메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2)

Author keywords

[No Author keywords available]

Indexed keywords

ACTINORHODINE; AFSS PROTEIN; BACTERIAL PROTEIN; CARRIER PROTEIN; DNA; MEMBRANE PROTEIN; NITROGEN; PHOSPHATE; PRODIGIOSIN; REGULATOR PROTEIN; SIGMA FACTOR; SULFATE; TRANSCRIPTOME; UNCLASSIFIED DRUG; ANTHRAQUINONE DERIVATIVE; ANTIINFECTIVE AGENT; GLUTAMATE AMMONIA LIGASE; THIOSULFATE SULFURTRANSFERASE;

EID: 40949165022     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-56     Document Type: Article
Times cited : (46)

References (52)
  • 1
    • 0345492332 scopus 로고    scopus 로고
    • Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species
    • 304118 12970466 10.1073/pnas.1934677100
    • Challis GL Hopwood DA Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species Proc Natl Acad Sci USA 2003, 100(Suppl 2):14555-14561 304118 12970466 10.1073/pnas.1934677100
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.SUPPL. 2 , pp. 14555-14561
    • Challis, G.L.1    Hopwood, D.A.2
  • 2
    • 0035723427 scopus 로고    scopus 로고
    • SigB, an RNA polymerase sigma factor required for osmoprotection and proper differentiation of Streptomyces coelicolor
    • 10.1046/j.1365-2958.2001.02622.x 11679079
    • Cho YH Lee EJ Ahn BE Roe JH SigB, an RNA polymerase sigma factor required for osmoprotection and proper differentiation of Streptomyces coelicolor Mol Microbiol 2001, 42:205-214 10.1046/ j.1365-2958.2001.02622.x 11679079
    • (2001) Mol Microbiol , vol.42 , pp. 205-214
    • Cho, Y.H.1    Lee, E.J.2    Ahn, B.E.3    Roe, J.H.4
  • 3
    • 0034816770 scopus 로고    scopus 로고
    • RNA polymerase sigma factor that blocks morphological differentiation by Streptomyces coelicolor
    • 99678 11566999 10.1128/JB.183.20.5991-5996.2001
    • Gehring AM Yoo NJ Losick R RNA polymerase sigma factor that blocks morphological differentiation by Streptomyces coelicolor J Bacteriol 2001, 183:5991-5996 99678 11566999 10.1128/JB.183.20.5991-5996.2001
    • (2001) J Bacteriol , vol.183 , pp. 5991-5996
    • Gehring, A.M.1    Yoo, N.J.2    Losick, R.3
  • 4
    • 0242692671 scopus 로고    scopus 로고
    • Multiple sigma subunits and the partitioning of bacterial transcription space
    • 10.1146/annurev.micro.57.030502.090913 14527287
    • Gruber TM Gross CA Multiple sigma subunits and the partitioning of bacterial transcription space Annu Rev Microbiol 2003, 57:441-466 10.1146/annurev.micro.57.030502.090913 14527287
    • (2003) Annu Rev Microbiol , vol.57 , pp. 441-466
    • Gruber, T.M.1    Gross, C.A.2
  • 5
    • 10044280434 scopus 로고    scopus 로고
    • Regulation of σB by an anti- and an anti-anti-sigma factor in Streptomyces coelicolor in response to osmotic stress
    • 532406 15576799 10.1128/JB.186.24.8490-8498.2004
    • Lee EJ Cho YH Kim HS Ahn BE Roe JH Regulation of σB by an anti- and an anti-anti-sigma factor in Streptomyces coelicolor in response to osmotic stress J Bacteriol 2004, 186:8490-8498 532406 15576799 10.1128/ JB.186.24.8490-8498.2004
    • (2004) J Bacteriol , vol.186 , pp. 8490-8498
    • Lee, E.J.1    Cho, Y.H.2    Kim, H.S.3    Ahn, B.E.4    Roe, J.H.5
  • 6
    • 23844442155 scopus 로고    scopus 로고
    • A master regulator sigma governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor
    • 10.1111/j.1365-2958.2005.04761.x 16101999
    • Lee EJ Karoonuthaisiri N Kim HS Park JH Cha CJ Kao CM Roe JH A master regulator sigma governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor Mol Microbiol 2005, 57:1252-1264 10.1111/ j.1365-2958.2005.04761.x 16101999
    • (2005) Mol Microbiol , vol.57 , pp. 1252-1264
