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Volumn 7, Issue 2, 2012, Pages

LAL regulators SCO0877 and SCO7173 as pleiotropic modulators of phosphate starvation response and actinorhodin biosynthesis in Streptomyces coelicolor

Author keywords

[No Author keywords available]

Indexed keywords

ACTINORHODINE; GENOMIC DNA; LARGE ATP BINDING REGULATOR; PHOSPHATE; TRANSCRIPTION FACTOR LUXR; TRANSCRIPTOME; UNCLASSIFIED DRUG; ANTHRAQUINONE DERIVATIVE; BACTERIAL PROTEIN; LUXR AUTOINDUCER BINDING PROTEINS; REPRESSOR PROTEIN; TRANSACTIVATOR PROTEIN;

EID: 84857399093     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0031475     Document Type: Article
Times cited : (30)

References (54)
  • 1
    • 0029945534 scopus 로고    scopus 로고
    • The regulation of antibiotic production in Streptomyces coelicolor A3(2)
    • Bibb M, (1996) The regulation of antibiotic production in Streptomyces coelicolor A3(2). Microbiology 142: 1335-1344.
    • (1996) Microbiology , vol.142 , pp. 1335-1344
    • Bibb, M.1
  • 2
    • 0002435032 scopus 로고
    • Regulation and integration of antibiotic production and morphological differentiation in Streptomyces spp
    • In: Piggot P, Moran CP, Youngman P, editors, American Society for Microbiology, Washington, DC
    • Champness WC, Chater KF, (1994) Regulation and integration of antibiotic production and morphological differentiation in Streptomyces spp. In: Piggot P, Moran CP, Youngman P, editors. Regulation of bacterial differentiation pp. 61-93 American Society for Microbiology, Washington, DC.
    • (1994) Regulation of Bacterial Differentiation , pp. 61-93
    • Champness, W.C.1    Chater, K.F.2
  • 4
    • 0032879027 scopus 로고    scopus 로고
    • Forty years of genetics with Streptomyces: From in vivo through in vitro to in silico
    • Hopwood DA, (1999) Forty years of genetics with Streptomyces: From in vivo through in vitro to in silico. Microbiology 145: 2183-2202.
    • (1999) Microbiology , vol.145 , pp. 2183-2202
    • Hopwood, D.A.1
  • 5
    • 0031887807 scopus 로고    scopus 로고
    • Maltose/maltodextrin system of Escherichia coli: transport, metabolism, and regulation
    • Boos W, Shuman H, (1998) Maltose/maltodextrin system of Escherichia coli: transport, metabolism, and regulation. Microbiol Mol Biol Rev 62: 204-229.
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 204-229
    • Boos, W.1    Shuman, H.2
  • 6
    • 0001607723 scopus 로고
    • Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
    • Walker JE, Saraste M, Runswick MJ, Gay NJ, (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1: 945-951.
    • (1982) EMBO J , vol.1 , pp. 945-951
    • Walker, J.E.1    Saraste, M.2    Runswick, M.J.3    Gay, N.J.4
  • 7
    • 0035031304 scopus 로고    scopus 로고
    • Characterization and analysis of the PikD regulatory factor in the pikromycin biosynthetic pathway of Streptomyces venezuelae
    • Wilson DJ, Xue Y, Reynolds KE, Sherman DH, (2001) Characterization and analysis of the PikD regulatory factor in the pikromycin biosynthetic pathway of Streptomyces venezuelae. J Bacteriol 183: 3468-3475.
    • (2001) J Bacteriol , vol.183 , pp. 3468-3475
    • Wilson, D.J.1    Xue, Y.2    Reynolds, K.E.3    Sherman, D.H.4
  • 8
    • 0029872079 scopus 로고    scopus 로고
    • Organisation of the biosynthetic gene cluster for rapamycin in Streptomyces hygroscopicus: analysis of the enzymatic domains in the modular polyketide synthase
    • Aparicio JF, Molnár I, Schwecke T, König A, Haydock SF, et al. (1996) Organisation of the biosynthetic gene cluster for rapamycin in Streptomyces hygroscopicus: analysis of the enzymatic domains in the modular polyketide synthase. Gene 169: 9-16.
