Translation of vph mRNA in Streptomyces lividans and Escherichia coli after removal of the 5' untranslated leader

Molecular Microbiology

Volumn 22, Issue 2, 1996, Pages 339-355

  Wu, Chi Ju ^a   Janssen, Gary R ^a  

^a MIAMI UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; ESCHERICHIA COLI; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; RNA TRANSLATION; STREPTOMYCES LIVIDANS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; STREPTOMYCES LIVIDANS; STREPTOMYCES VINACEUS;

EID: 0029806263     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1996.00119.x     Document Type: Article

References (71)

1. Adam, R.D. (1991) The biology of Giardia spp. Microbiol Rev 55: 706-732.
2. Adhin, M.R., and van Duin, J. (1990) Scanning model for translational reinitiation in eubacteria. J Mol Biol 213: 811-818.
3. Balakin, A.G., Skripkin, E.A., Shatsky, I.N., and Bogdanov, A.A. (1992) Unusual ribosome binding properties of mRNA encoding bacteriophage λ represser. Nucl Acids Res 20: 563-571.
4. Betlach, M., Friedman, J., Boyer, H.W., and Pfeifer, F. (1984) Characterization of a halobacterial gene affecting bacterioopsin gene expression. Nucl Acids Res 12: 7949-7959.
5. Bibb, M.J., and Janssen, G.R. (1986) Unusual features of transcription and translation of antibiotic resistance genes in antibiotic-producing Streptomyces. In Fifth International Symposium on the Genetics of Industrial Microorganisms. Alacevic, M., Hranueli, D., and Toman, Z. (eds), pp. 309-318.
6. Bibb, M.J., Bibb, M.J., Ward, J.M., and Cohen, S.N. (1985) Nucleotide sequences encoding and promoting expression of three antibiotic resistance genes indigenous to Streptomyces. Mol Gen Genet 199: 26-36.
7. Bibb, M.J., Janssen, G.R., and Ward, J.M. (1986) Cloning and analysis of the promoter region of the erythromycin resistance gene (ermE) of Streptomyces erythraeus. Gene 41: E357-E368.
8. Blanck, A., and Oesterhelt, D. (1987) The halo-opsin gene II. Sequence, primary structure of halorhodopsin, and comparison with bacteriorhodopsin. EMBO J 6: 265-273.
9. Bücheier, X., Uwe, S., Werner, D., and Schirmer, R.H. (1992) Generating compatible translation initiation regions for heterologous gene expression in Escherichia coli by exhaustive periShine-Dalgarno mutagenesis. Human glutathione reductase cDNA as a model. Nucl Acids Res 20: 3127-3133.
10. Buttner, M.J., Fearnley, I.M., and Bibb, M.J. (1987) The agarase gene (dagA) of Streptomyces coelicolor A3 (2): nucleotide sequence and transcriptional analysis. Mol Gen Genet 209: 101-109.
11. Buttner, M.J., Smith, A.M., and Bibb, M.J. (1988) At least three different RNA polymerase holoenzymes direct transcription of the agarase gene (dagA) of Streptomyces coelicolor A3 (2). Cell 52: 599-607.
12. Calogero, R.A., Pon, C.L., Canonaco, M.A., and Gualerzi, C.O. (1988) Selection of the mRNA translation initiation region by Escherichia coli ribosomes. Proc Natl Acad Sci USA 85: 6427-6431.
13. Chen, H., Pomeroy-Cloney, L., Bjerknes, M., Tam, J., and Jay, E. (1994) The influence of adenine-rich motifs in the 3′ portion of the ribosome binding site on human IFN-γ gene expression in Escherichia coli. J Mol Biol 240: 20-27.
14. Christie, G.E., and Calendar, R. (1985) Bacteriophage P2 late promoters II. Comparison of the four late promoter sequences. J Mol Biol 181: 373-382.
15. Deng, W.P., and Nickoloff, U.A. (1992) Site-directed mutagenesis of virtually any plasmid by eliminating a unique site. Anal Biochem 200: 81-88.
16. Dunn, R., McCoy, J., Simsek, M., Majumdar, A., Chang, S.H., Rajbhandary, U.L., and Khorana, H.G. (1981) The bacteriorhodopsion gene. Proc Natl Acad Sci USA 78: 6744-6748.