    • Lee, E.J.1    Karoonuthaisiri, N.2    Kim, H.S.3    Park, J.H.4    Cha, C.J.5    Kao, C.M.6    Roe, J.H.7
  • 7
    • 0032898961 scopus 로고    scopus 로고
    • Evidence that the extracytoplasmic function sigma factor σE is required for normal cell wall structure in Streptomyces coelicolor A3(2)
    • 103550 9864331
    • Paget MS Chamberlin L Atrih A Foster SJ Buttner MJ Evidence that the extracytoplasmic function sigma factor σE is required for normal cell wall structure in Streptomyces coelicolor A3(2) J Bacteriol 1999, 181:204-211 103550 9864331
    • (1999) J Bacteriol , vol.181 , pp. 204-211
    • Paget, M.S.1    Chamberlin, L.2    Atrih, A.3    Foster, S.J.4    Buttner, M.J.5
  • 8
    • 2442673898 scopus 로고    scopus 로고
    • Differential production of two antibiotics of Streptomyces coelicolor A3(2), actinorhodin and undecylprodigiosin, upon salt stress conditions
    • 10.1007/s00203-004-0669-1 15054568
    • Sevcikova B Kormanec J Differential production of two antibiotics of Streptomyces coelicolor A3(2), actinorhodin and undecylprodigiosin, upon salt stress conditions Arch Microbiol 2004, 181:384-389 10.1007/ s00203-004-0669-1 15054568
    • (2004) Arch Microbiol , vol.181 , pp. 384-389
    • Sevcikova, B.1    Kormanec, J.2
  • 10
    • 0025234543 scopus 로고
    • Nutritional control of actinorhodin production by Streptomyces coelicolor A3(2): Suppressive effects of nitrogen and phosphate
    • 10.1007/BF00903781 1366394
    • Doull JL Vining LC Nutritional control of actinorhodin production by Streptomyces coelicolor A3(2): Suppressive effects of nitrogen and phosphate Appl Microbiol Biotechnol 1990, 32:449-454 10.1007/BF00903781 1366394
    • (1990) Appl Microbiol Biotechnol , vol.32 , pp. 449-454
    • Doull, J.L.1    Vining, L.C.2
  • 12
    • 0141594679 scopus 로고    scopus 로고
    • AfsR as an integrator of signals that are sensed by multiple serine/ threonine kinases in Streptomyces coelicolor A3(2)
    • 10.1007/s10295-003-0063-z 12884127
    • Horinouchi S AfsR as an integrator of signals that are sensed by multiple serine/threonine kinases in Streptomyces coelicolor A3(2) J Ind Microbiol Biotechnol 2003, 30:462-467 10.1007/s10295-003-0063-z 12884127
    • (2003) J Ind Microbiol Biotechnol , vol.30 , pp. 462-467
    • Horinouchi, S.1
  • 13
    • 0036040203 scopus 로고    scopus 로고
    • Protein serine/threonine kinases in signal transduction for secondary metabolism and morphogenesis in Streptomyces
    • 10.1007/s00253-002-1045-1 12172604
    • Umeyama T Lee PC Horinouchi S Protein serine/threonine kinases in signal transduction for secondary metabolism and morphogenesis in Streptomyces Appl Microbiol Biotechnol 2002, 59:419-425 10.1007/s00253-002-1045-1 12172604
    • (2002) Appl Microbiol Biotechnol , vol.59 , pp. 419-425
    • Umeyama, T.1    Lee, P.C.2    Horinouchi, S.3
  • 14
    • 33845600444 scopus 로고    scopus 로고
    • Binding study of AfsK, a Ser/Thr kinase from Streptomyces coelicolor A3(2) and S-adenosyl-L-methionine
    • 10.1111/j.1574-6968.2006.00531.x 17132150
    • Lee Y Kim K Suh JW Rhee S Lim Y Binding study of AfsK, a Ser/Thr kinase from Streptomyces coelicolor A3(2) and S-adenosyl-L-methionine FEMS Microbiol Lett 2007, 266:236-240 10.1111/j.1574-6968.2006.00531.x 17132150
    • (2007) FEMS Microbiol Lett , vol.266 , pp. 236-240
    • Lee, Y.1    Kim, K.2    Suh, J.W.3    Rhee, S.4    Lim, Y.5
  • 15
    • 0034837644 scopus 로고    scopus 로고
    • Autophosphorylation of a bacterial serine/threonine kinase, AfsK, is inhibited by KbpA, an AfsK-binding protein
