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Volumn 18, Issue 3, 2012, Pages 508-518

A 5′-terminal phosphate is required for stable ternary complex formation and translation of leaderless mRNA in Escherichia coli

Author keywords

5 phosphate; Leaderless mRNA; Ribosome binding; Translation initiation

Indexed keywords

5' HYDROXYL; 5' PHOSPHATE; BETA GALACTOSIDASE; HAMMERHEAD RIBOZYME; HYDROXYL GROUP; LEADERED MRNA; LEADERLESS MRNA; MESSENGER RNA; PHOSPHATE; TERNARY COMPLEX FACTOR; TRANSFER RNA; UNCLASSIFIED DRUG; BACTERIAL RNA; DINUCLEOSIDE PHOSPHATE; HYDROXIDE; HYDROXIDE ION; RIBOZYME;

EID: 84857408102     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.027698.111     Document Type: Article
Times cited : (21)

References (42)
  • 1
    • 0026569497 scopus 로고
    • Unusual ribosome binding properties of mRNA encoding bacteriophage l repressor
    • Balakin AG, Skripkin EA, Shatsky IN, Bogdanov AA. 1992. Unusual ribosome binding properties of mRNA encoding bacteriophage l repressor. Nucleic Acids Res 20: 563-571.
    • (1992) Nucleic Acids Res , vol.20 , pp. 563-571
    • Balakin, A.G.1    Skripkin, E.A.2    Shatsky, I.N.3    Bogdanov, A.A.4
  • 3
    • 52949137901 scopus 로고    scopus 로고
    • Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5′-terminal AUG
    • Brock JE, Pourshahian S, Giliberti J, Limbach PA, Janssen GR. 2008. Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5′-terminal AUG. RNA 14: 2159-2169.
    • (2008) RNA , vol.14 , pp. 2159-2169
    • Brock, J.E.1    Pourshahian, S.2    Giliberti, J.3    Limbach, P.A.4    Janssen, G.R.5
  • 4
    • 0024283909 scopus 로고
    • An archaebacterial RNA polymerase binding site and transcription initiation of the hisA gene in Methanococcus vannielii
    • Brown JW, Thomm M, Beckler GS, Frey G, Stetter KO, Reeve JN. 1988. An archaebacterial RNA polymerase binding site and transcription initiation of the hisA gene in Methanococcus vannielii. Nucleic Acids Res 16: 135-150.
    • (1988) Nucleic Acids Res , vol.16 , pp. 135-150
    • Brown, J.W.1    Thomm, M.2    Beckler, G.S.3    Frey, G.4    Stetter, K.O.5    Reeve, J.N.6
  • 5
    • 33646263111 scopus 로고    scopus 로고
    • Analysis of SD sequences in completed microbial genomes: Non-SD-led genes are as common as SD-led genes
    • Chang B, Halgamuge S, Tang S. 2006. Analysis of SD sequences in completed microbial genomes: Non-SD-led genes are as common as SD-led genes. Gene 373: 90-99.
    • (2006) Gene , vol.373 , pp. 90-99
    • Chang, B.1    Halgamuge, S.2    Tang, S.3
  • 6
    • 64049090242 scopus 로고    scopus 로고
    • Killer and protective ribosomes
    • Dreyfus M. 2009. Killer and protective ribosomes. Prog Mol Biol Transl Sci 85: 423-466.
