-
1
-
-
66849106554
-
An expanding arsenal of experimental methods yields an explosion of insights into protein folding mechanisms
-
Bartlett A.I., and Radford S.E. An expanding arsenal of experimental methods yields an explosion of insights into protein folding mechanisms Nat. Struct. Mol. Biol. 16 2009 582 588
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 582-588
-
-
Bartlett, A.I.1
Radford, S.E.2
-
2
-
-
0002006297
-
Are there pathways for protein folding
-
Levinthal C. Are there pathways for protein folding J. Med. Phys. 65 1968 44 45
-
(1968)
J. Med. Phys.
, vol.65
, pp. 44-45
-
-
Levinthal, C.1
-
3
-
-
1842298212
-
From levinthal to pathways to funnels
-
DOI 10.1038/nsb0197-10
-
Dill K.A., and Chan H.S. From Levinthal to pathways to funnels Nat. Struct. Biol. 4 1997 10 19 (Pubitemid 27020916)
-
(1997)
Nature Structural Biology
, vol.4
, Issue.1
, pp. 10-19
-
-
Dill, K.A.1
Chan, H.S.2
-
4
-
-
79952805688
-
The denatured state dictates the topology of two proteins with almost identical sequence but different native structure and function
-
Morrone A., McCully M.E., Bryan P.N., Brunori M., Daggett V., Gianni S., and Travaglini-Allocatelli C. The denatured state dictates the topology of two proteins with almost identical sequence but different native structure and function J. Biol. Chem. 286 2011 3863 3872
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 3863-3872
-
-
Morrone, A.1
McCully, M.E.2
Bryan, P.N.3
Brunori, M.4
Daggett, V.5
Gianni, S.6
Travaglini-Allocatelli, C.7
-
5
-
-
44049097465
-
Modeling transient collapsed states of an unfolded protein to provide insights into early folding events
-
DOI 10.1073/pnas.0710641105
-
Felitsky D.J., Lietzow M.A., Dyson H.J., and Wright P.E. Modeling transient collapsed states of an unfolded protein to provide insights into early folding events Proc. Natl Acad. Sci. USA 105 2008 6278 6283 (Pubitemid 351758337)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.17
, pp. 6278-6283
-
-
Felitsky, D.J.1
Lietzow, M.A.2
Dyson, H.J.3
Wright, P.E.4
-
6
-
-
35148842435
-
Detection of initiation sites in protein folding of the four helix bundle ACBP by chemical shift analysis
-
DOI 10.1016/j.febslet.2007.09.027, PII S0014579307010095
-
Modig K., Jurgensen V.W., Lindorff-Larsen K., Fieber W., Bohr H.G., and Poulsen F.M. Detection of initiation sites in protein folding of the four helix bundle ACBP by chemical shift analysis FEBS Lett. 581 2007 4965 4971 (Pubitemid 47534206)
-
(2007)
FEBS Letters
, vol.581
, Issue.25
, pp. 4965-4971
-
-
Modig, K.1
Jurgensen, V.W.2
Lindorff-Larsen, K.3
Fieber, W.4
Bohr, H.G.5
Poulsen, F.M.6
-
7
-
-
84856414506
-
Residual structure in unfolded proteins
-
10.1016/j.sbi.2011.09.002
-
Bowler B.E. Residual structure in unfolded proteins Curr. Opin. Struct. Biol. 2011 10.1016/j.sbi.2011.09.002
-
(2011)
Curr. Opin. Struct. Biol.
-
-
Bowler, B.E.1
-
8
-
-
77955839695
-
Cooperative formation of native-like tertiary contacts in the ensemble of unfolded states of a four-helix protein
-
Bruun S.W., Iešmantavičius V., Danielsson J., and Poulsen F.M. Cooperative formation of native-like tertiary contacts in the ensemble of unfolded states of a four-helix protein Proc. Natl Acad. Sci. USA 107 2010 13306 13311
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 13306-13311
-
-
Bruun, S.W.1
Iešmantavičius, V.2
Danielsson, J.3
Poulsen, F.M.4
-
9
-
-
44149110312
-
Extreme temperature tolerance of a hyperthermophilic protein coupled to residual structure in the unfolded state
-
Wallgren M., Aden J., Pylypenko O., Mikaelsson T., Johansson L.B., Rak A., and Wolf-Watz M. Extreme temperature tolerance of a hyperthermophilic protein coupled to residual structure in the unfolded state J. Mol. Biol. 379 2008 845 858
-
(2008)
J. Mol. Biol.
, vol.379
, pp. 845-858
-
-
Wallgren, M.1
Aden, J.2
Pylypenko, O.3
Mikaelsson, T.4
Johansson, L.B.5
Rak, A.6
Wolf-Watz, M.7
-
10
-
-
67650684936
-
Structure and disorder in an unfolded state under nondenaturing conditions from ensemble models consistent with a large number of experimental restraints
-
Marsh J.A., and Forman-Kay J.D. Structure and disorder in an unfolded state under nondenaturing conditions from ensemble models consistent with a large number of experimental restraints J. Mol. Biol. 391 2009 359 374
-
(2009)