    • (1996) Gene , vol.169 , pp. 9-16
    • Aparicio, J.F.1    Molnár, I.2    Schwecke, T.3    König, A.4    Haydock, S.F.5
  • 9
    • 1342304165 scopus 로고    scopus 로고
    • In vivo analysis of the regulatory genes in the nystatin biosynthetic gene cluster of Streptomyces noursei ATCC 11455 reveals their differential control over antibiotic biosynthesis
    • Sekurova ON, Brautaset T, Sletta H, Borgos SEF, Jakobsen OM, et al. (2004) In vivo analysis of the regulatory genes in the nystatin biosynthetic gene cluster of Streptomyces noursei ATCC 11455 reveals their differential control over antibiotic biosynthesis. J Bacteriol 186: 1345-1354.
    • (2004) J Bacteriol , vol.186 , pp. 1345-1354
    • Sekurova, O.N.1    Brautaset, T.2    Sletta, H.3    Borgos, S.E.F.4    Jakobsen, O.M.5
  • 10
    • 9244222162 scopus 로고    scopus 로고
    • Analysis and manipulation of amphotericin biosynthetic genes by means of modified phage KC515 transduction techniques
    • Carmody M, Byrne B, Murphy B, Breen C, Lynch S, et al. (2004) Analysis and manipulation of amphotericin biosynthetic genes by means of modified phage KC515 transduction techniques. Gene 343: 107-115.
    • (2004) Gene , vol.343 , pp. 107-115
    • Carmody, M.1    Byrne, B.2    Murphy, B.3    Breen, C.4    Lynch, S.5
  • 11
    • 47249110302 scopus 로고    scopus 로고
    • Biosynthetic engineering of polyene macrolides towards generation of improved antifungal and antiparasitic agents
    • Caffrey P, Aparicio JF, Malpartida F, Zotchev SB, (2008) Biosynthetic engineering of polyene macrolides towards generation of improved antifungal and antiparasitic agents. Curr Top Med Chem 8: 639-653.
    • (2008) Curr Top Med Chem , vol.8 , pp. 639-653
    • Caffrey, P.1    Aparicio, J.F.2    Malpartida, F.3    Zotchev, S.B.4
  • 12
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRis JL, Iyer VR, Brown PO, (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRis, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 13
    • 0033145727 scopus 로고    scopus 로고
    • A subfamily of MalT-related ATP-dependent regulators in the LuxR family
    • De Schrijver A, De Mot R, (1999) A subfamily of MalT-related ATP-dependent regulators in the LuxR family. Microbiology 145: 1287-1288.
    • (1999) Microbiology , vol.145 , pp. 1287-1288
    • De Schrijver, A.1    De Mot, R.2
  • 15
    • 0038335217 scopus 로고    scopus 로고
    • Genomic DNA standards for gene expression profiling in Mycobacterium tuberculosis
    • Talaat AM, Howard ST, Hale W, Lyons R, Garner H, et al. (2002) Genomic DNA standards for gene expression profiling in Mycobacterium tuberculosis. Nucleic Acids Res 30: e104.
    • (2002) Nucleic Acids Res , vol.30
    • Talaat, A.M.1    Howard, S.T.2    Hale, W.3    Lyons, R.4    Garner, H.5
  • 16
    • 34547144162 scopus 로고    scopus 로고
    • Genome-wide transcriptomic and proteomic analysis of the primary response to phosphate limitation in Streptomyces coelicolor M145 and in a ΔphoP mutant
    • Rodríguez-García A, Barreiro C, Santos-Beneit F, Sola-Landa A, Martín JF, (2007) Genome-wide transcriptomic and proteomic analysis of the primary response to phosphate limitation in Streptomyces coelicolor M145 and in a ΔphoP mutant. Proteomics 7: 2410-2429.
    • (2007) Proteomics , vol.7 , pp. 2410-2429
    • Rodríguez-García, A.1    Barreiro, C.2    Santos-Beneit, F.3    Sola-Landa, A.4    Martín, J.F.5
  • 17
    • 15744383448 scopus 로고    scopus 로고
    • Regulation of secondary metabolism in streptomycetes
    • Bibb MJ, (2005) Regulation of secondary metabolism in streptomycetes. Curr Opin Microbiol 8: 208-215.
    • (2005) Curr Opin Microbiol , vol.8 , pp. 208-215
    • Bibb, M.J.1
  • 18
    • 0034816770 scopus 로고    scopus 로고
    • RNA polymerase sigma factor that blocks morphological differentiation by Streptomyces coelicolor
    • Gehring AM, Yoo NJ, Losick R, (2001) RNA polymerase sigma factor that blocks morphological differentiation by Streptomyces coelicolor. J Bacteriol 183: 5991-5996.