    • 95440 11544211 10.1128/JB.183.19.5506-5512.2001
    • Umeyama T Horinouchi S Autophosphorylation of a bacterial serine/ threonine kinase, AfsK, is inhibited by KbpA, an AfsK-binding protein J Bacteriol 2001, 183:5506-5512 95440 11544211 10.1128/ JB.183.19.5506-5512.2001
    • (2001) J Bacteriol , vol.183 , pp. 5506-5512
    • Umeyama, T.1    Horinouchi, S.2
  • 16
    • 3142600895 scopus 로고    scopus 로고
    • Phosphorylation of AfsR by multiple serine/threonine kinases in Streptomyces coelicolor A3(2)
    • 10.1016/j.gene.2004.02.046 15256255
    • Sawai R Suzuki A Takano Y Lee PC Horinouchi S Phosphorylation of AfsR by multiple serine/threonine kinases in Streptomyces coelicolor A3(2) Gene 2004, 334:53-61 10.1016/j.gene.2004.02.046 15256255
    • (2004) Gene , vol.334 , pp. 53-61
    • Sawai, R.1    Suzuki, A.2    Takano, Y.3    Lee, P.C.4    Horinouchi, S.5
  • 17
    • 0028171561 scopus 로고
    • afsR2: A previously undetected gene encoding a 63-amino-acid protein that stimulates antibiotic production in Streptomyces lividans
    • 10.1111/j.1365-2958.1994.tb01303.x 7891553
    • Vogtli M Chang PC Cohen SN afsR2: A previously undetected gene encoding a 63-amino-acid protein that stimulates antibiotic production in Streptomyces lividans Mol Microbiol 1994, 14:643-653 10.1111/ j.1365-2958.1994.tb01303.x 7891553
    • (1994) Mol Microbiol , vol.14 , pp. 643-653
    • Vogtli, M.1    Chang, P.C.2    Cohen, S.N.3
  • 18
    • 0029762312 scopus 로고    scopus 로고
    • afsR is a pleiotropic but conditionally required regulatory gene for antibiotic production in Streptomyces coelicolor A3(2)
    • 10.1046/j.1365-2958.1996.6491364.x 8858592
    • Floriano B Bibb M afsR is a pleiotropic but conditionally required regulatory gene for antibiotic production in Streptomyces coelicolor A3(2) Mol Microbiol 1996, 21:385-396 10.1046/j.1365-2958.1996.6491364.x 8858592
    • (1996) Mol Microbiol , vol.21 , pp. 385-396
    • Floriano, B.1    Bibb, M.2
  • 19
    • 0036268103 scopus 로고    scopus 로고
    • afsS is a target of AfsR, a transcriptional factor with ATPase activity that globally controls secondary metabolism in Streptomyces coelicolor A3(2)
    • 10.1046/j.1365-2958.2002.02840.x 11952895
    • Lee PC Umeyama T Horinouchi S afsS is a target of AfsR, a transcriptional factor with ATPase activity that globally controls secondary metabolism in Streptomyces coelicolor A3(2) Mol Microbiol 2002, 43:1413-1430 10.1046/j.1365-2958.2002.02840.x 11952895
    • (2002) Mol Microbiol , vol.43 , pp. 1413-1430
    • Lee, P.C.1    Umeyama, T.2    Horinouchi, S.3
  • 20
    • 0035576880 scopus 로고    scopus 로고
    • Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays
    • 312833 11731481 10.1101/gad.943401
    • Huang J Lih CJ Pan KH Cohen SN Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays Genes Dev 2001, 15:3183-3192 312833 11731481 10.1101/gad.943401
    • (2001) Genes Dev , vol.15 , pp. 3183-3192
    • Huang, J.1    Lih, C.J.2    Pan, K.H.3    Cohen, S.N.4
  • 21
    • 3843050181 scopus 로고    scopus 로고
    • Phosphate control of the biosynthesis of antibiotics and other secondary metabolites is mediated by the PhoR-PhoP system: An unfinished story
    • 490900 15292120 10.1128/JB.186.16.5197-5201.2004
    • Martin JF Phosphate control of the biosynthesis of antibiotics and other secondary metabolites is mediated by the PhoR-PhoP system: An unfinished story J Bacteriol 2004, 186:5197-5201 490900 15292120 10.1128/ JB.186.16.5197-5201.2004
    • (2004) J Bacteriol , vol.186 , pp. 5197-5201
    • Martin, J.F.1
  • 22
    • 30844434821 scopus 로고    scopus 로고