17. Favaloro, J., Triesman, R., and Kamen, R. (1980) Transcription maps of polyoma virus-specific RNA: analysis by two-dimensional nuclease S1 gel mapping. Meth Enzymol 65: 718-749.
18. Faxen, M., Plumbridge, J., and Isaksson, L.A. (1991) Codon choice and potential complementarity between mRNA downstream of the initiation codon and bases 1471-1480 in 16S ribosomal RNA affects expression of glnS. Nucl Acids Res 19:5247-5251.
19. Gallie, D.R., Sleat, D.E., Watts, J.W., Turner, P.C., and Wilson, T.M.A. (1987) The 5′-leader sequence of tobacco mosaic virus RNA enhances the expression of foreign gene transcripts in vitro and in vivo. Nucl Acids Res 15: 3257-3272.
20. Henikoff, S. (1984) Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28: 351-359.
21. Hopwood, D.A., and Wright, H.M. (1978) Bacterial protoplast fusion: recombination in fused protoplasts of Streptomyces coelicolor. Mol Gen Genet 162: 307-317.
22. Hopwood, D.A., Kieser, T., Wright, H.M., and Bibb, M.J. (1983) Plasmids, recombination and chromosome mapping in Streptomyces lividans 66. J Gen Microbiol 129: 2257-2269.
23. Hopwood, D.A., Bibb, M.J., Chater, K.F., Kieser, T., Bruton, C.J., Kieser, H.M., Lydiate, D.J., Smith, C.P., Ward, J.M., and Schrempf, H. (1985) Genetic Manipulation of Streptomyces: a Laboratory Manual. John Innes Foundation, Norwich, UK.
24. Horinouchi, S., Furuya, K., Nishiyama, M., Suzuki, H., and Beppu, T. (1987) Nucleotide sequence of the streptothricin acetyltransferase gene from Streptomyces lavendulae and its expression in heterologous hosts. J Bacteriol 169: 1929-1937.
25. Horinouchi, S., Suzuki, H., Nishiyama, M., and Beppu, T. (1989) Nucleotide sequence and transcriptional analysis of the Streptomyces griseus gene (afsA) responsible for A-factor biosynthesis. J Bacteriol 171: 1206-1210.
26. Horinouchi, S., Ishizuka, H., and Beppu, T. (1991) Cloning, nucleotide sequence, and transcriptional analysis of the NAD(P)-dependent cholesterol dehydrogenase gene from a Nocardia sp., and its hyperexpression. Appl Environ Microbiol 57: 1386-1393.
27. Hoshiko, S., Nojiri, C., Matsunaga, K., Katsumata, K., Satoh, E., and Nagaoka, K. (1988) Nucleotide sequence of the ribostamycin phosphotransferase gene and of its control region in Streptomyces ribosidificus. Gene 68: 285-296.
28. Hui, A., and deBoer, H.A. (1987) Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli. Proc Natl Acad Sci USA 84: 4762-4766.
29. Ishizuka, H., Horinouchi, S., Kieser, H.M., Hopwood, D.A., and Beppu, T. (1992) A putative two-component regulatory system involved in secondary metabolism in Streptomyces spp. J Bacteriol 174: 7585-7594.
30. Ito, K., Kawakami, K., and Nakamura, Y. (1993) Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional represser and a translational enhancer element. Proc Natl Acad Sci USA 90: 302-306.
31. Ivanov, I.G., Alexandrova, R., Dragulev, B., Leclerc, D., Saraffova, A., Maximova, V., and Abouhaidar, M.G. (1992) Efficiency of the 5′-terminal sequence (Ω) of tobacco mosaic virus RNA for the initiation of eukaryotic gene translation in Escherichia coli. Eur J Biochem 209: 151-156.
32. Jacob, W.F., Santer, M., and Dahlberg, A.E. (1987) A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins. Proc Natl Acad Sci USA 84: 4757-4761.
33. Janssen, G.R. (1993) Eubacterial, archaebacterial, and eucaryotic genes that encode leaderless mRNA. In Industrial Microorganisms: Basic and Applied Molecular Genetics. Baltz, R.H., Hegeman, G.D., and Skatrud, P.L (eds). Washington, DC: American Society for Microbiology, pp. 59-67.