    • (2001) J Bacteriol , vol.183 , pp. 5991-5996
    • Gehring, A.M.1    Yoo, N.J.2    Losick, R.3
  • 19
    • 33845425005 scopus 로고    scopus 로고
    • Identification of a gene negatively affecting antibiotic production and morphological differentiation in Streptomyces coelicolor A3(2)
    • Li W, Ying X, Guo Y, Yu Z, Zhou X, et al. (2006) Identification of a gene negatively affecting antibiotic production and morphological differentiation in Streptomyces coelicolor A3(2). J Bacteriol 188: 8368-8375.
    • (2006) J Bacteriol , vol.188 , pp. 8368-8375
    • Li, W.1    Ying, X.2    Guo, Y.3    Yu, Z.4    Zhou, X.5
  • 20
    • 3843091511 scopus 로고    scopus 로고
    • The SapB morphogen is a lantibiotic-like peptide derived from the product of the developmental gene ramS in Streptomyces coelicolor
    • Kodani S, Hudson ME, Durrant MC, Buttner MJ, Nodwell JR, et al. (2004) The SapB morphogen is a lantibiotic-like peptide derived from the product of the developmental gene ramS in Streptomyces coelicolor. Proc Natl Acad Sci USA 101: 11448-11453.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11448-11453
    • Kodani, S.1    Hudson, M.E.2    Durrant, M.C.3    Buttner, M.J.4    Nodwell, J.R.5
  • 21
    • 0033797134 scopus 로고    scopus 로고
    • WhiA, a protein of unknown function conserved among gram-positive bacteria, is essential for sporulation in Streptomyces coelicolor A3(2)
    • Aínsa JA, Ryding NJ, Hartley N, Findlay KC, Bruton CJ, et al. (2000) WhiA, a protein of unknown function conserved among gram-positive bacteria, is essential for sporulation in Streptomyces coelicolor A3(2). J Bacteriol 182: 5470-5478.
    • (2000) J Bacteriol , vol.182 , pp. 5470-5478
    • Aínsa, J.A.1    Ryding, N.J.2    Hartley, N.3    Findlay, K.C.4    Bruton, C.J.5
  • 22
    • 77956329728 scopus 로고    scopus 로고
    • Quantitative proteome analysis of Streptomyces coelicolor nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures
    • Manteca A, Jung HR, Schwämmle V, Jensen ON, Sanchez J, (2010) Quantitative proteome analysis of Streptomyces coelicolor nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures. J Proteome Res 9: 4801-4811.
    • (2010) J Proteome Res , vol.9 , pp. 4801-4811
    • Manteca, A.1    Jung, H.R.2    Schwämmle, V.3    Jensen, O.N.4    Sanchez, J.5
  • 23
    • 40949165022 scopus 로고    scopus 로고
    • Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2)
    • Lian W, Jayapal KP, Charaniya S, Mehra S, Glod F, et al. (2008) Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2). BMC Genomics 9: 56.
    • (2008) BMC Genomics , vol.9 , pp. 56
    • Lian, W.1    Jayapal, K.P.2    Charaniya, S.3    Mehra, S.4    Glod, F.5
  • 24
    • 33845199230 scopus 로고    scopus 로고
    • The twin-arginine translocation pathway is a major route of protein export in Streptomyces coelicolor
    • Widdick DA, Dilks K, Chandra G, Bottrill A, Naldrett M, et al. (2006) The twin-arginine translocation pathway is a major route of protein export in Streptomyces coelicolor. Proc Natl Acad Sci USA 103: 17927-17932.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 17927-17932
    • Widdick, D.A.1    Dilks, K.2    Chandra, G.3    Bottrill, A.4    Naldrett, M.5
  • 25
    • 0038284769 scopus 로고    scopus 로고
    • The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in Streptomyces lividans
    • Sola-Landa A, Moura RS, Martín JF, (2003) The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in Streptomyces lividans. Proc Natl Acad Sci USA 100: 6133-6138.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 6133-6138
    • Sola-Landa, A.1    Moura, R.S.2    Martín, J.F.3
  • 26
    • 19944370498 scopus 로고    scopus 로고
    • Binding of PhoP to promoters of phosphate-regulated genes in Streptomyces coelicolor: identification of PHO boxes
    • Sola-Landa A, Rodríguez-García A, Franco-Domínguez E, Martín JF, (2005) Binding of PhoP to promoters of phosphate-regulated genes in Streptomyces coelicolor: identification of PHO boxes. Mol Microbiol 56: 1373-1385.