J. Mol. Biol.
, vol.391
, pp. 359-374
-
-
Marsh, J.A.1
Forman-Kay, J.D.2
-
11
-
-
0035058986
-
Structural and dynamic characterization of an unfolded state of poplar apo-plastocyanin formed under nondenaturing conditions
-
DOI 10.1110/ps.00601
-
Bai Y.W., Chung J., Dyson H.J., and Wright P.E. Structural and dynamic characterization of an unfolded state of poplar apo-plastocyanin formed under nondenaturing conditions Protein Sci. 10 2001 1056 1066 (Pubitemid 32367497)
-
(2001)
Protein Science
, vol.10
, Issue.5
, pp. 1056-1066
-
-
Bai, Y.1
Chung, J.2
Jane Dyson, H.3
Wright, P.E.4
-
12
-
-
77950801490
-
The cold denatured state of the C-terminal domain of protein L9 is compact and contains both native and non-native structure
-
Shan B., McClendon S., Rospigliosi C., Eliezer D., and Raleigh D.P. The cold denatured state of the C-terminal domain of protein L9 is compact and contains both native and non-native structure J. Am. Chem. Soc. 132 2010 4669 4677
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 4669-4677
-
-
Shan, B.1
McClendon, S.2
Rospigliosi, C.3
Eliezer, D.4
Raleigh, D.P.5
-
13
-
-
77950957827
-
Residue-specific description of non-native transient structures in the ensemble of acid-denatured structures of the all-beta protein c-src SH3
-
Rosner H.I., and Poulsen F.M. Residue-specific description of non-native transient structures in the ensemble of acid-denatured structures of the all-beta protein c-src SH3 Biochemistry 49 2010 3246 3253
-
(2010)
Biochemistry
, vol.49
, pp. 3246-3253
-
-
Rosner, H.I.1
Poulsen, F.M.2
-
14
-
-
74949131609
-
Ensemble calculations of unstructured proteins constrained by RDC and PRE data: A case study of urea-denatured ubiquitin
-
Huang J.R., and Grzesiek S. Ensemble calculations of unstructured proteins constrained by RDC and PRE data: a case study of urea-denatured ubiquitin J. Am. Chem. Soc. 132 2010 694 705
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 694-705
-
-
Huang, J.R.1
Grzesiek, S.2
-
15
-
-
57749209980
-
The denatured state of N-PGK is compact and predominantly disordered
-
Cliff M.J., Craven C.J., Marston J.P., Hounslow A.M., Clarke A.R., and Waltho J.P. The denatured state of N-PGK is compact and predominantly disordered J. Mol. Biol. 385 2009 266 277
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 266-277
-
-
Cliff, M.J.1
Craven, C.J.2
Marston, J.P.3
Hounslow, A.M.4
Clarke, A.R.5
Waltho, J.P.6
-
16
-
-
33344473937
-
The denatured state under native conditions: A non-native-like collapsed state of N-PGK
-
DOI 10.1016/j.jmb.2005.12.080, PII S0022283605016700
-
Reed M.A.C., Jelinska C., Syson K., Cliff M.J., Splevins A., and Alizadeh T. The denatured state under native conditions: a non-native-like collapsed state of N-PGK J. Mol. Biol. 357 2006 365 372 (Pubitemid 43290740)
-
(2006)
Journal of Molecular Biology
, vol.357
, Issue.2
, pp. 365-372
-
-
Reed, M.A.C.1
Jelinska, C.2
Syson, K.3
Cliff, M.J.4
Splevins, A.5
Alizadeh, T.6
Hounslow, A.M.7
Staniforth, R.A.8
Clarke, A.R.9
Jeremy Craven, C.10
Waltho, J.P.11
-
17
-
-
0037159208
-
Molecular hinges in protein folding: The urea-denatured state of apomyoglobin
-
DOI 10.1021/bi020381o
-
Schwarzinger S., Wright P.E., and Dyson H.J. Molecular hinges in protein folding: the urea-denatured state of apomyoglobin Biochemistry 41 2002 12681 12686 (Pubitemid 35192497)
-
(2002)
Biochemistry
, vol.41
, Issue.42
, pp. 12681-12686
-
-
Schwarzinger, S.1
Wright, P.E.2
Dyson, H.J.3
-
18
-
-
27144532135
-
Solution structure of a protein denatured state and folding intermediate
-
DOI 10.1038/nature04054, PII N04054
-
Religa T.L., Markson J.S., Mayor U., Freund S.M., and Fersht A.R. Solution structure of a protein denatured state and folding intermediate Nature 437 2005 1053 1056 (Pubitemid 41486989)
-
(2005)
Nature
, vol.437
, Issue.7061
, pp. 1053-1056
-
-
Religa, T.L.1
Markson, J.S.2
Mayor, U.3
Freund, S.M.V.4
Fersht, A.R.5
-
19
-
-
33747463656
-
The unfolded state of NTL9 is compact in the absence of denaturant
-
DOI 10.1021/bi060636o
-
Anil B., Li Y., Cho J.H., and Raleigh D.P. The unfolded state of NTL9 is compact in the absence of denaturant Biochemistry 45 2006 10110 10116 (Pubitemid 44257405)
-
(2006)
Biochemistry
, vol.45
, Issue.33
, pp. 10110-10116
-
-
Anil, B.1
Li, Y.2
Cho, J.-H.3
Raleigh, D.P.4
-
20
-
-
33846817348
-
Backbone dynamics of the monomeric λ repressor denatured state ensemble under nondenaturing conditions
-
DOI 10.1021/bi061371g
-
Chugha P., and Oas T.G. Backbone dynamics of the monomeric lambda repressor denatured state ensemble under nondenaturing conditions Biochemistry 46 2007 1141 1151 (Pubitemid 46208463)
