ferraz, L.C.C.B.4    Wright, F.5    Neilson, R.6
  • 39
    • 0032742227 scopus 로고    scopus 로고
    • Utility of nematode community analysis as an integrated measure of the functional state of soils: perspectives and challenges
    • Ritz K., and Trudgill D.L. Utility of nematode community analysis as an integrated measure of the functional state of soils: perspectives and challenges. Plant Soil 212 (1999) 1-11
    • (1999) Plant Soil , vol.212 , pp. 1-11
    • Ritz, K.1    Trudgill, D.L.2
  • 40
    • 0032339149 scopus 로고    scopus 로고
    • Non-manual lysis of second-stage Meloidogyne juveniles for identification of pure and mixed samples based on the polymerase chain reaction
    • Stanton J.M., McNicol C.D., and Steele V. Non-manual lysis of second-stage Meloidogyne juveniles for identification of pure and mixed samples based on the polymerase chain reaction. Aust. Plant Pathol. 27 (1998) 112-115
    • (1998) Aust. Plant Pathol. , vol.27 , pp. 112-115
    • Stanton, J.M.1    McNicol, C.D.2    Steele, V.3
  • 41
    • 84972065903 scopus 로고
    • Rarefaction and rarefiction-the use and abuse of a method in paleontology
    • Tipper J.C. Rarefaction and rarefiction-the use and abuse of a method in paleontology. Paleobiology 5 (1979) 423-434
    • (1979) Paleobiology , vol.5 , pp. 423-434
    • Tipper, J.C.1
  • 42
    • 0001115915 scopus 로고    scopus 로고
    • Effects of management practices on nematode community structure in tallgrass prairie
    • Todd T.C. Effects of management practices on nematode community structure in tallgrass prairie. Appl. Soil Ecol. 3 (1996) 235-246
    • (1996) Appl. Soil Ecol. , vol.3 , pp. 235-246
    • Todd, T.C.1
  • 43
    • 0027871331 scopus 로고
    • Differentiation of bacterial-feeding nematodes in soil ecological studies by means of arbitrarily-primed PCR
    • Vanderknapp E., Rodriguez R.J., and Freckman D.W. Differentiation of bacterial-feeding nematodes in soil ecological studies by means of arbitrarily-primed PCR. Soil Biol. Biochem. 25 (1993) 1141-1151
    • (1993) Soil Biol. Biochem. , vol.25 , pp. 1141-1151
    • Vanderknapp, E.1    Rodriguez, R.J.2    Freckman, D.W.3
  • 45
    • 0029500649 scopus 로고
    • The detritus food-web and the diversity of soil fauna as indicators of disturbance regimes in agro-ecosystems
    • Wardle D.A., Yeates G.W., Watson R.N., and Nicholson K.S. The detritus food-web and the diversity of soil fauna as indicators of disturbance regimes in agro-ecosystems. Plant Soil 170 (1995) 35-43
    • (1995) Plant Soil , vol.170 , pp. 35-43
    • Wardle, D.A.1    Yeates, G.W.2    Watson, R.N.3    Nicholson, K.S.4
  • 46
    • 0025680537 scopus 로고
    • Analysis of macrobenthic and meiobenthic community structure in relation to pollution and disturbance in Hamilton harbor, Bermuda
    • Warwick R.M., Platt H.M., Clarke K.R., Agard J., and Gobin J. Analysis of macrobenthic and meiobenthic community structure in relation to pollution and disturbance in Hamilton harbor, Bermuda. J. Exp. Mar. Biol. Ecol. 138 (1990) 119-142
    • (1990) J. Exp. Mar. Biol. Ecol. , vol.138 , pp. 119-142
    • Warwick, R.M.1    Platt, H.M.2    Clarke, K.R.3    Agard, J.4    Gobin, J.5
  • 47
    • 0026486497 scopus 로고
    • Sample adequately to estimate variograms of soil properties
    • Webster R., and Oliver M.A. Sample adequately to estimate variograms of soil properties. J. Soil Sci. 43 (1992) 177-192
    • (1992) J. Soil Sci. , vol.43 , pp. 177-192
    • Webster, R.1    Oliver, M.A.2
  • 48
    • 0038368776 scopus 로고    scopus 로고
    • Nematodes as soil indicators: functional and biodiversity aspects
    • Yeates G.W. Nematodes as soil indicators: functional and biodiversity aspects. Biol. Fertil. Soils 37 (2003) 199-210
    • (2003) Biol. Fertil. Soils , vol.37 , pp. 199-210
    • Yeates, G.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.