    • A framework to analyze multiple time series data: A case study with Streptomyces coelicolor
    • 10.1007/s10295-005-0034-7 16217633
    • Mehra S Lian W Jayapal KP Charaniya SP Sherman DH Hu WS A framework to analyze multiple time series data: A case study with Streptomyces coelicolor J Ind Microbiol Biotechnol 2006, 33:159-172 10.1007/ s10295-005-0034-7 16217633
    • (2006) J Ind Microbiol Biotechnol , vol.33 , pp. 159-172
    • Mehra, S.1    Lian, W.2    Jayapal, K.P.3    Charaniya, S.P.4    Sherman, D.H.5    Hu, W.S.6
  • 23
    • 34547144162 scopus 로고    scopus 로고
    • Genome-wide transcriptomic and proteomic analysis of the primary response to phosphate limitation in Streptomyces coelicolor M145 and in a ΔphoP mutant
    • 10.1002/pmic.200600883 17623301
    • Rodriguez-Garcia A Barreiro C Santos-Beneit F Sola-Landa A Martin JF Genome-wide transcriptomic and proteomic analysis of the primary response to phosphate limitation in Streptomyces coelicolor M145 and in a ΔphoP mutant Proteomics 2007, 7:2410-2429 10.1002/pmic.200600883 17623301
    • (2007) Proteomics , vol.7 , pp. 2410-2429
    • Rodriguez-Garcia, A.1    Barreiro, C.2    Santos-Beneit, F.3    Sola-Landa, A.4    Martin, J.F.5
  • 24
    • 33845199230 scopus 로고    scopus 로고
    • The twin-arginine translocation pathway is a major route of protein export in Streptomyces coelicolor
    • 1693849 17093047 10.1073/pnas.0607025103
    • Widdick DA Dilks K Chandra G Bottrill A Naldrett M Pohlschroder M Palmer T The twin-arginine translocation pathway is a major route of protein export in Streptomyces coelicolor Proc Natl Acad Sci USA 2006, 103:17927-17932 1693849 17093047 10.1073/pnas.0607025103
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 17927-17932
    • Widdick, D.A.1    Dilks, K.2    Chandra, G.3    Bottrill, A.4    Naldrett, M.5    Pohlschroder, M.6    Palmer, T.7
  • 25
    • 30744468390 scopus 로고    scopus 로고
    • Transcriptional studies and regulatory interactions between the phoR-phoP operon and the phoU, mtpA, and ppk genes of Streptomyces lividans TK24
    • 1347273 16385057 10.1128/JB.188.2.677-686.2006
    • Ghorbel S Kormanec J Artus A Virolle MJ Transcriptional studies and regulatory interactions between the phoR-phoP operon and the phoU, mtpA, and ppk genes of Streptomyces lividans TK24 J Bacteriol 2006, 188:677-686 1347273 16385057 10.1128/JB.188.2.677-686.2006
    • (2006) J Bacteriol , vol.188 , pp. 677-686
    • Ghorbel, S.1    Kormanec, J.2    Artus, A.3    Virolle, M.J.4
  • 26
    • 0038284769 scopus 로고    scopus 로고
    • The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in Streptomyces lividans
    • 156338 12730372 10.1073/pnas.0931429100
    • Sola-Landa A Moura RS Martin JF The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in Streptomyces lividans Proc Natl Acad Sci USA 2003, 100:6133-6138 156338 12730372 10.1073/pnas.0931429100
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 6133-6138
    • Sola-Landa, A.1    Moura, R.S.2    Martin, J.F.3
  • 27
    • 23844490045 scopus 로고    scopus 로고
    • The high-affinity phosphate-binding protein PstS is accumulated under high fructose concentrations and mutation of the corresponding gene affects differentiation in Streptomyces lividans
    • 10.1099/mic.0.27983-0 16079337
    • Diaz M Esteban A Fernandez-Abalos JM Santamaria RI The high-affinity phosphate-binding protein PstS is accumulated under high fructose concentrations and mutation of the corresponding gene affects differentiation in Streptomyces lividans Microbiology 2005, 151:2583-2592 10.1099/mic.0.27983-0 16079337