-
(2007)
Biochemistry
, vol.46
, Issue.5
, pp. 1141-1151
-
-
Chugha, P.1
Oas, T.G.2
-
21
-
-
33748268107
-
Characterization of the residual structure in the unfolded state of the Δ131Δ fragment of staphylococcal nuclease
-
DOI 10.1002/prot.21077
-
Francis C.J., Lindorff-Larsen K., Best R.B., and Vendruscolo M. Characterization of the residual structure in the unfolded state of the Δ131Δ fragment of staphylococcal nuclease Proteins 65 2006 145 152 (Pubitemid 44320624)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.1
, pp. 145-152
-
-
Francis, C.J.1
Lindorff-Larsen, K.2
Best, R.B.3
Vendruscolo, M.4
-
22
-
-
33846839535
-
Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy any molecular simulations
-
DOI 10.1073/pnas.0607097104
-
Merchant K.A., Best R.B., Louis J.M., Gopich I.V., and Eaton W.A. Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations Proc. Natl Acad. Sci. USA 104 2007 1528 1533 (Pubitemid 46214624)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.5
, pp. 1528-1533
-
-
Merchant, K.A.1
Best, R.B.2
Louis, J.M.3
Gopich, I.V.4
Eaton, W.A.5
-
23
-
-
79951970603
-
Native and unfolded states of phosphoglycerate kinase studied by single-molecule FRET
-
Rosenkranz T., Schlesinger R., Gabba M., and Fitter J. Native and unfolded states of phosphoglycerate kinase studied by single-molecule FRET ChemPhysChem 12 2011 704 710
-
(2011)
ChemPhysChem
, vol.12
, pp. 704-710
-
-
Rosenkranz, T.1
Schlesinger, R.2
Gabba, M.3
Fitter, J.4
-
24
-
-
77950861847
-
Single-molecule studies of the Im7 folding landscape
-
Pugh S.D., Gell C., Smith D.A., Radford S.E., and Brockwell D.J. Single-molecule studies of the Im7 folding landscape J. Mol. Biol. 398 2010 132 145
-
(2010)
J. Mol. Biol.
, vol.398
, pp. 132-145
-
-
Pugh, S.D.1
Gell, C.2
Smith, D.A.3
Radford, S.E.4
Brockwell, D.J.5
-
25
-
-
82555168273
-
NMR characterisation of the relationship between frustration and the excited state of Im7
-
Whittaker S.B., Clayden N.J., and Moore G.R. NMR characterisation of the relationship between frustration and the excited state of Im7 J. Mol. Biol. 414 2011 511 529
-
(2011)
J. Mol. Biol.
, vol.414
, pp. 511-529
-
-
Whittaker, S.B.1
Clayden, N.J.2
Moore, G.R.3
-
26
-
-
77649275410
-
Desolvation and development of specific hydrophobic core packing during Im7 folding
-
Bartlett A.I., and Radford S.E. Desolvation and development of specific hydrophobic core packing during Im7 folding J. Mol. Biol. 396 2010 1329 1345
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 1329-1345
-
-
Bartlett, A.I.1
Radford, S.E.2
-
27
-
-
62049084565
-
The mechanism of folding of Im7 reveals competition between functional and kinetic evolutionary constraints
-
Friel C.T., Smith D.A., Vendruscolo M., Gsponer J., and Radford S.E. The mechanism of folding of Im7 reveals competition between functional and kinetic evolutionary constraints Nat. Struct. Mol. Biol. 16 2009 318 324
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 318-324
-
-
Friel, C.T.1
Smith, D.A.2
Vendruscolo, M.3
Gsponer, J.4
Radford, S.E.5
-
28
-
-
69749123006
-
Amino acid insertion reveals a necessary three-helical intermediate in the folding pathway of the colicin E7 immunity protein Im7
-
Knowling S.E., Figueiredo A.M., Whittaker S.B., Moore G.R., and Radford S.E. Amino acid insertion reveals a necessary three-helical intermediate in the folding pathway of the colicin E7 immunity protein Im7 J. Mol. Biol. 392 2009 1074 1086
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 1074-1086
-
-
Knowling, S.E.1
Figueiredo, A.M.2
Whittaker, S.B.3
Moore, G.R.4
Radford, S.E.5
-
29
-
-
33750962168
-
Characterisation of the Conformational Properties of Urea-unfolded Im7: Implications for the Early Stages of Protein Folding
-
DOI 10.1016/j.jmb.2006.09.037, PII S0022283606012447
-
Le Duff C.S., Whittaker S.B., Radford S.E., and Moore G.R. Characterisation of the conformational properties of urea-unfolded Im7: implications for the early stages of protein folding J. Mol. Biol. 364 2006 824 835 (Pubitemid 44737830)
-
(2006)
Journal of Molecular Biology
, vol.364
, Issue.4
, pp. 824-835
-
-
Le Duff, C.S.1
Whittaker, S.B.-M.2
Radford, S.E.3
Moore, G.R.4
-
30
-
-
0036183221
-
Im7 folding mechanism: Misfolding on a path to the native state
-
DOI 10.1038/nsb757
-
Capaldi A.P., Kleanthous C., and Radford S.E. Im7 folding mechanism: misfolding on a path to the native state Nat. Struct. Biol. 9 2002 209 216 (Pubitemid 34171314)
-
(2002)
Nature Structural Biology
, vol.9
, Issue.3
, pp. 209-216
-
-
Capaldi, A.P.1
Kleanthous, C.2
Radford, S.E.3
-
31
-
-
33846577660
-