    • (2009) Prog Mol Biol Transl Sci , vol.85 , pp. 423-466
    • Dreyfus, M.1
  • 7
    • 9744230656 scopus 로고    scopus 로고
    • Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites
    • DOI 10.1016/j.molcel.2004.10.030, PII S1097276504006550
    • Fahlman RP, Dale T, Uhlenbeck OC. 2004. Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites. Mol Cell 16: 799-805. (Pubitemid 39586537)
    • (2004) Molecular Cell , vol.16 , Issue.5 , pp. 799-805
    • Fahlman, R.P.1    Dale, T.2    Uhlenbeck, O.C.3
  • 8
    • 0036282055 scopus 로고    scopus 로고
    • Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site
    • DOI 10.1016/S1097-2765(02)00523-3
    • Fredrick K, Noller HF. 2002. Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site. Mol Cell 9: 1125-1131. (Pubitemid 34626680)
    • (2002) Molecular Cell , vol.9 , Issue.5 , pp. 1125-1131
    • Fredrick, K.1    Noller, H.F.2
  • 9
    • 0035957756 scopus 로고    scopus 로고
    • Modulation of ribosomal recruitment to 5′-terminal start codons by translation initiation factors IF2 and IF3
    • DOI 10.1016/S0014-5793(01)02378-X, PII S001457930102378X
    • Grill S, Moll I, Hasenohrl D, Gualerzi CO, Blasi U. 2001. Modulation of ribosomal recruitment to 5′-terminal start codons by translation initiation factors IF2 and IF3. FEBS Lett 495: 167-171. (Pubitemid 32397698)
    • (2001) FEBS Letters , vol.495 , Issue.3 , pp. 167-171
    • Grill, S.1    Moll, I.2    Hasenohrl, D.3    Gualerzi, C.O.4    Blasi, U.5
  • 10
    • 0023373136 scopus 로고
    • Specialized ribosome system: Preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli
    • Hui A, de Boer HA. 1987. Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli. Proc Natl Acad Sci 84: 4762-4766.
    • (1987) Proc Natl Acad Sci , vol.84 , pp. 4762-4766
    • Hui, A.1    De Boer, H.A.2
  • 11
    • 0023372380 scopus 로고
    • A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins
    • Jacob WF, Santer M, Dahlberg AE. 1987. A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins. Proc Natl Acad Sci 84: 4757-4761.
    • (1987) Proc Natl Acad Sci , vol.84 , pp. 4757-4761
    • Jacob, W.F.1    Santer, M.2    Dahlberg, A.E.3
  • 12
    • 0003123750 scopus 로고
    • Eubacterial, archaeabacterial, and eukaryotic genes that encode leaderless mRNA
    • (ed. R Baltz et al.), ASM Press, Washington, D.C.
    • Janssen GR. 1993. Eubacterial, archaeabacterial, and eukaryotic genes that encode leaderless mRNA. In Industrial microorganisms: basic and applied molecular genetics. (ed. R Baltz et al.), pp. 59-67. ASM Press, Washington, D.C.
    • (1993) Industrial Microorganisms: Basic and Applied Molecular Genetics , pp. 59-67
    • Janssen, G.R.1
  • 14
    • 58649086299 scopus 로고    scopus 로고
    • An unexpected type of ribosomes induced by kasugamycin: A look into ancestral times of protein synthesis?
    • Kaberdina AC, Szaflarski W, Nierhaus KH, Moll I. 2009. An unexpected type of ribosomes induced by kasugamycin: a look into ancestral times of protein synthesis? Mol Cell 33: 227-236.
    • (2009) Mol Cell , vol.33 , pp. 227-236
    • Kaberdina, A.C.1    Szaflarski, W.2    Nierhaus, K.H.3    Moll, I.4
  • 15
    • 33748582906 scopus 로고    scopus 로고
    • Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements
    • DOI 10.1016/j.cell.2006.08.032, PII S0092867406011469
    • Korostelev A, Trakhanov S, Laurberg M, Noller HF. 2006. Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126: 1065-1077. (Pubitemid 44380300)
    • (2006) Cell , vol.126 , Issue.6 , pp. 1065-1077
    • Korostelev, A.1    Trakhanov, S.2    Laurberg, M.3    Noller, H.F.4
  • 16
    • 78649637278 scopus 로고    scopus 로고
    • Proximity of the start codon to a leaderless mRNA's 5′-terminus is a strong positive determinant of ribosome binding and expression in Escherichia coli
    • Krishnan KM, Van Etten WJ 3rd, Janssen GR. 2010. Proximity of the start codon to a leaderless mRNA's 5′-terminus is a strong positive determinant of ribosome binding and expression in Escherichia coli. J Bacteriol 192: 6482-6485.
