메뉴 건너뛰기




Volumn 349, Issue 4, 2005, Pages 839-846

Direct characterization of the folded, unfolded and urea-denatured states of the C-terminal domain of the ribosomal protein L9

Author keywords

C terminal domain of L9; NMR; Protein folding; Radius of hydration; Unfolded state

Indexed keywords

RIBOSOME PROTEIN; RIBOSOME PROTEIN L9; UNCLASSIFIED DRUG; UREA;

EID: 19544369340     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.04.017     Document Type: Article
Times cited : (29)

References (32)
  • 1
    • 0036400348 scopus 로고    scopus 로고
    • A new perspective on unfolded proteins
    • R.L. Baldwin A new perspective on unfolded proteins Advan. Protein Chem. 62 2002 361 367
    • (2002) Advan. Protein Chem. , vol.62 , pp. 361-367
    • Baldwin, R.L.1
  • 2
    • 0036400715 scopus 로고    scopus 로고
    • Insights into the structure and dynamics of unfolded proteins from nuclear magnetic resonance
    • H.J. Dyson, and P.E. Wright Insights into the structure and dynamics of unfolded proteins from nuclear magnetic resonance Advan. Protein Chem. 62 2002 311 340
    • (2002) Advan. Protein Chem. , vol.62 , pp. 311-340
    • Dyson, H.J.1    Wright, P.E.2
  • 4
    • 0030032461 scopus 로고    scopus 로고
    • The denatured state (the other half of the folding equation) and its role in protein stability
    • D. Shortle The denatured state (the other half of the folding equation) and its role in protein stability FASEB J. 10 1996 27 34
    • (1996) FASEB J. , vol.10 , pp. 27-34
    • Shortle, D.1
  • 6
    • 0030320442 scopus 로고    scopus 로고
    • The concept of a random coil. Residual structure in peptides and denatured proteins
    • L.J. Smith, K.M. Fiebig, H. Schwalbe, and C.M. Dobson The concept of a random coil. Residual structure in peptides and denatured proteins Fold Des. 1 1996 R95 R106
    • (1996) Fold Des. , vol.1
    • Smith, L.J.1    Fiebig, K.M.2    Schwalbe, H.3    Dobson, C.M.4
  • 7
    • 0014364651 scopus 로고
    • Protein denaturation
    • C. Tanford Protein denaturation Advan. Protein Chem. 23 1968 121 282
    • (1968) Advan. Protein Chem. , vol.23 , pp. 121-282
    • Tanford, C.1
  • 9
    • 0035919635 scopus 로고    scopus 로고
    • Persistence of native-like topology in a denatured protein in 8 M urea
    • D. Shortle, and M.S. Ackerman Persistence of native-like topology in a denatured protein in 8 M urea Science 293 2001 487 489
    • (2001) Science , vol.293 , pp. 487-489
    • Shortle, D.1    Ackerman, M.S.2
  • 11
    • 0036401140 scopus 로고    scopus 로고
    • Toward a taxonomy of the denatured state: Small angle scattering studies of unfolded proteins
    • I.S. Millett, S. Doniach, and K.W. Plaxco Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins Advan. Protein Chem. 62 2002 241 262
    • (2002) Advan. Protein Chem. , vol.62 , pp. 241-262
    • Millett, I.S.1    Doniach, S.2    Plaxco, K.W.3
  • 12
    • 0026672305 scopus 로고
    • NMR determination of residual structure in a urea-denatured protein, the 434-repressor
    • D. Neri, M. Billeter, G. Wider, and K. Wuthrich NMR determination of residual structure in a urea-denatured protein, the 434-repressor Science 257 1992 1559 1563
    • (1992) Science , vol.257 , pp. 1559-1563
    • Neri, D.1    Billeter, M.2    Wider, G.3    Wuthrich, K.4
  • 13
    • 0033852796 scopus 로고    scopus 로고
    • Charge-charge interactions influence the denatured state ensemble and contribute to protein stability
    • C.N. Pace, R.W. Alston, and K.L. Shaw Charge-charge interactions influence the denatured state ensemble and contribute to protein stability Protein Sci. 9 2000 1395 1398
    • (2000) Protein Sci. , vol.9 , pp. 1395-1398
    • Pace, C.N.1    Alston, R.W.2    Shaw, K.L.3
  • 14
    • 0030596513 scopus 로고    scopus 로고
    • 13C NMR assignment and characterisation of residual structure
    • 13C NMR assignment and characterisation of residual structure J. Mol. Biol. 259 1996 805 818
    • (1996) J. Mol. Biol. , vol.259 , pp. 805-818