NMR Analysis of the Conformational Properties of the Trapped on-pathway Folding Intermediate of the Bacterial Immunity Protein Im7
-
DOI 10.1016/j.jmb.2006.11.012, PII S0022283606015415
-
Whittaker S.B.M., Spence G.R., Grossmann J.G., Radford S.E., and Moore G.R. NMR analysis of the conformational properties of the trapped on-pathway folding intermediate of the bacterial immunity protein Im7 J. Mol. Biol. 366 2007 1001 1015 (Pubitemid 46175862)
-
(2007)
Journal of Molecular Biology
, vol.366
, Issue.3
, pp. 1001-1015
-
-
Whittaker, S.B.-M.1
Spence, G.R.2
Gunter Grossmann, J.3
Radford, S.E.4
Moore, G.R.5
-
32
-
-
4143080376
-
Trapping the on-pathway folding intermediate of Im7 at equilibrium
-
DOI 10.1016/j.jmb.2004.05.049, PII S0022283604006291
-
Spence G.R., Capaldi A.P., and Radford S.E. Trapping the on-pathway folding intermediate of Im7 at equilibrium J. Mol. Biol. 341 2004 215 226 (Pubitemid 39090646)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.1
, pp. 215-226
-
-
Spence, G.R.1
Capaldi, A.P.2
Radford, S.E.3
-
33
-
-
0032127769
-
A structural comparison of the colicin immunity proteins Im7 and Im9 gives new insights into the molecular determinants of immunity-protein specificity
-
Dennis C.A., Videler H., Pauptit R.A., Wallis R., James R., Moore G.R., and Kleanthous C. A structural comparison of the colicin immunity proteins Im7 and Im9 gives new insights into the molecular determinants of immunity-protein specificity Biochem. J. 333 1998 183 191 (Pubitemid 28342508)
-
(1998)
Biochemical Journal
, vol.333
, Issue.1
, pp. 183-191
-
-
Dennis, C.A.1
Videler, H.2
Pauptit, R.A.3
Wallis, R.4
James, R.5
Moore, G.R.6
Kleanthous, C.7
-
34
-
-
30444450687
-
Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7
-
DOI 10.1073/pnas.0508667102
-
Gsponer J., Hopearuoho H., Whittaker S.B.M., Spence G.R., Moore G.R., and Paci E. Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7 Proc. Natl Acad. Sci. USA 103 2006 99 104 (Pubitemid 43076111)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.1
, pp. 99-104
-
-
Gsponer, J.1
Hopearuoho, H.2
Whittaker, S.B.-M.3
Spence, G.R.4
Moore, G.R.5
Paci, E.6
Radford, S.E.7
Vendruscolo, M.8
-
35
-
-
0028820703
-
Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding
-
Myers J.K., Pace C.N., and Scholtz J.M. Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding Protein Sci. 4 1995 2138 2148
-
(1995)
Protein Sci.
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
36
-
-
33644857694
-
Calorimetric dissection of colicin DNase-immunity protein complex specificity
-
DOI 10.1021/bi052373o
-
Keeble A.H., Kirkpatrick N., Shimizu S., and Kleanthous C. Calorimetric dissection of colicin DNase-immunity protein complex specificity Biochemistry 45 2006 3243 3254 (Pubitemid 43376343)
-
(2006)
Biochemistry
, vol.45
, Issue.10
, pp. 3243-3254
-
-
Keeble, A.H.1
Kirkpatrick, N.2
Shimizu, S.3
Kleanthous, C.4
-
37
-
-
71149120194
-
Optimizing protein stability in vivo
-
Foit L., Morgan G.J., Kern M.J., Steimer L.R., von Hacht A.A., and Titchmarsh J. Optimizing protein stability in vivo Mol. Cell 36 2009 861 871
-
(2009)
Mol. Cell
, vol.36
, pp. 861-871
-
-
Foit, L.1
Morgan, G.J.2
Kern, M.J.3
Steimer, L.R.4
Von Hacht, A.A.5
Titchmarsh, J.6
-
38
-
-
0035965128
-
Acidic conditions stabilise intermediates populated during the folding of Im7 and Im9
-
DOI 10.1006/jmbi.2001.5001
-
Gorski S.A., Capaldi A.P., Kleanthous C., and Radford S.E. Acidic conditions stabilise intermediates populated during the folding of Im7 and Im9 J. Mol. Biol. 312 2001 849 863 (Pubitemid 33116745)
-
(2001)
Journal of Molecular Biology
, vol.312
, Issue.4
, pp. 849-863
-
-
Gorski, S.A.1
Capaldi, A.P.2
Kleanthous, C.3
Radford, S.E.4
-
39
-
-
33144462415
-
Sulfate-induced effects in the on-pathway intermediate of the bacterial immunity protein Im7*
-
DOI 10.1021/bi0521238
-
Cobos E.S., and Radford S.E. Sulfate-induced effects in the on-pathway intermediate of the bacterial immunity protein Im7 Biochemistry 45 2006 2274 2282 (Pubitemid 43271327)
-
(2006)
Biochemistry
, vol.45
, Issue.7
, pp. 2274-2282
-
-
Cobos, E.S.1
Radford, S.E.2
-
40
-
-
33846073474
-
Distinguishing between cooperative and unimodal downhill protein folding
-
DOI 10.1073/pnas.0609717104
-
Huang F., Sato S., Sharpe T.D., Ying L., and Fersht A.R. Distinguishing between cooperative and unimodal downhill protein folding Proc. Natl Acad. Sci. USA 104 2007 123 127 (Pubitemid 46067995)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.1
, pp. 123-127
-
-
Huang, F.1
Sato, S.2
Sharpe, T.D.3
Ying, L.4
Fersht, A.R.5
-
41
-
-
79551684199
-
The folding of single domain proteins-have we reached a consensus?
