-
1
-
-
35348928731
-
Using multilocus sequence data to assess population structure, natural selection, and linkage disequilibrium in wild tomatoes
-
Arunyawat U, Stephan W, Städler T (2007). Using multilocus sequence data to assess population structure, natural selection, and linkage disequilibrium in wild tomatoes. Mol Biol Evol 24: 2310-2322.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2310-2322
-
-
Arunyawat, U.1
Stephan, W.2
Städler, T.3
-
2
-
-
0034850732
-
Species and recombination effects on dna variability in the tomato genus
-
Baudry E, Kerdelhué C, Innan H, Stephan W (2001). Species and recombination effects on DNA variability in the tomato genus. Genetics 158: 1725-1735.
-
(2001)
Genetics
, vol.158
, pp. 1725-1735
-
-
Baudry, E.1
Kerdelhué, C.2
Innan, H.3
Stephan, W.4
-
3
-
-
3042544623
-
The genomic rate of adaptive amino acid substitution in
-
Bierne N, Eyre-Walker A (2004). The genomic rate of adaptive amino acid substitution in Drosophila. Mol Biol Evol 21: 1350-1360.
-
(2004)
Drosophila. Mol Biol Evol
, vol.21
, pp. 1350-1360
-
-
Bierne, N.1
Eyre-Walker, A.2
-
5
-
-
0031450133
-
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
-
Charles worth B, Nordborg M, Charles worth D (1997). The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genet Res Camb 70: 155-174.
-
(1997)
Genet Res Camb
, vol.70
, pp. 155-174
-
-
Charles Worth, B.1
Nordborg, M.2
Charles Worth, D.3
-
6
-
-
34447546660
-
The distribution of fitness effects of new mutations
-
Eyre-Walker A, Keightley PD (2007). The distribution of fitness effects of new mutations. Nature Rev Genet 8: 610-618.
-
(2007)
Nature Rev Genet
, vol.8
, pp. 610-618
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
7
-
-
68949202924
-
Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change
-
Eyre-Walker A, Keightley PD (2009). Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change. Mol Biol Evol 26: 2097-2108.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2097-2108
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
8
-
-
0034924997
-
Positive and negative selection on the human genome
-
Fay JC, Wyckoff GJ, Wu Cl (2001). Positive and negative selection on the human genome. Genetics 158: 1227-1234.
-
(2001)
Genetics
, vol.158
, pp. 1227-1234
-
-
Fay, J.C.1
Wyckoff, G.J.2
Cl, W.3
-
9
-
-
58149347836
-
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A bayesian perspective
-
Foil M, Gaggiotti O (2008). A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180: 977-993.
-
(2008)
Genetics
, vol.180
, pp. 977-993
-
-
Foil, M.1
Gaggiotti, O.2
-
10
-
-
68149142374
-
Low frequency of mutations with strongly deleterious but nonlethal fitness effects
-
Fudala A, Korona R (2009). Low frequency of mutations with strongly deleterious but nonlethal fitness effects. Evolution 63: 2164-2171.
-
(2009)
Evolution
, vol.63
, pp. 2164-2171
-
-
Fudala, A.1
Korona, R.2
-
11
-
-
77954969511
-
Genome wide analyses reveal little evidence for adaptive evolution in many plant species
-
Gossmann TI, Song BH, Windsor AJ, Mitchell-Olds T, Dixon CJ, Kapralov MV et al. (2010). Genome wide analyses reveal little evidence for adaptive evolution in many plant species. Mol Biol Evol 27: 1822-1832.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1822-1832
-
-
Gossmann, T.I.1
Song, B.H.2
Windsor, A.J.3
Mitchell-Olds, T.4
Dixon, C.J.5
Kapralov, M.V.6
-
12
-
-
56649111423
-
A flexible forward simulator for populations subject to selection and demography
-
Hernandez RD (2008). A flexible forward simulator for populations subject to selection and demography. Bioinformatics 24: 2786-2787.
-
(2008)
Bioinformatics
, vol.24
, pp. 2786-2787
-
-
Hernandez, R.D.1
-
13
-
-
0032884653
-
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
-
Jareborg N, Birney E, Durbin R (1999). Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res 9: 815-824.
-
(1999)
Genome Res
, vol.9
, pp. 815-824
-
-
Jareborg, N.1
Birney, E.2
Durbin, R.3
-
14
-
-
36348988595
-
Gish analysis of meiotic chromosome pairing in solanum lycopersicoides introgression lines of cultivated tomato
-
Ji Y, Chetelat RT (2007). GISH analysis of meiotic chromosome pairing in Solanum lycopersicoides introgression lines of cultivated tomato. Genome 50: 825-833.
-
(2007)
Genome
, vol.50
, pp. 825-833
-
-
Ji, Y.1
Chetelat, R.T.2
-
15
-
-
51649095312
-
Gst and its relatives do not measure differentiation
-
St and its relatives do not measure differentiation. Mol Ecol 17: 4015-4026.