    • (2005) Microbiology , vol.151 , pp. 2583-2592
    • Diaz, M.1    Esteban, A.2    Fernandez-Abalos, J.M.3    Santamaria, R.I.4
  • 28
    • 33748999287 scopus 로고    scopus 로고
    • Regulation of ppk expression and in vivo function of Ppk in Streptomyces lividans TK24
    • 1595360 16923894 10.1128/JB.00202-06
    • Ghorbel S Smirnov A Chouayekh H Sperandio B Esnault C Kormanec J Virolle MJ Regulation of ppk expression and in vivo function of Ppk in Streptomyces lividans TK24 J Bacteriol 2006, 188:6269-6276 1595360 16923894 10.1128/JB.00202-06
    • (2006) J Bacteriol , vol.188 , pp. 6269-6276
    • Ghorbel, S.1    Smirnov, A.2    Chouayekh, H.3    Sperandio, B.4    Esnault, C.5    Kormanec, J.6    Virolle, M.J.7
  • 29
    • 0032855884 scopus 로고    scopus 로고
    • Nitrogen metabolism in Streptomyces coelicolor A3(2): Modification of glutamine synthetase I by an adenylyltransferase
    • 10517584
    • Fink D Falke D Wohlleben W Engels A Nitrogen metabolism in Streptomyces coelicolor A3(2): Modification of glutamine synthetase I by an adenylyltransferase Microbiology 1999, 145(Pt 9):2313-2322 10517584
    • (1999) Microbiology , vol.145 , Issue.PART 9 , pp. 2313-2322
    • Fink, D.1    Falke, D.2    Wohlleben, W.3    Engels, A.4
  • 30
    • 33845740146 scopus 로고    scopus 로고
    • Nitrogen metabolism in Streptomyces coelicolor: Transcriptional and post-translational regulation
    • 10.1159/000096469 17183221
    • Reuther J Wohlleben W Nitrogen metabolism in Streptomyces coelicolor: transcriptional and post-translational regulation J Mol Microbiol Biotechnol 2007, 12:139-146 10.1159/000096469 17183221
    • (2007) J Mol Microbiol Biotechnol , vol.12 , pp. 139-146
    • Reuther, J.1    Wohlleben, W.2
  • 31
    • 0036430005 scopus 로고    scopus 로고
    • The GlnD and GlnK homologues of Streptomyces coelicolor A3(2) are functionally dissimilar to their nitrogen regulatory system counterparts from enteric bacteria
    • 10.1046/j.1365-2958.2002.03149.x 12406211
    • Hesketh A Fink D Gust B Rexer HU Scheel B Chater K Wohlleben W Engels A The GlnD and GlnK homologues of Streptomyces coelicolor A3(2) are functionally dissimilar to their nitrogen regulatory system counterparts from enteric bacteria Mol Microbiol 2002, 46:319-330 10.1046/ j.1365-2958.2002.03149.x 12406211
    • (2002) Mol Microbiol , vol.46 , pp. 319-330
    • Hesketh, A.1    Fink, D.2    Gust, B.3    Rexer, H.U.4    Scheel, B.5    Chater, K.6    Wohlleben, W.7    Engels, A.8
  • 32
    • 18744383916 scopus 로고    scopus 로고
    • Two transcriptional regulators GlnR and GlnRII are involved in regulation of nitrogen metabolism in Streptomyces coelicolor A3(2)
    • 10.1046/j.1365-2958.2002.03150.x 12406212
    • Fink D Weissschuh N Reuther J Wohlleben W Engels A Two transcriptional regulators GlnR and GlnRII are involved in regulation of nitrogen metabolism in Streptomyces coelicolor A3(2) Mol Microbiol 2002, 46:331-347 10.1046/j.1365-2958.2002.03150.x 12406212
    • (2002) Mol Microbiol , vol.46 , pp. 331-347
    • Fink, D.1    Weissschuh, N.2    Reuther, J.3    Wohlleben, W.4    Engels, A.5
  • 33
    • 0036856382 scopus 로고    scopus 로고
    • Genetic and physiological characterization of rpoB mutations that activate antibiotic production in Streptomyces lividans
    • 12427928
    • Lai C Xu J Tozawa Y Okamoto-Hosoya Y Yao X Ochi K Genetic and physiological characterization of rpoB mutations that activate antibiotic production in Streptomyces lividans Microbiology 2002, 148:3365-3373 12427928
    • (2002) Microbiology , vol.148 , pp. 3365-3373