    • (2010) J Bacteriol , vol.192 , pp. 6482-6485
    • Krishnan, K.M.1    Van Etten III, W.J.2    Janssen, G.R.3
  • 17
    • 0029383434 scopus 로고
    • From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors
    • La Teana A, Gualerzi CO, Brimacombe R. 1995. From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors. RNA 1: 772-782.
    • (1995) RNA , vol.1 , pp. 772-782
    • La Teana, A.1    Gualerzi, C.O.2    Brimacombe, R.3
  • 18
    • 79953721157 scopus 로고    scopus 로고
    • Translation initiation: Variations in the mechanism can be anticipated
    • Malys N, McCarthy JE. 2010. Translation initiation: variations in the mechanism can be anticipated. Cell Mol Life Sci 68: 991-1003.
    • (2010) Cell Mol Life Sci , vol.68 , pp. 991-1003
    • Malys, N.1    McCarthy, J.E.2
  • 19
    • 0033000488 scopus 로고    scopus 로고
    • A downstream CA repeat sequence increases translation from leadered and unleadered mRNA in Escherichia coli
    • DOI 10.1046/j.1365-2958.1999.01228.x
    • Martin-Farmer JA, Janssen GR. 1999. A downstream CA repeat sequence increases translation from leadered and unleadered mRNA in Escherichia coli. Mol Microbiol 31: 1025-1038. (Pubitemid 29082234)
    • (1999) Molecular Microbiology , vol.31 , Issue.4 , pp. 1025-1038
    • Martin-Farmer, J.1    Janssen, G.R.2
  • 20
    • 34548788950 scopus 로고    scopus 로고
    • Structured mRNAs Regulate Translation Initiation by Binding to the Platform of the Ribosome
    • DOI 10.1016/j.cell.2007.07.008, PII S0092867407008951
    • Marzi S, Myasnikov AG, Serganov A, Ehresmann C, Romby P, Yusupov M, Klaholz BP. 2007. Structured mRNAs regulate translation initiation by binding to the platform of the ribosome. Cell 130: 1019-1031. (Pubitemid 47422303)
    • (2007) Cell , vol.130 , Issue.6 , pp. 1019-1031
    • Marzi, S.1    Myasnikov, A.G.2    Serganov, A.3    Ehresmann, C.4    Romby, P.5    Yusupov, M.6    Klaholz, B.P.7
  • 21
    • 0001971916 scopus 로고
    • A short course in bacterial genetics
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller J. 1992. A short course in bacterial genetics. In A laboratory manual for Escherichia coli and related bacteria. Vol 1, pp. 72-74. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1992) A Laboratory Manual for Escherichia Coli and Related Bacteria , vol.1 , pp. 72-74
    • Miller, J.1
  • 22
    • 77956940474 scopus 로고    scopus 로고
    • The 5′-7-methylguanosine cap on eukaryotic mRNAs serves both to stimulate canonical translation initiation and to block an alternative pathway
    • Mitchell SF, Walker SE, Algire MA, Park E, Hinnebusch AG, Lorsch JR. 2010. The 5′-7-methylguanosine cap on eukaryotic mRNAs serves both to stimulate canonical translation initiation and to block an alternative pathway. Mol Cell 39: 950-962.
    • (2010) Mol Cell , vol.39 , pp. 950-962
    • Mitchell, S.F.1    Walker, S.E.2    Algire, M.A.3    Park, E.4    Hinnebusch, A.G.5    Lorsch, J.R.6
  • 23
    • 3042690803 scopus 로고    scopus 로고
    • Translation initiation with 70S ribosomes: An alternative pathway for leaderless mRNAs
    • DOI 10.1093/nar/gkh663
    • Moll I, Hirokawa G, Kiel MC, Kaji A, Blasi U. 2004. Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs. Nucleic Acids Res 32: 3354-3363. (Pubitemid 39117451)
    • (2004) Nucleic Acids Research , vol.32 , Issue.11 , pp. 3354-3363
    • Moll, I.1    Hirokawa, G.2    Kiel, M.C.3    Kaji, A.4    Blasi, U.5
  • 24
    • 0026004137 scopus 로고
    • Transcription and decay of the lac messenger: Role of an intergenic terminator
    • Murakawa GJ, Kwan C, Yamashita J, Nierlich DP. 1991. Transcription and decay of the lac messenger: role of an intergenic terminator. J Bacteriol 173: 28-36.