34. Janssen, G.R., and Bibb, M.J. (1988) Tandem promoters transcribe the thiostrepton resistance gene from Streptomyces azureus and viomycin resistance gene from Streptomyces vinaceus. In Biology of Actinomycetes '88. Japan Scientific Societies Press, pp. 374-379.
35. Janssen, G.R., and Bibb, M.J. (1993) Derivatives of pUC18 that have BglII sites flanking a modified multiple cloning site and that retain the ability to identify recombinant clones by visual screening of Escherichia coli colonies. Gene 124: 133-134.
36. Janssen, G.R., Ward, J.M., and Bibb, M.J. (1989) Unusual transcriptional and translational features of the aminoglycoside phosphotransferase gene (aph) from Streptomyces fradiae. Genes Dev 3: 415-429.
37. Jones, III, R.L., Jaskula, J.C., and Janssen, G.R. (1992) In vivo translational start site selection on leaderless mRNA transcribed from the Streptomyces fradiae aph gene. J Bacteriol 174: 4753-4760.
38. Kieser, T., Moss, M.T., Dale, J.W., and Hopwood, D.A. (1986) Cloning and expression of Mycobacterium bovis BCG DNA in Streptomyces lividans. J Bacteriol 168: 72-80.
39. Klock, G., and Hillen, W. (1986) Expression, purification and operator binding of the transposon Tn1721-encoded Tet represser. J Mol Biol 189: 633-641.
40. Kunkel, T.A., Roberts, J.D., and Zakour, R.A. (1987) Rapid and efficient site-specific mutagenesis without phenotypic selection. Meth Enzymol 154: 367-382.
41. Li, Y., Dosch, D.C., Strohl, W.R., and Floss, H.G. (1990) Nucleotide sequence and transcriptional analysis of the nosiheptide-resistance gene from Streptomyces actuosus. Gene 91: 9-17.
42. Linn, T., and St Pierre, T. (1990) Improved vector system for constructing transcriptional fusion that ensures independent translation of lacZ. J Bacteriol 172: 1077-1084.
43. Loechel, S., Inamine, J.M., and Hu, P. (1991) A novel translation initiation region from Mycoplasma genitalium that functions in Escherichia coli. Nucl Acids Res 19: 6905-6911.
44. Lopez, P., Martinez, S., Diaz, A., Espinosa, M., and Lacks, S.A. (1989) Characterization of the polA gene of Streptococcus pneumoniae and comparison of the DNA polymerase I it encodes to homologous enzymes from Escherichia coli and phage T7. J Biol Chem 264: 4255-4263.
45. Lopez-Cabrera, M., Perez-Gonzalez, A., Heinzel, P., Piepersberg, W., and Jimenez, A. (1989) Isolation and nucleotide sequencing of an aminocyclitol acetyltransferase gene from Streptomyces rimosus forma paromomycinus. J Bacteriol 171: 321-328.
46. Malan, T.P., and McClure, W.R. (1984) Dual promoter control of the Escherichia coli lactose operon. Cell 39: 173-180.
47. Maniatis, T., Fritsch, E.J., and Sambrook, J. (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
48. Melançon, P., Leclerc, D., Destroismaisons, N., and Brakier-Gingras, L. (1990) The anti-Shine-Dalgarno region in Escherichia coli 16S ribosomal RNA is not essential for the correct selection of translational starts. Biochemistry 29: 3402-3407.
49. Montoya, J., Ojala, D., and Attardi, G. (1981) Distinctive features of the 5′-terminal sequences of the human mitochondrial mRNAs. Nature 290: 465-470.
50. Murray, I.A., Gil, J.A., Hopwood, D.A., and Shaw, W.V. (1989) Nucleotide sequence of the chloramphenicol acetyltransferase gene of Streptomyces acrimycini. Gene 85: 283-291.
51. 32 synthesis during the heat shock response of Escherichia coli. Proc Natl Acad Sci USA 88: 10515-10519.
52. Okanishi, M., Suzuki, K., and Umezawa, H. (1974) Formation and reversion of streptomycete protoplasts: cultural conditions and morphological study. J Gen Microbiol 80: 389-400.