    • Wong, K.B.1    Freund, S.M.2    Fersht, A.R.3
  • 15
    • 0030900199 scopus 로고    scopus 로고
    • NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions
    • O. Zhang, and J.D. Forman-Kay NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions Biochemistry 36 1997 3959 3970
    • (1997) Biochemistry , vol.36 , pp. 3959-3970
    • Zhang, O.1    Forman-Kay, J.D.2
  • 16
    • 0029036496 scopus 로고
    • Structural characterization of folded and unfolded states of an SH3 domain in equilibrium in aqueous buffer
    • O. Zhang, and J.D. Forman-Kay Structural characterization of folded and unfolded states of an SH3 domain in equilibrium in aqueous buffer Biochemistry 34 1995 6784 6794
    • (1995) Biochemistry , vol.34 , pp. 6784-6794
    • Zhang, O.1    Forman-Kay, J.D.2
  • 17
    • 0033546123 scopus 로고    scopus 로고
    • NOE data demonstrating a compact unfolded state for an SH3 domain under non-denaturing conditions
    • Y.K. Mok, C.M. Kay, L.E. Kay, and J. Forman-Kay NOE data demonstrating a compact unfolded state for an SH3 domain under non-denaturing conditions J. Mol. Biol. 289 1999 619 638
    • (1999) J. Mol. Biol. , vol.289 , pp. 619-638
    • Mok, Y.K.1    Kay, C.M.2    Kay, L.E.3    Forman-Kay, J.4
  • 18
    • 0025865522 scopus 로고
    • Hydrophobic clustering in nonnative states of a protein: Interpretation of chemical shifts in NMR spectra of denatured states of lysozyme
    • P.A. Evans, K.D. Topping, D.N. Woolfson, and C.M. Dobson Hydrophobic clustering in nonnative states of a protein: interpretation of chemical shifts in NMR spectra of denatured states of lysozyme Proteins: Struct. Funct. Genet. 9 1991 248 266
    • (1991) Proteins: Struct. Funct. Genet. , vol.9 , pp. 248-266
    • Evans, P.A.1    Topping, K.D.2    Woolfson, D.N.3    Dobson, C.M.4
  • 19
    • 0142185492 scopus 로고    scopus 로고
    • The denatured state of engrailed homeodomain under denaturing and native conditions
    • U. Mayor, J.G. Grossmann, N.W. Foster, S.M. Freund, and A.R. Fersht The denatured state of engrailed homeodomain under denaturing and native conditions J. Mol. Biol. 333 2003 977 991
    • (2003) J. Mol. Biol. , vol.333 , pp. 977-991
    • Mayor, U.1    Grossmann, J.G.2    Foster, N.W.3    Freund, S.M.4    Fersht, A.R.5
  • 20
    • 0030596154 scopus 로고    scopus 로고
    • Ribosomal protein L9: A structure determination by the combined use of X-ray crystallography and NMR spectroscopy
    • D.W. Hoffman, C.S. Cameron, C. Davies, S.W. White, and V. Ramakrishnan Ribosomal protein L9: a structure determination by the combined use of X-ray crystallography and NMR spectroscopy J. Mol. Biol. 264 1996 1058 1071
    • (1996) J. Mol. Biol. , vol.264 , pp. 1058-1071
    • Hoffman, D.W.1    Cameron, C.S.2    Davies, C.3    White, S.W.4    Ramakrishnan, V.5
  • 21
    • 0036302125 scopus 로고    scopus 로고
    • PH-dependent stability and folding kinetics of a protein with an unusual alpha-beta topology: The C-terminal domain of the ribosomal protein L9
    • S. Sato, and D.P. Raleigh pH-dependent stability and folding kinetics of a protein with an unusual alpha-beta topology: the C-terminal domain of the ribosomal protein L9 J. Mol. Biol. 318 2002 571 582
    • (2002) J. Mol. Biol. , vol.318 , pp. 571-582
    • Sato, S.1    Raleigh, D.P.2
  • 22
    • 9644303208 scopus 로고    scopus 로고
    • Analysis of the pH-dependent folding and stability of histidine point mutants allows characterization of the denatured state and transition state for protein folding
    • J.C. Horng, J.H. Cho, and D.P. Raleigh Analysis of the pH-dependent folding and stability of histidine point mutants allows characterization of the denatured state and transition state for protein folding J. Mol. Biol. 345 2005 163 173
    • (2005) J. Mol. Biol. , vol.345 , pp. 163-173
    • Horng, J.C.1    Cho, J.H.2    Raleigh, D.P.3
  • 23
    • 0033554852 scopus 로고    scopus 로고
    • Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques
    • D.K. Wilkins, S.B. Grimshaw, V. Receveur, C.M. Dobson, J.A. Jones, and L.J. Smith Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques Biochemistry 38 1999 16424 16431
    • (1999) Biochemistry , vol.38 , pp. 16424-16431
    • Wilkins, D.K.1    Grimshaw, S.B.2    Receveur, V.3    Dobson, C.M.4    Jones, J.A.5    Smith, L.J.6
  • 24
    • 0033608968 scopus 로고    scopus 로고
    • Folding of the multidomain ribosomal protein L9: The two domains fold independently with remarkably different rates
    • S. Sato, B. Kuhlman, W.J. Wu, and D.P. Raleigh Folding of the multidomain ribosomal protein L9: the two domains fold independently with remarkably different rates Biochemistry 38 1999 5643 5650
    • (1999) Biochemistry , vol.38 , pp. 5643-5650
    • Sato, S.1    Kuhlman, B.2    Wu, W.J.3    Raleigh, D.P.4
  • 25
    • 0034581327 scopus 로고    scopus 로고
    • Role of the molten globule state in protein folding
    • M. Arai, and K. Kuwajima Role of the molten globule state in protein folding Advan. Protein Chem. 53 2000 209 282
    • (2000) Advan. Protein Chem. , vol.53 , pp. 209-282
    • Arai, M.1    Kuwajima, K.2
  • 26
    • 0026602704 scopus 로고
    • Urea denaturation of barnase: PH dependence and characterization of the unfolded state
    • C.N. Pace, D.V. Laurents, and R.E. Erickson Urea denaturation of barnase: pH dependence and characterization of the unfolded state Biochemistry 31 1992 2728 2734
    • (1992) Biochemistry , vol.31 , pp. 2728-2734
    • Pace, C.N.1    Laurents, D.V.2    Erickson, R.E.3
  • 27
    • 0035933338 scopus 로고    scopus 로고
    • The origin of pH-dependent changes in m-values for the denaturant-induced unfolding of proteins
    • S.T. Whitten, J.O. Wooll, R. Razeghifard, B.G. E, and V.J. Hilser The origin of pH-dependent changes in m-values for the denaturant-induced unfolding of proteins J. Mol. Biol. 309 2001 1165 1175
    • (2001) J. Mol. Biol. , vol.309 , pp. 1165-1175
    • Whitten, S.T.1    Wooll, J.O.2    Razeghifard, R.3    Hilser, V.J.4
  • 28
    • 0032497321 scopus 로고    scopus 로고
    • Protein denaturation: A small-angle X-ray scattering study of the ensemble of unfolded states of cytochrome c
    • D.J. Segel, A.L. Fink, K.O. Hodgson, and S. Doniach Protein denaturation: a small-angle X-ray scattering study of the ensemble of unfolded states of cytochrome c Biochemistry 37 1998 12443 12451
    • (1998) Biochemistry , vol.37 , pp. 12443-12451
    • Segel, D.J.1    Fink, A.L.2    Hodgson, K.O.3    Doniach, S.4
  • 29
    • 4344704080 scopus 로고    scopus 로고
    • Reassessing random-coil statistics in unfolded proteins
    • N.C. Fitzkee, and G.D. Rose Reassessing random-coil statistics in unfolded proteins Proc. Natl Acad. Sci. USA 101 2004 12497 12502 Epub 2004 Aug 16
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 12497-12502
    • Fitzkee, N.C.1    Rose, G.D.2
  • 30
    • 58149362694 scopus 로고
    • An improved diffusion-ordered spectroscopy experiment incorporating bipolar-gradient pulses
    • D. Wu, A. Chen, and C.S. Johnson Jr An improved diffusion-ordered spectroscopy experiment incorporating bipolar-gradient pulses J. Magn. Reson. A 115 1995 260 264
    • (1995) J. Magn. Reson. a , vol.115 , pp. 260-264
    • Wu, D.1    Chen, A.2    Johnson Jr., C.S.3
  • 31
    • 0000857723 scopus 로고    scopus 로고
    • Characterisation of protein unfolding by NMR diffusion measurements
    • J.A. Jones, D.K. Wilkins, L.J. Smith, and C.M. Dobson Characterisation of protein unfolding by NMR diffusion measurements J. Biomol. NMR 10 1997 199 203
    • (1997) J. Biomol. NMR , vol.10 , pp. 199-203
    • Jones, J.A.1    Wilkins, D.K.2    Smith, L.J.3    Dobson, C.M.4
  • 32
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • P.J. Kraulis MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallog. 24 1991 946 950
    • (1991) J. Appl. Crystallog. , vol.24 , pp. 946-950
    • Kraulis, P.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.