    • (1991) J Bacteriol , vol.173 , pp. 28-36
    • Murakawa, G.J.1    Kwan, C.2    Yamashita, J.3    Nierlich, D.P.4
  • 25
    • 77950911751 scopus 로고    scopus 로고
    • Dynamic evolution of translation initiation mechanisms in prokaryotes
    • Nakagawa S, Niimura Y, Miura K, Gojobori T. 2010. Dynamic evolution of translation initiation mechanisms in prokaryotes. Proc Natl Acad Sci 107: 6382-6387.
    • (2010) Proc Natl Acad Sci , vol.107 , pp. 6382-6387
    • Nakagawa, S.1    Niimura, Y.2    Miura, K.3    Gojobori, T.4
  • 26
    • 0035141942 scopus 로고    scopus 로고
    • The initiation codon affects ribosome binding and translational efficiency in Escherichia coli of cI mRNA with or without the 5′ untranslated leader
    • DOI 10.1128/JB.183.4.1277-1283.2001
    • O'Donnell SM, Janssen GR. 2001. The initiation codon effects ribosome binding and translational efficiency in Escherichia coli of cI mRNA with or without the 5′ untranslated leader. J Bacteriol 183: 1277-1283. (Pubitemid 32107723)
    • (2001) Journal of Bacteriology , vol.183 , Issue.4 , pp. 1277-1283
    • O'Donnell, S.M.1    Janssen, G.R.2
  • 27
    • 0036889040 scopus 로고    scopus 로고
    • Leaderless mRNAs bind 70S ribosomes more strongly than 30S ribosomal subunits in Escherichia coli
    • DOI 10.1128/JB.184.23.6730-6733.2002
    • O'Donnell SM, Janssen GR. 2002. Leaderless mRNAs bind 70S ribosomes more strongly than 30S ribosomal subunits in Escherichia coli. J Bacteriol 184: 6730-6733. (Pubitemid 35332579)
    • (2002) Journal of Bacteriology , vol.184 , Issue.23 , pp. 6730-6733
    • O'Donnell, S.M.1    Janssen, G.R.2
  • 28
    • 0029020003 scopus 로고
    • Crystallization of RNA-protein complexes I.Methods for the large-scale preparation of RNA suitable for crystallographic studies
    • Price SR, Ito N, Oubridge C, Avis JM, Nagai K. 1995. Crystallization of RNA-protein complexes I.Methods for the large-scale preparation of RNA suitable for crystallographic studies. J Mol Biol 249: 398-408.
    • (1995) J Mol Biol , vol.249 , pp. 398-408
    • Price, S.R.1    Ito, N.2    Oubridge, C.3    Avis, J.M.4    Nagai, K.5
  • 30
    • 0015422703 scopus 로고
    • Fine-structure deletion map of the Escherichia coli L-arabinose operon
    • Schleif R. 1972. Fine-structure deletion map of the Escherichia coli L-arabinose operon. Proc Natl Acad Sci 11: 3479-3484.
    • (1972) Proc Natl Acad Sci , vol.11 , pp. 3479-3484
    • Schleif, R.1
  • 31
    • 70350654363 scopus 로고    scopus 로고
    • What recent ribosome structures have revealed about the mechanism of translation
    • Schmeing TM, Ramakrishnan V. 2009. What recent ribosome structures have revealed about the mechanism of translation. Nature 461: 1234-1242.
    • (2009) Nature , vol.461 , pp. 1234-1242
    • Schmeing, T.M.1    Ramakrishnan, V.2
  • 34
    • 0016154301 scopus 로고
    • The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites
    • Shine J, Dalgarno L. 1974. The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc Natl Acad Sci 71: 1342-1346.
    • (1974) Proc Natl Acad Sci , vol.71 , pp. 1342-1346
    • Shine, J.1    Dalgarno, L.2
  • 35
    • 67651180795 scopus 로고    scopus 로고
    • Contribution of ribosomal residues to P-site tRNA binding
    • Shoji S, Abdi NM, Bundschuh R, Fredrick K. 2009. Contribution of ribosomal residues to P-site tRNA binding. Nucleic Acids Res 37: 4033-4042.
