Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 1, 2006, Pages 99-104

  Gsponer, Joerg ^a   Hopearuoho, Harri ^a   Whittaker, Sara B M ^b   Spence, Graham R ^c   Moore, Geoffrey R ^b   Paci, Emanuele ^c   Radford, Sheena E ^c   Vendruscolo, Michele ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b UNIVERSITY OF EAST ANGLIA   (United Kingdom)

^c UNIVERSITY OF LEEDS   (United Kingdom)

Author keywords

Hydrogen exchange; Protein folding; Protein intermediates

Indexed keywords

BACTERIAL IMMUNITY PROTEIN IM7; HYDROGEN; PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL IMMUNITY; HYDROPHOBICITY; KINETICS; MOLECULAR DYNAMICS; NONHUMAN; PREDICTION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE; PROTON TRANSPORT; RAMAN SPECTROMETRY; STATISTICAL ANALYSIS; STRUCTURE ANALYSIS; ULTRAVIOLET SPECTROSCOPY;

BIOPHYSICS; CARRIER PROTEINS; ESCHERICHIA COLI PROTEINS; FLUORESCENCE; KINETICS; MODELS, MOLECULAR; MUTATION; PROTEIN CONFORMATION; PROTEIN FOLDING; SPECTRUM ANALYSIS, RAMAN;

BACTERIA (MICROORGANISMS);

EID: 30444450687     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0508667102     Document Type: Article

References (34)

1. Rumbley, J., Hoang, L., Mayne, L. & Englander, S. W. (2001) Proc. Natl. Acad. Sci. USA 98, 105-112.
2. Parker, M. J. & Marqusee, S. (2001) J. Mol. Biol. 305, 593-602.
3. Teilum, K., Maki, K., Kragelund, B. B., Poulsen, F. M. & Roder, H. (2002) Proc. Natl. Acad. Sci. USA 99, 9807-9812.
4. Capaldi, A. F., Kleanthous, C. & Radford, S. E. (2002) Nat. Struct. Biol. 9, 209-216.
5. Sanchez, I. E. & Kiefhaber, T. (2003) J. Mol. Biol. 325, 367-376.
6. Jemth, F., Gianni, S., Day, R., Li, B., Johnson, C. M., Daggett, V. & Fersht, A. R. (2004) Proc. Natl. Acad. Sci. USA 101, 6450-6455.
7. Gorski, S. A., Le Duff, C. S., Capaldi, A. P., Kalverda, A. P., Beddard, G. S., Moore, G. R. & Radford, S. E. (2004) J. Mol. Biol. 337, 183-193.
8. Cliff, M. J., Higgins, L. D., Sessions, R. B., Waltho, J. P. & Clarke, A. R. (2004) J. Mol. Biol. 336, 497-508.
9. Feng, F. H. Q., Zhou, Z. & Bai, Y. W. (2005) Proc. Natl. Acad. Sci. USA 102, 5026-5031.
10. Maity, H., Maity, M., Krishna, M. M. G., Mayne, L. & Englander, S. W. (2005) Proc. Natl. Acad. Sci. USA 102, 4741-4746.
11. Nishimura, C., Dyson, J. H. & Wright, P. E. (2005) Proc. Natl. Acad. Sci. USA 102, 4765-4770.
12. Capaldi, A. P., Shastry, M. C., Kleanthous, C., Roder, H. & Radford, S. E. (2001) Nat. Struct. Biol. 8, 68-72.
13. Spence, G. R., Capaldi, A. P. & Radford, S. E. (2004) J. Mol. Biol. 341, 215-226.
14. Horovitz, A. & Fersht, A. R. (1992) J. Mol. Biol. 214, 613-617.
15. Best, R. B. & Vendruscolo, M. (2005) Structure (London), in press.
16. Paci, E. & Karplus, M. (1999) J. Mol. Biol. 288, 441-459.
17. Lazaridis, T. & Karplus, M. (1999) Proteins 35, 133-152.
18. Vendruscolo, M., Paci, E., Dobson, C. M. & Karplus, M. (2003) J. Am. Chem. Soc. 125, 15686-15687.
19. Miller, D. W. & Dill, K. A. (1987) Protein Sci. 196, 641-656.
20. Hilser, V. J. & Freire, E. (1996) J. Mol. Biol. 262, 765-772.
21. Sheinerman, F. B. & Brooks, C. L. (1998) Proc. Natl. Acad. Sci. USA 95, 1562-1567.
22. Bahar, I., Wallqvist, A., Covell, D. G. & Jernigan, R. L. (1998) Biochemistry 37, 1067-1075.
23. Garcia, A. E. & Hummer, G. (1999) Proteins 36, 175-191.
24. Viguera, A. R. & Serrano, L. (2003) Proc. Natl. Acad. Sci. USA 100, 5730-5735.
25. Weinkam, P., Zong, C. & Wolynes, P. G. (2005) Proc. Natl. Acad. Sci. USA 102, 12401-12406.
26. Paci, E., Vendruscolo, M., Dobson, C. M. & Karplus, M. (2002) J. Mol. Biol. 324, 151-163.
27. Wishart, D. S., Bigam, C. G., Yao, J., Abildgaard, F., Dyson, H. J., Oldfield, E., Markley, J. L. & Sykes, B. D. (1995) J. Biomol. NMR 6, 135-140.
28. Neal, S., Nip, A. M., Zhang, H. & Wishart, D. S. (2003) J. Biomol. NMR 26, 215-240.
29. Ayed, A., Mulder, F. A. A., Yi, G. S., Lu, Y., Kay, L. E. & Arrowsmith, C. H. (2001) Nat. Struct. Biol. 9, 756-760.
30. MacKerell, A. D., Jr., Bashford, D., Bellot, M., Dunbrack, R. L. J., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., et al. (1998) J. Phys. Chem. B 102, 3586-3616.
31. Lindorff-Larsen, K., Paci, E., Serrano, L., Dobson, C. M. & Vendruscolo, M. (2003) Biophys. J. 85, 1207-1214.
32. Fersht, A. R. (2004) Proc. Natl. Acad. Sci. USA 101, 14338-14342.
33. Rodriguez-Mendieta, I. R., Spence, G. R., Gell, C., Radford, S. E. & Smith, D. A. (2005) Biochemistry 44, 3306-3315.
34. Dennis, C. A., Videler, H., Pauptit, R. A., Wallis, R., James, R., Kleanthous, C. & Moore, G. R. (1998) Biochem. J. 333, 183-191.