    • (2005) Mol Microbiol , vol.56 , pp. 1373-1385
    • Sola-Landa, A.1    Rodríguez-García, A.2    Franco-Domínguez, E.3    Martín, J.F.4
  • 27
    • 33847661977 scopus 로고    scopus 로고
    • The two-component phoR-phoP system of Streptomyces natalensis: Inactivation or deletion of phoP reduces the negative phosphate regulation of pimaricin biosynthesis
    • Mendes MV, Tunca S, Antón N, Recio E, Sola-Landa A, et al. (2007) The two-component phoR-phoP system of Streptomyces natalensis: Inactivation or deletion of phoP reduces the negative phosphate regulation of pimaricin biosynthesis. Metab Eng 9: 217-227.
    • (2007) Metab Eng , vol.9 , pp. 217-227
    • Mendes, M.V.1    Tunca, S.2    Antón, N.3    Recio, E.4    Sola-Landa, A.5
  • 28
    • 30744468390 scopus 로고    scopus 로고
    • Transcriptional studies and regulatory interactions between the phoR-phoP operon and the phoU, mtpA, and ppk genes of Streptomyces lividans TK24
    • Ghorbel S, Kormanec J, Artus A, Virolle MJ, (2006) Transcriptional studies and regulatory interactions between the phoR-phoP operon and the phoU, mtpA, and ppk genes of Streptomyces lividans TK24. J Bacteriol 188: 677-686.
    • (2006) J Bacteriol , vol.188 , pp. 677-686
    • Ghorbel, S.1    Kormanec, J.2    Artus, A.3    Virolle, M.J.4
  • 29
    • 62949243440 scopus 로고    scopus 로고
    • Crosstalk between two global regulators in Streptomyces: PhoP and AfsR interact in the control of afsS, pstS and phoRP transcription
    • Santos-Beneit F, Rodríguez-García A, Sola-Landa A, Martín JF, (2009) Crosstalk between two global regulators in Streptomyces: PhoP and AfsR interact in the control of afsS, pstS and phoRP transcription. Mol Microbiol 72: 53-68.
    • (2009) Mol Microbiol , vol.72 , pp. 53-68
    • Santos-Beneit, F.1    Rodríguez-García, A.2    Sola-Landa, A.3    Martín, J.F.4
  • 30
    • 0027971383 scopus 로고
    • DNA sequence and functions of the actVI region of the actinorhodin biosynthetic gene cluster of Streptomyces coelicolor A3(2)
    • Fernández-Moreno MA, Martínez E, Caballero JL, Ichinose K, Hopwood DA, et al. (1994) DNA sequence and functions of the actVI region of the actinorhodin biosynthetic gene cluster of Streptomyces coelicolor A3(2). J Biol Chem 269: 24854-24863.
    • (1994) J Biol Chem , vol.269 , pp. 24854-24863
    • Fernández-Moreno, M.A.1    Martínez, E.2    Caballero, J.L.3    Ichinose, K.4    Hopwood, D.A.5
  • 31
    • 0028171561 scopus 로고
    • afsR2: a previously undetected gene encoding a 63-amino-acid protein that stimulates antibiotic production in Streptomyces lividans
    • Vögtli M, Chang PC, Cohen SN, (1994) afsR2: a previously undetected gene encoding a 63-amino-acid protein that stimulates antibiotic production in Streptomyces lividans. Mol Microbiol 14: 643-653.
    • (1994) Mol Microbiol , vol.14 , pp. 643-653
    • Vögtli, M.1    Chang, P.C.2    Cohen, S.N.3
  • 32
    • 0029762312 scopus 로고    scopus 로고
    • afsR is a pleiotropic but conditionally required regulatory gene for antibiotic production in Streptomyces coelicolor A3(2)
    • Floriano B, Bibb M, (1996) afsR is a pleiotropic but conditionally required regulatory gene for antibiotic production in Streptomyces coelicolor A3(2). Mol Microbiol 21: 385-396.
    • (1996) Mol Microbiol , vol.21 , pp. 385-396
    • Floriano, B.1    Bibb, M.2
  • 33
    • 33846678395 scopus 로고    scopus 로고
    • A cryptic type I polyketide synthase (cpk) gene cluster in Streptomyces coelicolor A3(2)
    • Pawlik K, Kotowska M, Chater KF, Kuczek K, Takano E, (2007) A cryptic type I polyketide synthase (cpk) gene cluster in Streptomyces coelicolor A3(2). Arch Microbiol 187: 87-99.