-
Sosnick T.R., and Barrick D. The folding of single domain proteins-have we reached a consensus? Curr. Opin. Struct. Biol. 21 2011 12 24
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 12-24
-
-
Sosnick, T.R.1
Barrick, D.2
-
43
-
-
33748460691
-
Urea-induced unfolding of the immunity protein Im9 monitored by spFRET
-
Tezuka-Kawakami T., Gell C., Brockwell D.J., Radford S.E., and Smith D.A. Urea-induced unfolding of the immunity protein Im9 monitored by spFRET Biophys. J. 91 2006 42 44
-
(2006)
Biophys. J.
, vol.91
, pp. 42-44
-
-
Tezuka-Kawakami, T.1
Gell, C.2
Brockwell, D.J.3
Radford, S.E.4
Smith, D.A.5
-
44
-
-
77957092799
-
Charge interactions can dominate the dimensions of intrinsically disordered proteins
-
Muller-Spath S., Soranno A., Hirschfeld V., Hofmann H., Ruegger S., and Reymond L. Charge interactions can dominate the dimensions of intrinsically disordered proteins Proc. Natl Acad. Sci. USA 107 2010 14609 14614
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 14609-14614
-
-
Muller-Spath, S.1
Soranno, A.2
Hirschfeld, V.3
Hofmann, H.4
Ruegger, S.5
Reymond, L.6
-
45
-
-
28444431959
-
Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins
-
DOI 10.1073/pnas.0508584102
-
Laurence T.A., Kong X., Jager M., and Weiss S. Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins Proc. Natl Acad. Sci. USA 102 2005 17348 17353 (Pubitemid 41740869)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.48
, pp. 17348-17353
-
-
Laurence, T.A.1
Kong, X.2
Jager, M.3
Weiss, S.4
-
46
-
-
38349122467
-
Coulomb forces control the density of the collapsed unfolded state of barstar
-
Hofmann H., Golbik R.P., Ott M., Hubner C.G., and Ulbrich-Hofmann R. Coulomb forces control the density of the collapsed unfolded state of barstar J. Mol. Biol. 376 2008 597 605
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 597-605
-
-
Hofmann, H.1
Golbik, R.P.2
Ott, M.3
Hubner, C.G.4
Ulbrich-Hofmann, R.5
-
47
-
-
0033554852
-
Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques
-
Wilkins D.K., Grimshaw S.B., Receveur V., Dobson C.M., Jones J.A., and Smith L.J. Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques Biochemistry 38 1999 16424 16431
-
(1999)
Biochemistry
, vol.38
, pp. 16424-16431
-
-
Wilkins, D.K.1
Grimshaw, S.B.2
Receveur, V.3
Dobson, C.M.4
Jones, J.A.5
Smith, L.J.6
-
48
-
-
0028886403
-
Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 2. Cognate and noncognate interactions that span the millimolar to femtomolar affinity range
-
Wallis R., Leung K.Y., Pommer A.J., Videler H., Moore G.R., James R., and Kleanthous C. Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 2. Cognate and noncognate interactions that span the millimolar to femtomolar affinity range Biochemistry 34 1995 13751 13759
-
(1995)
Biochemistry
, vol.34
, pp. 13751-13759
-
-
Wallis, R.1
Leung, K.Y.2
Pommer, A.J.3
Videler, H.4
Moore, G.R.5
James, R.6
Kleanthous, C.7
-
49
-
-
0002347541
-
The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein
-
DOI 10.1016/S0969-2126(99)80012-4
-
Ko T.P., Liao C.C., Ku W.Y., Chak K.F., and Yuan H.S. The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein Structure 7 1999 91 102 (Pubitemid 29159185)
-
(1999)
Structure
, vol.7
, Issue.1
, pp. 91-102
-
-
Ko, T.-P.1
Liao, C.-C.2
Ku, W.-Y.3
Chak, K.-F.4
Yuan, H.S.5
-
50
-
-
24944513908
-
Rapid detection of colicin E9-induced DNA damage using Escherichia coli cells carrying SOS promoter-lux fusions
-
Vankemmelbeke M., Healy B., Moore G.R., Kleanthous C., Penfold C.N., and James R. Rapid detection of colicin E9-induced DNA damage using Escherichia coli cells carrying SOS promoter-lux fusions J. Bacteriol. 187 2005 6601
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6601
-
-
Vankemmelbeke, M.1
Healy, B.2
Moore, G.R.3
Kleanthous, C.4
Penfold, C.N.5
James, R.6
-
51
-
-
47549106882
-
Applications of isothermal titration calorimetry in protein science
-
DOI 10.1111/j.1745-7270.2008.00437.x
-
Liang Y. Applications of isothermal titration calorimetry in protein science Biochim. Biophys. Acta 40 2008 565 576 (Pubitemid 352009079)