    • (2009) Nucleic Acids Res , vol.37 , pp. 4033-4042
    • Shoji, S.1    Abdi, N.M.2    Bundschuh, R.3    Fredrick, K.4
  • 37
    • 0011343769 scopus 로고
    • How ribosomes select initiator regions in mRNA: Base pair formation between the 39 terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli
    • Steitz JA, Jakes K. 1975. How ribosomes select initiator regions in mRNA: base pair formation between the 39 terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. Proc Natl Acad Sci 72: 4734-4738.
    • (1975) Proc Natl Acad Sci , vol.72 , pp. 4734-4738
    • Steitz, J.A.1    Jakes, K.2
  • 38
    • 0032896616 scopus 로고    scopus 로고
    • Translation initiation factor 3 antagonizes authentic start codon selection on leaderless mRNAs
    • DOI 10.1046/j.1365-2958.1999.01147.x
    • Tedin K, Moll I, Grill S, Resch A, Gualerzi CO, Blasi U. 1999. Translation initiation factor 3 antagonizes authentic start codon selection on leaderless mRNAs. Mol Microbiol 31: 67-77. (Pubitemid 29012149)
    • (1999) Molecular Microbiology , vol.31 , Issue.1 , pp. 67-77
    • Tedin, K.1    Moll, I.2    Grill, S.3    Resch, A.4    Graschopf, A.5    Gualerzi, C.O.6    Blasi, U.7
  • 39
    • 1542275552 scopus 로고    scopus 로고
    • Evidence for the Translation Initiation of Leaderless mRNAs by the Intact 70 S Ribosome without Its Dissociation into Subunits in Eubacteria
    • DOI 10.1074/jbc.M308784200
    • Udagawa T, Shimizu Y, Ueda T. 2004. Evidence for the translation initiation of leaderless mRNAs by intact 70S ribosomes without its dissociation into subunits in eubacteria. J Biol Chem 279: 8539-8546. (Pubitemid 38295907)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.10 , pp. 8539-8546
    • Udagawa, T.1    Shimizu, Y.2    Ueda, T.3
  • 40
    • 0031780494 scopus 로고    scopus 로고
    • An AUG initiation codon, not codon-anticodon complementarity, is required for the translation of unleadered mRNA in Escherichia coli
    • DOI 10.1046/j.1365-2958.1998.00744.x
    • Van Etten W, Janssen GR. 1998. An AUG initiation codon, not codon-anticodon complementarity, is required for the translation of unleadered mRNA in Escherichia coli. Mol Microbiol 27: 987-1001. (Pubitemid 28254948)
    • (1998) Molecular Microbiology , vol.27 , Issue.5 , pp. 987-1001
    • Van Etten, W.J.1    Janssen, G.R.2
  • 41
    • 0029806263 scopus 로고    scopus 로고
    • Translation of vph mRNA in Streptomyces lividans and Escherichia coli after removal of the 5' untranslated leader
    • Wu CJ, Janssen GR. 1996. Translation of vph mRNA in Streptomyces lividans and Escherichia coli after removal of the 5′ untranslated leader. Mol Microbiol 22: 339-355. (Pubitemid 26352698)
    • (1996) Molecular Microbiology , vol.22 , Issue.2 , pp. 339-355
    • Wu, C.-J.1    Janssen, G.R.2
  • 42
    • 0035958587 scopus 로고    scopus 로고
    • The path of messenger RNA through the ribosome
    • DOI 10.1016/S0092-8674(01)00435-4
    • Yusupova GZ, Yusupov MM, Cate JH, Noller HF. 2001. The path of messenger RNA through the ribosome. Cell 106: 233-241. (Pubitemid 32772633)
    • (2001) Cell , vol.106 , Issue.2 , pp. 233-241
    • Yusupova, G.Zh.1    Yusupov, M.M.2    Cate, J.H.D.3    Noller, H.F.4


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