    • (2007) Arch Microbiol , vol.187 , pp. 87-99
    • Pawlik, K.1    Kotowska, M.2    Chater, K.F.3    Kuczek, K.4    Takano, E.5
  • 34
    • 33748999287 scopus 로고    scopus 로고
    • Regulation of ppk expression and in vivo function of Ppk in Streptomyces lividans TK24
    • Ghorbel S, Smirnov A, Chouayekh H, Esperandio B, Esnault C, et al. (2006) Regulation of ppk expression and in vivo function of Ppk in Streptomyces lividans TK24. J Bacteriol 188: 6269-6276.
    • (2006) J Bacteriol , vol.188 , pp. 6269-6276
    • Ghorbel, S.1    Smirnov, A.2    Chouayekh, H.3    Esperandio, B.4    Esnault, C.5
  • 35
    • 0033537959 scopus 로고    scopus 로고
    • The biosynthetic gene cluster for the 26-membered ring polyene macrolide pimaricin: A new polyketide synthase organization encoded by two subclusters separated by functionalization genes
    • Aparicio JF, Colina AJ, Ceballos E, Martín JF, (1999) The biosynthetic gene cluster for the 26-membered ring polyene macrolide pimaricin: A new polyketide synthase organization encoded by two subclusters separated by functionalization genes. J Biol Chem 274: 10133-10139.
    • (1999) J Biol Chem , vol.274 , pp. 10133-10139
    • Aparicio, J.F.1    Colina, A.J.2    Ceballos, E.3    Martín, J.F.4
  • 37
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL, (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97: 6640-6645.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 38
    • 0037452723 scopus 로고    scopus 로고
    • PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin
    • Gust B, Challis GL, Fowler K, Kieser T, Chater KF, (2003) PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin. Proc Natl Acad Sci USA 100: 1541-1546.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 1541-1546
    • Gust, B.1    Challis, G.L.2    Fowler, K.3    Kieser, T.4    Chater, K.F.5
  • 39
    • 0034069326 scopus 로고    scopus 로고
    • Identification of a gene cluster for antibacterial polyketide-derived antibiotic biosynthesis in the nystatin producer Streptomyces noursei ATCC 11455
    • Zotchev S, Haugan K, Sekurova O, Sletta H, Ellingsen TE, et al. (2000) Identification of a gene cluster for antibacterial polyketide-derived antibiotic biosynthesis in the nystatin producer Streptomyces noursei ATCC 11455. Microbiology 146: 611-619.
    • (2000) Microbiology , vol.146 , pp. 611-619
    • Zotchev, S.1    Haugan, K.2    Sekurova, O.3    Sletta, H.4    Ellingsen, T.E.5
  • 40
    • 0025234543 scopus 로고
    • Nutritional control of actinorhodin production by Streptomyces coelicolor A3(2): Suppresive effects of nitrogen and phosphate
    • Doull JL, Vining LC, (1990) Nutritional control of actinorhodin production by Streptomyces coelicolor A3(2): Suppresive effects of nitrogen and phosphate. Appl Microbiol Biotechnol 32: 449-454.
    • (1990) Appl Microbiol Biotechnol , vol.32 , pp. 449-454
    • Doull, J.L.1    Vining, L.C.2
  • 42
    • 33645231502 scopus 로고    scopus 로고
    • An efficient gene transfer system for the pimaricin producer Streptomyces natalensis
    • Enríquez LL, Mendes MV, Antón N, Tunca S, Guerra SM, et al. (2006): An efficient gene transfer system for the pimaricin producer Streptomyces natalensis. FEMS Microbiol Lett 257: 312-318.
    • (2006) FEMS Microbiol Lett , vol.257 , pp. 312-318
    • Enríquez, L.L.1    Mendes, M.V.2    Antón, N.3    Tunca, S.4    Guerra, S.M.5
  • 43
    • 27244455921 scopus 로고    scopus 로고
    • Natural and synthetic tetracycline-inducible promoters for use in the antibiotic-producing bacteria Streptomyces
    • Rodríguez-García A, Combes P, Pérez-Redondo R, Smith MC, Smith MC, (2005) Natural and synthetic tetracycline-inducible promoters for use in the antibiotic-producing bacteria Streptomyces. Nucleic Acids Res 33: e87.