-
(2008)
Acta Biochimica et Biophysica Sinica
, vol.40
, Issue.7
, pp. 565-576
-
-
Liang, Y.1
-
52
-
-
1542358785
-
Highly Discriminating Protein-Protein Interaction Specificities in the Context of a Conserved Binding Energy Hotspot
-
DOI 10.1016/j.jmb.2004.02.005, PII S0022283604001512
-
Li W., Keeble A.H., Giffard C., James R., Moore G.R., and Kleanthous C. Highly discriminating protein-protein interaction specificities in the context of a conserved binding energy hotspot J. Mol. Biol. 337 2004 743 759 (Pubitemid 38326888)
-
(2004)
Journal of Molecular Biology
, vol.337
, Issue.3
, pp. 743-759
-
-
Li, W.1
Keeble, A.H.2
Giffard, C.3
James, R.4
Moore, G.R.5
Kleanthous, C.6
-
53
-
-
79954427635
-
Random coil chemical shift for intrinsically disordered proteins: Effects of temperature and pH
-
Kjaergaard M., Brander S., and Poulsen F.M. Random coil chemical shift for intrinsically disordered proteins: effects of temperature and pH J. Biomol. NMR 49 2011 139 149
-
(2011)
J. Biomol. NMR
, vol.49
, pp. 139-149
-
-
Kjaergaard, M.1
Brander, S.2
Poulsen, F.M.3
-
54
-
-
80051704532
-
Sequence correction of random coil chemical shifts: Correlation between neighbor correction factors and changes in the Ramachandran distribution
-
Kjaergaard M., and Poulsen F.M. Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution J. Biomol. NMR 50 2011 157 165
-
(2011)
J. Biomol. NMR
, vol.50
, pp. 157-165
-
-
Kjaergaard, M.1
Poulsen, F.M.2
-
56
-
-
0029978353
-
Analysis of main chain torsion angles in proteins: Prediction of NMR coupling constants for native and random coil conformations
-
DOI 10.1006/jmbi.1996.0041
-
Smith L.J., Bolin K.A., Schwalbe H., MacArthur M.W., Thornton J.M., and Dobson C.M. Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations J. Mol. Biol. 255 1996 494 506 (Pubitemid 26105572)
-
(1996)
Journal of Molecular Biology
, vol.255
, Issue.3
, pp. 494-506
-
-
Smith, L.J.1
Bolin, K.A.2
Schwalbe, H.3
MacArthur, M.W.4
Thornton, J.M.5
Dobson, C.M.6
-
57
-
-
0347610773
-
13C nuclear magnetic resonance chemical shifts
-
13C nuclear magnetic resonance chemical shifts J. Am. Chem. Soc. 113 1991 5490 5492
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 5490-5492
-
-
Spera, S.1
Bax, A.2
-
59
-
-
33751552347
-
Sensitivity of secondary structure propensities to sequence differences between α- and γ-synuclein: Implications for fibrillation
-
DOI 10.1110/ps.062465306
-
Marsh J.A., Singh V.K., Jia Z.C., and Forman-Kay J.D. Sensitivity of secondary structure propensities to sequence differences between α- and γ-synuclein: implications for fibrillation Protein Sci. 15 2006 2795 2804 (Pubitemid 44833760)
-
(2006)
Protein Science
, vol.15
, Issue.12
, pp. 2795-2804
-
-
Marsh, J.A.1
Singh, V.K.2
Jia, Z.3
Forman-Kay, J.D.4
-
60
-
-
0032553332
-
Elucidating the folding problem of α-helices: Local motifs, long-range electrostatics, lonic-strength dependence and prediction of NMR parameters
-
DOI 10.1006/jmbi.1998.2145
-
Lacroix E., Viguera A.R., and Serrano L. Elucidating the folding problem of α-helices: local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters J. Mol. Biol. 284 1998 173 191 (Pubitemid 28524004)
-
(1998)
Journal of Molecular Biology
, vol.284
, Issue.1
, pp. 173-191
-
-
Lacroix, E.1
Viguera, A.R.2
Serrano, L.3
-
61
-
-
0022412192
-
Hydrophobicity of amino acid residues in globular proteins
-
Rose G.D., Geselowitz A.R., Lesser G.J., Lee R.H., and Zehfus M.H. Hydrophobicity of amino-acid residues in globular proteins Science 229 1985 834 838 (Pubitemid 16246583)
-
(1985)
Science
, vol.229
, Issue.4716
, pp. 834-838
-
-
Rose, G.D.1
Geselowitz, A.R.2
Lesser, G.J.3
-
63
-
-
0024449503
-
15N inverse detected heteronuclear NMR spectroscopy: Application to staphylococcal nuclease
-
15N inverse detected heteronuclear NMR spectroscopy-application to staphylococcal nuclease Biochemistry 28 1989 8972 8979 (Pubitemid 19283459)
-
(1989)
Biochemistry
, vol.28
, Issue.23