-
(2008)
Mol Ecol
, vol.17
, pp. 4015-4026
-
-
Jost, L.1
-
16
-
-
37249042614
-
Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies
-
Keightley PD, Eyre-Walker A (2007). Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies. Genetics 177: 2251-2261.
-
(2007)
Genetics
, vol.177
, pp. 2251-2261
-
-
Keightley, P.D.1
Eyre-Walker, A.2
-
17
-
-
77951600170
-
What can we learn about the distribution of fitness effects of new mutations from dna sequence data?
-
Keightley PD, Eyre-Walker A (2010). What can we learn about the distribution of fitness effects of new mutations from DNA sequence data? Phil Trans Roy Soc Lond 365: 1187-1193.
-
(2010)
Phil Trans Roy Soc Lond
, vol.365
, pp. 1187-1193
-
-
Keightley, P.D.1
Eyre-Walker, A.2
-
18
-
-
65649117685
-
Dnasp v5: A software for comprehensive analysis of dna polymorphism data
-
Librado P, Rozas J (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
19
-
-
33846886349
-
The fitness effect of mutations across environments: A survey in light of fitness landscape models
-
Martin G, Lenormand T (2006a). The fitness effect of mutations across environments: a survey in light of fitness landscape models. Evolution 60: 2413-2427.
-
(2006)
Evolution
, vol.60
, pp. 2413-2427
-
-
Martin, G.1
Lenormand, T.2
-
20
-
-
33747080569
-
A general multivariate extension of fisher's geometrical model and the distribution of mutation fitness effects across species
-
Martin G, Lenormand T (2006b). A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species. Evolution 60: 893-907.
-
(2006)
Evolution
, vol.60
, pp. 893-907
-
-
Martin, G.1
Lenormand, T.2
-
21
-
-
0026428610
-
Adaptive protein evolution at the adh locus in
-
McDonald JH, Kreitman M (1991). Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
-
(1991)
Drosophila. Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
22
-
-
77950101054
-
Ecological and geographic modes of species divergence in wild tomatoes
-
Nakazato T, Warren DL, Moyle LC (2010). Ecological and geographic modes of species divergence in wild tomatoes. Am J Bot 97: 680-693.
-
(2010)
Am J Bot
, vol.97
, pp. 680-693
-
-
Nakazato, T.1
Warren, D.L.2
Moyle, L.C.3
-
23
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426.
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
24
-
-
0017220894
-
Role of very slightly deleterious mutations in molecular evolution and polymorphism
-
Ohta T (1976). Role of very slightly deleterious mutations in molecular evolution and polymorphism. Theor Pop Biol 10: 254-275.
-
(1976)
Theor Pop Biol
, vol.10
, pp. 254-275
-
-
Ohta, T.1
-
25
-
-
77954696772
-
Nucleotide diversity and linkage disequilibrium in balsam poplar
-
Olson MS, Robertson AL, Takebayashi N, Silim S, Schroeder WR, Tiffin P (2010). Nucleotide diversity and linkage disequilibrium in balsam poplar (Populus balsamifera). New Phytol 186: 526-536.
-
(2010)
(Populus Balsamifera). New Phytol
, vol.186
, pp. 526-536
-
-
Olson, M.S.1
Robertson, A.L.2
Takebayashi, N.3
Silim, S.4
Schroeder, W.R.5
Tiffin, P.6
-
26
-
-
0344132058
-
Deleterious mutations can reduce differentiation in small, subdivided populations
-
Pamilo P, Palsson S, Savolainen O (1999). Deleterious mutations can reduce differentiation in small, subdivided populations. Hereditas 130: 257-264.
-
(1999)
Hereditas
, vol.130
, pp. 257-264
-
-
Pamilo, P.1
Palsson, S.2
Savolainen, O.3
-
27
-
-
47249152680
-
The taxonomy of tomatoes: A revision of wild tomatoes (solanum section eycopersicon) and their outgroup relatives in sections juglan-difolium and
-
Peralta IE, Spooner DM, Knapp S (2008). The taxonomy of tomatoes: a revision of wild tomatoes (Solanum section Eycopersicon) and their outgroup relatives in sections Juglan-difolium and Lycopersicoides. Syst Bot Monogr 84: 1-186.
-
(2008)
Lycopersicoides. Syst Bot Monogr
, vol.84
, pp. 1-186
-
-
Peralta, I.E.1
Spooner, D.M.2
Knapp, S.3
-
28
-
-
41149101864
-
Shallow-soil endemics: Adaptive advantages and constraints of a specialized root-system morphology
-
Poot P, Lambers H (2008). Shallow-soil endemics: adaptive advantages and constraints of a specialized root-system morphology. New Phytol 178: 371-381.
-
(2008)
New Phytol
, vol.178
, pp. 371-381
-
-
Poot, P.1
Lambers, H.2
-
29
-
-
84976268606
-
-
R Foundation for Statistical Computing (ed.): Vienna, Austria
-
R Development Core Team (2005). R: a Language and Environment for Statistical Computing. R Foundation for Statistical Computing (ed.): Vienna, Austria.