    • (2005) Nucleic Acids Res , vol.33
    • Rodríguez-García, A.1    Combes, P.2    Pérez-Redondo, R.3    Smith, M.C.4    Smith, M.C.5
  • 44
    • 34948839957 scopus 로고    scopus 로고
    • PimM, a PAS domain positive regulator of pimaricin biosynthesis in Streptomyces natalensis
    • Antón N, Santos-Aberturas J, Mendes MV, Guerra SM, Martín JF, et al. (2007) PimM, a PAS domain positive regulator of pimaricin biosynthesis in Streptomyces natalensis. Microbiology 53: 3174-3183.
    • (2007) Microbiology , vol.53 , pp. 3174-3183
    • Antón, N.1    Santos-Aberturas, J.2    Mendes, M.V.3    Guerra, S.M.4    Martín, J.F.5
  • 45
    • 2442571046 scopus 로고    scopus 로고
    • Microarray results improve significantly as hybridization approaches equilibrium
    • Sartor M, Schwanekamp J, Halbleib D, Mohamed I, Karyala S, et al. (2004) Microarray results improve significantly as hybridization approaches equilibrium. Biotechniques 36: 790-796.
    • (2004) Biotechniques , vol.36 , pp. 790-796
    • Sartor, M.1    Schwanekamp, J.2    Halbleib, D.3    Mohamed, I.4    Karyala, S.5
  • 46
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • Smyth GK, Speed TP, (2003) Normalization of cDNA microarray data. Methods 31: 265-273.
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.K.1    Speed, T.P.2
  • 47
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Article 3
    • Smyth GK, (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article 3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 48
    • 25444446813 scopus 로고    scopus 로고
    • Evaluation of normalization methods for cDNA microarray data by k-NN classification
    • Wu W, Xing EP, Myers C, Mian IS, Bissell MJ, (2005) Evaluation of normalization methods for cDNA microarray data by k-NN classification. BMC Bioinformatics 6: 191.
    • (2005) BMC Bioinformatics , vol.6 , pp. 191
    • Wu, W.1    Xing, E.P.2    Myers, C.3    Mian, I.S.4    Bissell, M.J.5
  • 49
    • 30844434821 scopus 로고    scopus 로고
    • A framework to analyze multiple time series data: A case study with Streptomyces coelicolor
    • Mehra S, Lian W, Jayapal KP, Charaniya SP, Sherman DH, et al. (2006) A framework to analyze multiple time series data: A case study with Streptomyces coelicolor. J Ind Microbiol Biotechnol 33: 159-172.
    • (2006) J Ind Microbiol Biotechnol , vol.33 , pp. 159-172
    • Mehra, S.1    Lian, W.2    Jayapal, K.P.3    Charaniya, S.P.4    Sherman, D.H.5
  • 50
    • 18744369640 scopus 로고    scopus 로고
    • Use of within-array replicate spots for assessing differential expression in microarray experiments
    • Smyth GK, Michaud J, Scott HS, (2005) Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 21: 2067-2075.
    • (2005) Bioinformatics , vol.21 , pp. 2067-2075
    • Smyth, G.K.1    Michaud, J.2    Scott, H.S.3
  • 52
    • 4344571581 scopus 로고    scopus 로고
    • Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
    • Breitling R, Armengaud P, Amtmann A, Herzyk P, (2004) Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett 573: 83-92.
    • (2004) FEBS Lett , vol.573 , pp. 83-92
    • Breitling, R.1    Armengaud, P.2    Amtmann, A.3    Herzyk, P.4
  • 53
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method
    • Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method. Methods 25: 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 54
    • 79953201151 scopus 로고    scopus 로고
    • Molecular control of polyene macrolide biosynthesis: direct binding of the regulator PimM to eight promoters of pimaricin genes and identification of binding boxes
    • Santos-Aberturas J, Vicente CM, Guerra SM, Payero TD, Martín JF, et al. (2011) Molecular control of polyene macrolide biosynthesis: direct binding of the regulator PimM to eight promoters of pimaricin genes and identification of binding boxes. J Biol Chem 286: 9150-9161.
    • (2011) J Biol Chem , vol.286 , pp. 9150-9161
    • Santos-Aberturas, J.1    Vicente, C.M.2    Guerra, S.M.3    Payero, T.D.4    Martín, J.F.5


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