, pp. 8972-8979
-
-
Kay, L.E.1
Torchia, D.A.2
Bax, A.3
-
64
-
-
0035957221
-
NMR structural and dynamic characterization of the acid-unfolded state of apomyoglobin provides insights into the early events in protein folding
-
DOI 10.1021/bi002776i
-
Yao J., Chung J., Eliezer D., Wright P.E., and Dyson H.J. NMR structural and dynamic characterization of the acid-unfolded state of apomyoglobin provides insights into the early events in protein folding Biochemistry 40 2001 3561 3571 (Pubitemid 32242813)
-
(2001)
Biochemistry
, vol.40
, Issue.12
, pp. 3561-3571
-
-
Yao, J.1
Chung, J.2
Eliezer, D.3
Wright, P.E.4
Dyson, H.J.5
-
65
-
-
0027988297
-
Backbone dynamics of a highly disordered 131 residue fragment of staphylococcal nuclease
-
DOI 10.1006/jmbi.1994.1598
-
Alexandrescu A.T., and Shortle D. Backbone dynamics of a highly disordered 131 residue fragment of staphylococcal nuclease J. Mol. Biol. 242 1994 527 546 (Pubitemid 24327214)
-
(1994)
Journal of Molecular Biology
, vol.242
, Issue.4
, pp. 527-546
-
-
Alexandrescu, A.T.1
Shortle, D.2
-
68
-
-
19544369340
-
Direct characterization of the folded, unfolded and urea-denatured states of the C-terminal domain of the ribosomal protein L9
-
DOI 10.1016/j.jmb.2005.04.017, PII S0022283605004274
-
Li Y., Picart F., and Raleigh D.P. Direct characterization of the folded, unfolded and urea-denatured states of the C-terminal domain of the ribosomal protein L9 J. Mol. Biol. 349 2005 839 846 (Pubitemid 40731534)
-
(2005)
Journal of Molecular Biology
, vol.349
, Issue.4
, pp. 839-846
-
-
Li, Y.1
Picart, F.2
Raleigh, D.P.3
-
69
-
-
0035919635
-
Persistence of native-like topology in a denatured protein in 8 M urea
-
DOI 10.1126/science.1060438
-
Shortle D., and Ackerman M.S. Persistence of native-like topology in a denatured protein in 8 M urea Science 293 2001 487 489 (Pubitemid 32679075)
-
(2001)
Science
, vol.293
, Issue.5529
, pp. 487-489
-
-
Shortle, D.1
Ackerman, M.S.2
-
70
-
-
70350532228
-
Non-sequence-specific interactions can account for the compaction of proteins unfolded under "native" conditions
-
Kohn J.E., Gillespie B., and Plaxco K.W. Non-sequence-specific interactions can account for the compaction of proteins unfolded under "native" conditions J. Mol. Biol. 394 2009 343 350
-
(2009)
J. Mol. Biol.
, vol.394
, pp. 343-350
-
-
Kohn, J.E.1
Gillespie, B.2
Plaxco, K.W.3
-
71
-
-
67749142097
-
Protein folding, protein collapse, and tanford's transfer model: Lessons from single-molecule FRET
-
Ziv G., and Haran G. Protein folding, protein collapse, and tanford's transfer model: lessons from single-molecule FRET J. Am. Chem. Soc. 131 2009 2942 2947
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 2942-2947
-
-
Ziv, G.1
Haran, G.2
-
72
-
-
0035930026
-
Slow dynamics in folded and unfolded states of an SH3 domain
-
DOI 10.1021/ja011300z
-
Tollinger M., Skrynnikov N.R., Mulder F.A., Forman-Kay J.D., and Kay L.E. Slow dynamics in folded and unfolded states of an SH3 domain J. Am. Chem. Soc. 123 2001 11341 11352 (Pubitemid 33070591)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.46
, pp. 11341-11352
-
-
Tollinger, M.1
Skrynnikov, N.R.2
Mulder, F.A.A.3
Forman-Kay, J.D.4
Kay, L.E.5
-
73
-
-
15244342213
-
Formation of native and non-native interactions in ensembles of denatured ACBP molecules from paramagnetic relaxation enhancement studies
-
DOI 10.1016/j.jmb.2005.01.009
-
Kristjansdottir S., Lindorff-Larsen K., Fieber W., Dobson C.M., Vendruscolo M., and Poulsen F.M. Formation of native and non-native interactions in ensembles of denatured ACBP molecules from paramagnetic relaxation enhancement studies J. Mol. Biol. 347 2005 1053 1062 (Pubitemid 40387452)
-
(2005)
Journal of Molecular Biology
, vol.347
, Issue.5
, pp. 1053-1062
-
-
Kristjansdottir, S.1
Lindorff-Larsen, K.2
Fieber, W.3
Dobson, C.M.4
Vendruscolo, M.5
Poulsen, F.M.6
-
74
-
-
77953627413
-
NMR characterization of long-range order in intrinsically disordered proteins
-