-
(2005)
R: A Language and Environment for Statistical Computing
-
-
-
30
-
-
31544473725
-
The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species
-
Roselius K, Stephan W, Stadler T (2005). The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species. Genetics 171: 753-763.
-
(2005)
Genetics
, vol.171
, pp. 753-763
-
-
Roselius, K.1
Stephan, W.2
Stadler, T.3
-
31
-
-
77954966377
-
Genome-wide evidence for efficient positive and purifying selection in capsella grandiflora, a plant species with a large effective population size
-
Slotte T, Foxe JP, Hazzouri KM, Wright SI (2010). Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size. Mol Biol Evol 27: 1813-1821.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1813-1821
-
-
Slotte, T.1
Foxe, J.P.2
Hazzouri, K.M.3
Wright, S.I.4
-
32
-
-
40849103000
-
Population genetics of speciation in two closely related wild tomatoes (Section
-
Städler T, Arunyawat U, Stephan W (2008). Population genetics of speciation in two closely related wild tomatoes (section Lycopersicon). Genetics 178: 339-350.
-
(2008)
Lycopersicon
, vol.178
, pp. 339-350
-
-
Städler, T.1
Arunyawat, U.2
Stephan, W.3
-
33
-
-
67849119548
-
The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations
-
Städler T, Haubold B, Merino C, Stephan W, Pfaffelhuber P (2009). The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics 182: 205-216.
-
(2009)
Genetics
, vol.182
, pp. 205-216
-
-
Städler, T.1
Haubold, B.2
Merino, C.3
Stephan, W.4
Pfaffelhuber, P.5
-
34
-
-
21044445192
-
Genealogical footprints of speciation processes in wild tomatoes: Demography and evidence for historical gene flow
-
Städler T, Roselius K, Stephan W (2005). Genealogical footprints of speciation processes in wild tomatoes: demography and evidence for historical gene flow. Evolution 59: 1268-1279.
-
(2005)
Evolution
, vol.59
, pp. 1268-1279
-
-
Städler, T.1
Roselius, K.2
Stephan, W.3
-
35
-
-
0031760997
-
Dna polymorphism in lycopersicon and crossing-over per physical length
-
Stephan W, Langley CH (1998). DNA polymorphism in Lycopersicon and crossing-over per physical length. Genetics 150: 1585-1593.
-
(1998)
Genetics
, vol.150
, pp. 1585-1593
-
-
Stephan, W.1
Langley, C.H.2
-
36
-
-
0036065328
-
Metapopulation structure favors plasticity over local adaptation
-
Sultan SE, Spencer HG (2002). Metapopulation structure favors plasticity over local adaptation. Am Nat 160: 271-283.
-
(2002)
Am Nat
, vol.160
, pp. 271-283
-
-
Sultan, S.E.1
Spencer, H.G.2
-
37
-
-
0024313579
-
Statistical-method for testing the neutral mutation hypothesis by dna polymorphism
-
Tajima F (1989). Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
38
-
-
0026482438
-
High-density molecular linkage maps of the tomato and potato genomes
-
Tanksley SD, Ganal MW, Prince JP, de Vicente MC, Bonierbale MW, Broun P et al. (1992). High-density molecular linkage maps of the tomato and potato genomes. Genetics 132: 1141-1160.
-
(1992)
Genetics
, vol.132
, pp. 1141-1160
-
-
Tanksley, S.D.1
Ganal, M.W.2
Prince, J.P.3
De Vicente, M.C.4
Bonierbale, M.W.5
Broun, P.6
-
40
-
-
0038124402
-
Fixation probability and time in subdivided populations
-
Whitlock MC (2003). Fixation probability and time in subdivided populations. Genetics 164: 767-779.
-
(2003)
Genetics
, vol.164
, pp. 767-779
-
-
Whitlock, M.C.1
-
41
-
-
58549090139
-
The impact of natural selection on the genome: Emerging patterns in drosophila and
-
Wright SI, Andolfatto P (2008). The impact of natural selection on the genome: emerging patterns in Drosophila and Arabidopsis. Annu Rev Ecol Evol Syst 39: 193-213.
-
(2008)
Arabidopsis. Annu Rev Ecol Evol Syst
, vol.39
, pp. 193-213
-
-
Wright, S.I.1
Olfatto, P.2
-
42
-
-
77957230324
-
Nucleotide diversity patterns of local adaptation at drought-related candidate genes in wild tomatoes
-
Xia H, Camus-Kulandaivelu L, Stephan W, Tellier A, Zhang Z (2010). Nucleotide diversity patterns of local adaptation at drought-related candidate genes in wild tomatoes. Mol Ecol 19: 4144-4154.
-
(2010)
Mol Ecol
, vol.19
, pp. 4144-4154
-
-
Xia, H.1
Camus-Kulandaivelu, L.2
Stephan, W.3
Tellier, A.4
Zhang, Z.5
-
43
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang ZH, Nielsen R (2000). Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol 17: 32-43.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 32-43
-
-
Yang, Z.H.1
Nielsen, R.2
|