    • Lai, C.1    Xu, J.2    Tozawa, Y.3    Okamoto-Hosoya, Y.4    Yao, X.5    Ochi, K.6
  • 34
    • 34250345529 scopus 로고    scopus 로고
    • A complex role of Amycolatopsis mediterranei GlnR in nitrogen metabolism and related antibiotics production
    • 10.1007/s00203-007-0228-7 17364194
    • Yu H Yao Y Liu Y Jiao R Jiang W Zhao GP A complex role of Amycolatopsis mediterranei GlnR in nitrogen metabolism and related antibiotics production Arch Microbiol 2007, 188:89-96 10.1007/s00203-007-0228-7 17364194
    • (2007) Arch Microbiol , vol.188 , pp. 89-96
    • Yu, H.1    Yao, Y.2    Liu, Y.3    Jiao, R.4    Jiang, W.5    Zhao, G.P.6
  • 35
    • 37548999354 scopus 로고    scopus 로고
    • Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor
    • 2175336 17959654
    • Charaniya S Mehra S Lian W Jayapal KP Karypis G Hu WS Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor Nucleic Acids Res 2007 2175336 17959654
    • (2007) Nucleic Acids Res
    • Charaniya, S.1    Mehra, S.2    Lian, W.3    Jayapal, K.P.4    Karypis, G.5    Hu, W.S.6
  • 36
    • 0033748007 scopus 로고    scopus 로고
    • Transcriptional analysis of the gene for glutamine synthetase II and two upstream genes in Streptomyces coelicolor A3(2)
    • 10.1007/s004380000315 11129050
    • Weisschuh N Fink D Vierling S Bibb MJ Wohlleben W Engels A Transcriptional analysis of the gene for glutamine synthetase II and two upstream genes in Streptomyces coelicolor A3(2) Mol Gen Genet 2000, 264:461-469 10.1007/s004380000315 11129050
    • (2000) Mol Gen Genet , vol.264 , pp. 461-469
    • Weisschuh, N.1    Fink, D.2    Vierling, S.3    Bibb, M.J.4    Wohlleben, W.5    Engels, A.6
  • 37
    • 32544433476 scopus 로고    scopus 로고
    • EDGE: Extraction and analysis of differential gene expression
    • 10.1093/bioinformatics/btk005 16357033
    • Leek JT Monsen E Dabney AR Storey JD EDGE: Extraction and analysis of differential gene expression Bioinformatics 2006, 22:507-508 10.1093/ bioinformatics/btk005 16357033
    • (2006) Bioinformatics , vol.22 , pp. 507-508
    • Leek, J.T.1    Monsen, E.2    Dabney, A.R.3    Storey, J.D.4
  • 38
    • 24644519314 scopus 로고    scopus 로고
    • Significance analysis of time course microarray experiments
    • 1201697 16141318 10.1073/pnas.0504609102
    • Storey JD Xiao W Leek JT Tompkins RG Davis RW Significance analysis of time course microarray experiments Proc Natl Acad Sci USA 2005, 102:12837-12842 1201697 16141318 10.1073/pnas.0504609102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12837-12842
    • Storey, J.D.1    Xiao, W.2    Leek, J.T.3    Tompkins, R.G.4    Davis, R.W.5
  • 39
    • 0037434959 scopus 로고    scopus 로고
    • Cloning of the conserved regulatory operon by its aerial mycelium-inducing activity in an amfR mutant of Streptomyces griseus
    • 10.1016/S0378-1119(03)00405-0 12657469
    • Komatsu M Kuwahara Y Hiroishi A Hosono K Beppu T Ueda K Cloning of the conserved regulatory operon by its aerial mycelium-inducing activity in an amfR mutant of Streptomyces griseus Gene 2003, 306:79-89 10.1016/ S0378-1119(03)00405-0 12657469
    • (2003) Gene , vol.306 , pp. 79-89
    • Komatsu, M.1    Kuwahara, Y.2    Hiroishi, A.3    Hosono, K.4    Beppu, T.5    Ueda, K.6
  • 40
    • 0035087341 scopus 로고    scopus 로고
    • Modulation of actinorhodin biosynthesis in Streptomyces lividans by glucose repression of afsR2 gene transcription
    • 95124 11244057 10.1128/JB.183.7.2198-2203.2001
    • Kim ES Hong HJ Choi CY Cohen SN Modulation of actinorhodin biosynthesis in Streptomyces lividans by glucose repression of afsR2 gene transcription J Bacteriol 2001, 183:2198-2203 95124 11244057 10.1128/ JB.183.7.2198-2203.2001