53. Olins, P.O., and Rangwala, S.H. (1989) A novel sequence element derived from bacteriophage T7 mRNA acts as an enhancer of translation of the lacZ gene in Escherichia coli. J Biol Chem 264: 16973-16976.
54. Olins, P.O., Devine, C.S., Rangwala, S.H., and Kavka, K.S. (1988) The T7 phage gene 10 leader RNA, a ribosome-binding site that dramatically enhances the expression of foreign genes in Escherichia coli. Gene 73: 227-235.
55. Ptashne, M., Backman, K., Humayum, M.Z., Jeffrey, A., Maurer, R., Meyer, B., and Sauer, R.T. (1976) Autoregulation and function of a repressor in bacteriophage lambda. Science 194: 156-161.
56. Sabelnikov, A.G., Greenberg, B., and Lacks, S.A. (1995) An extended -10 promoter alone directs transcription of the DpnII operon of Streptococcus pneumoniae. J Mol Biol 250: 144-155.
57. Salauze, D., and Davies, J. (1992) Transcriptional mapping of the promoter of the aminoglycoside acetyltransferase gene (aacC9) of neomycin-producing Micromonospora chalcea. Res Microbiol 101: 143-148.
58. Scherer, G.F.E., Walkinshaw, M.D., Arnott, S., and Morré, D.J. (1980) The ribosome binding sites recognized by E. coli ribosomes have regions with signal character in both the leader and protein coding segments. Nucl Acids Res 8: 3895-3917.
59. Schottel, J.L., Bibb, M.J., and Cohen, S.N. (1981) Cloning and expression in Streptomyces lividans of antibiotic resistance genes derived from Escherichia coli. J Bacteriol 146: 360-368.
60. Shean, C.S., and Gottesman, M.E. (1992) Translation of the prophage λ cI transcript. Cell 70: 513-522.
61. Shine, J., and Dalgarno, L. (1974) The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplet and ribosome binding sites. Proc Natl Acad Sci USA 71: 1342-1346.
62. Sprengart, M.L., Fatscher, H.P., and Fuchs, E. (1990) The initiation of translation in E. coli: apparent base paring between the 16S rRNA and downstream sequences of the mRNA. Nucl Acids Res 18: 1719-1723.
63. Sprengart, M.L., Fuchs, E., and Porter, A.G. (1996) The downstream box: an efficient and independent translation signal in Escherichia coli. EMBO J 15: 665-674.
64. Stein, D.S., Kendall, K.J., and Cohen, S.N. (1989) Identification and analysis of transcriptional regulatory signals for the kil and kor loci of Streptomyces plasmid pIJ101. J Bacteriol 171: 5768-5775.
65. Steitz, J.A., and Jakes, K. (1975) How ribosomes select initiator regions in mRNA: base pair formation between the 3′ terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. Proc Natl Acad Sci USA 72: 4734-4738.
66. Suzuki, Y., and Yamada, T. (1988) The nucleotide sequence of the 16S RNA gene from Streptomyces lividans TK21. Nucl Acids Res 16: 370.
67. Thompson, C.J., Ward, J.M., and Hopwood, D.A. (1982) Cloning of antibiotic resistance and nutritional genes in Streptomyces. J Bacteriol 151: 668-677.
68. Ward, J.M., Janssen, G.R., Kieser, T., Bibb, M.J., Buttner, M.J., and Bibb, M.J. (1986) Construction and characterization of a series of multi-copy promoter-probe plasmid vectors for Streptomyces using the aminoglycoside phosphotransferase gene from Tn5 as indicator. Mol Gen Genet 203: 468-478.
69. Wu, P.C., Srinivasan, K.V., and Kendrick, K.E. (1995) Regulated expression of the histidase structural gene in Streptomyces griseus. J Bacteriol 177: 854-857.
70. Xiong, X., de la Cruz, N., and Reznikoff, W.S. (1991) Downstream deletion analysis of the lac promoter. J Bacteriol 173: 4570-4577.
71. Zell, R., and Fritz, H.-J. (1987) DNA mismatch-repair in Escherichia coli counteracting the hydrolytic deamination of 5′ methyl-cytosin residues. EMBO J 6 (6): 1809-1815.