Salmon L., Nodet G., Ozenne V., Yin G., Jensen M.R., Zweckstetter M., and Blackledge M. NMR characterization of long-range order in intrinsically disordered proteins J. Am. Chem. Soc. 132 2010 8407 8418
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 8407-8418
-
-
Salmon, L.1
Nodet, G.2
Ozenne, V.3
Yin, G.4
Jensen, M.R.5
Zweckstetter, M.6
Blackledge, M.7
-
75
-
-
0037686252
-
The present view of the mechanism of protein folding
-
DOI 10.1038/nrm1126
-
Daggett V., and Fersht A. The present view of the mechanism of protein folding Nat. Rev., Mol. Cell Biol. 4 2003 497 502 (Pubitemid 36648595)
-
(2003)
Nature Reviews Molecular Cell Biology
, vol.4
, Issue.6
, pp. 497-502
-
-
Daggett, V.1
Fersht, A.2
-
76
-
-
0035836687
-
Protein folding from a highly disordered denatured state: The folding pathway of chymotrypsin inhibitor 2 at atomic resolution
-
DOI 10.1073/pnas.071054398
-
Kazmirski S.L., Wong K.B., Freund S.M.V., Tan Y.J., Fersht A.R., and Daggett V. Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution Proc. Natl Acad. Sci. USA 98 2001 4349 4354 (Pubitemid 32294980)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.8
, pp. 4349-4354
-
-
Kazmirski, S.L.1
Wong, K.-B.2
Freund, S.M.V.3
Tan, Y.-J.4
Fersht, A.R.5
Daggett, V.6
-
77
-
-
79955032444
-
Malleability of folding intermediates in the homeodomain superfamily
-
Banachewicz W., Religa T.L., Schaeffer R.D., Daggett V., and Fersht A.R. Malleability of folding intermediates in the homeodomain superfamily Proc. Natl Acad. Sci. USA 108 2011 5596 5601
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 5596-5601
-
-
Banachewicz, W.1
Religa, T.L.2
Schaeffer, R.D.3
Daggett, V.4
Fersht, A.R.5
-
78
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
-
Schuck P. Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling Biophys. J. 78 2000 1606 1619 (Pubitemid 30141584)
-
(2000)
Biophysical Journal
, vol.78
, Issue.3
, pp. 1606-1619
-
-
Schuck, P.1
-
79
-
-
0042855798
-
On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation
-
DOI 10.1016/S0003-2697(03)00289-6
-
Schuck P. On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation Anal. Biochem. 320 2003 104 124 (Pubitemid 36937072)
-
(2003)
Analytical Biochemistry
, vol.320
, Issue.1
, pp. 104-124
-
-
Schuck, P.1
-
80
-
-
0036707991
-
Modern analytical ultracentrifugation in protein science: A tutorial review
-
DOI 10.1110/ps.0207702
-
Lebowitz J., Lewis M.S., and Schuck P. Modern analytical ultracentrifugation in protein science: a tutorial review Protein Sci. 11 2002 2067 2079 (Pubitemid 34919611)
-
(2002)
Protein Science
, vol.11
, Issue.9
, pp. 2067-2079
-
-
Lebowitz, J.1
Lewis, M.S.2
Schuck, P.3
-
81
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio F., Grzesiek S., Vuister G.W., Zhu G., Pfeifer J., and Bax A. NMRPipe: a multidimensional spectral processing system based on UNIX pipes J. Biomol. NMR 6 1995 277 293
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
82
-
-
34249765651
-
NMRView: A computer program for the visualization and analysis of NMR data
-
Johnson B.A., and Blevins R.A. NMRView: a computer program for the visualization and analysis of NMR data J. Biomol. NMR 4 1994 603 614
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 603-614
-
-
Johnson, B.A.1
Blevins, R.A.2
-
84
-
-
0017157584
-
A simplified representation of protein conformations for rapid simulation of protein folding
-
Levitt M. A simplified representation of protein conformations for rapid simulation of protein folding J. Mol. Biol. 104 1976 59 107
-
(1976)
J. Mol. Biol.
, vol.104
, pp. 59-107
-
-
Levitt, M.1
-
85
-
-
0034836367
-
Sequence-dependent correction of random coil NMR chemical shifts
-
DOI 10.1021/ja003760i
-
Schwarzinger S., Kroon G.J.A., Foss T.R., Chung J., Wright P.E., and Dyson H.J. Sequence-dependent correction of random coil NMR chemical shifts J. Am. Chem. Soc. 123 2001 2970 2978 (Pubitemid 32879567)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.13
, pp. 2970-2978
-
-
Schwarzinger, S.1
Kroon, G.J.A.2
Foss, T.R.3
Chung, J.4
Wright, P.E.5
Dyson, H.J.6
|