    • (2001) J Bacteriol , vol.183 , pp. 2198-2203
    • Kim, E.S.1    Hong, H.J.2    Choi, C.Y.3    Cohen, S.N.4
  • 41
    • 34249805418 scopus 로고    scopus 로고
    • Interspecies DNA microarray analysis identifies WblA as a pleiotropic down-regulator of antibiotic biosynthesis in Streptomyces
    • 1913423 17416669 10.1128/JB.01789-06
    • Kang SH Huang J Lee HN Hur YA Cohen SN Kim ES Interspecies DNA microarray analysis identifies WblA as a pleiotropic down-regulator of antibiotic biosynthesis in Streptomyces J Bacteriol 2007, 189:4315-4319 1913423 17416669 10.1128/JB.01789-06
    • (2007) J Bacteriol , vol.189 , pp. 4315-4319
    • Kang, S.H.1    Huang, J.2    Lee, H.N.3    Hur, Y.A.4    Cohen, S.N.5    Kim, E.S.6
  • 43
    • 33845425005 scopus 로고    scopus 로고
    • Identification of a gene negatively affecting antibiotic production and morphological differentiation in Streptomyces coelicolor A3(2)
    • 1698255 17041057 10.1128/JB.00933-06
    • Li W Ying X Guo Y Yu Z Zhou X Deng Z Kieser H Chater KF Tao M Identification of a gene negatively affecting antibiotic production and morphological differentiation in Streptomyces coelicolor A3(2) J Bacteriol 2006, 188:8368-8375 1698255 17041057 10.1128/JB.00933-06
    • (2006) J Bacteriol , vol.188 , pp. 8368-8375
    • Li, W.1    Ying, X.2    Guo, Y.3    Yu, Z.4    Zhou, X.5    Deng, Z.6    Kieser, H.7    Chater, K.F.8    Tao, M.9
  • 44
    • 33750183674 scopus 로고    scopus 로고
    • Functional dissection of sigma-like domain in antibiotic regulatory gene, afsR2 in Streptomyces lividans
    • Kim CY Park HJ Kim ES Functional dissection of sigma-like domain in antibiotic regulatory gene, afsR2 in Streptomyces lividans J Microbiol Biotechnol 2006, 16:1477-1480
    • (2006) J Microbiol Biotechnol , vol.16 , pp. 1477-1480
    • Kim, C.Y.1    Park, H.J.2    Kim, E.S.3
  • 46
    • 0026645203 scopus 로고
    • Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp
    • 10.1016/0378-1119(92)90627-2 1628843
    • Bierman M Logan R O'Brien K Seno ET Rao RN Schoner BE Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp Gene 1992, 116:43-49 10.1016/0378-1119(92)90627-2 1628843
    • (1992) Gene , vol.116 , pp. 43-49
    • Bierman, M.1    Logan, R.2    O'Brien, K.3    Seno, E.T.4    Rao, R.N.5    Schoner, B.E.6
  • 48
    • 0037162469 scopus 로고    scopus 로고
    • Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
    • 124983 12119387 10.1073/pnas.112318199
    • Bernstein JA Khodursky AB Lin PH Lin-Chao S Cohen SN Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays Proc Natl Acad Sci USA 2002, 99:9697-9702 124983 12119387 10.1073/pnas.112318199
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 9697-9702
    • Bernstein, J.A.1    Khodursky, A.B.2    Lin, P.H.3    Lin-Chao, S.4    Cohen, S.N.5
  • 50
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method
    • 10.1006/meth.2001.1262 11846609
    • Livak KJ Schmittgen TD Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method Methods 2001, 25:402-408 10.1006/meth.2001.1262 11846609
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 51
    • 0034954376 scopus 로고    scopus 로고
    • Aligning gene expression time series with time warping algorithms
    • 10.1093/bioinformatics/17.6.495 11395426
    • Aach J Church GM Aligning gene expression time series with time warping algorithms Bioinformatics 2001, 17:495-508 10.1093/bioinformatics/ 17.6.495 11395426
    • (2001) Bioinformatics , vol.17 , pp. 495-508
    • Aach, J.1    Church, G.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.