Phylogeny of the Caryophyllales sensu lato: Revisiting hypotheses on pollination biology and perianth differentiation in the core Caryophyllales

International Journal of Plant Sciences

Volumn 170, Issue 5, 2009, Pages 627-643

  Brockington, Samuel F ^a,b   Alexandre, Roolse ^b   Ramdial, Jeremy ^b   Moore, Michael J ^c   Crawley, Sunny ^d   Dhingra, Amit ^e   Hilu, Khidir ^d   Soltis, Douglas E ^a   Soltisy, Pamela S ^b  

^a UNIVERSITY OF FLORIDA   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

^c OBERLIN COLLEGE   (United States)

^d VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^e WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

Character reconstruction; Evo devo; Mads box; Petals; Stochastic character mapping

Indexed keywords

ANCESTRY; BIOLOGICAL DEVELOPMENT; CLADISTICS; DICOTYLEDON; EVOLUTION; PARSIMONY ANALYSIS; PHYLOGENY; PLASTID; POLLINATION;

BASELLACEAE; CACTACEAE; CARYOPHYLLALES; DIDIEREACEAE; GISEKIA; HALOPHYTUM; LIMEUM; NYCTAGINACEAE; PHYTOLACCACEAE; PORTULACA; PORTULACACEAE; RHABDODENDRON; RIVINA; SARCOBATUS; SIMMONDSIA; STEGNOSPERMA; TALINUM;

EID: 70349169872     PISSN: 10585893     EISSN: None     Source Type: Journal    
DOI: 10.1086/597785     Document Type: Article

References (88)

1. Albert VA, SE Williams, MW Chase 1992 Carnivorous plants: phylogeny and structural evolution. Science 257:1491-1495.
2. APG (Angiosperm Phylogeny Group) II 2003 An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG II. Bot J Linn Soc 141:399-436.
3. Applequist WL, RS Wallace 2001 Phylogeny of the portulacaceous cohort based on ndhF sequence data. Syst Bot 26:406-419.
4. Behnke HD 1994 Sieve element plastids: their significance for the evolution and systematics of the order. Pages 87-121 in HD Behnke, TJ Mabry, eds. Caryophyllales: evolution and systematics. Springer, Berlin.
5. -. 1997 Sarcobataceae: a new family of Caryophyllales. Taxon 46:495-507.
6. Bessey CE 1915 The phylogenetic taxonomy of flowering plants. Ann Mo Bot Gard 2:108-164.
7. Birkinshaw C, R Edmond, C Hong-Wa, C Rajeriarison, F Randriantafika, G Schatz 2004 Red lists for Malagasy plants. II. Asteropeiaceae. Missouri Botanical Garden, St. Louis. Bittrich V 1993 Halophytaceae. Pages 320-321 in K Kubitzki, JG Rohwer, V Bittrich, eds. The families and genera of flowering plants. Vol 2. Springer, Berlin.
8. Blackwell WH, MJ Powell 1981 A preliminary note on pollination in the Chenopodiaceae. Ann Mo Bot Gard 68:524-526.
9. Bollback JP 2006 SIMMAP: stochastic character mapping of discrete traits on phylogenies. BMC Bioinformatics 7:88.
10. Bowman JL, DR Smyth, EM Meyerowitz 1989 Genes directing flower development in Arabidopsis. Plant Cell 1:37-52.
11. Braun A 1864 Uebersicht der Natü rlichen Systems nach der Anordnung Derselben. Pages 22-67 in PAscherson, ed. Flora der Provinz Brandenburg, der Altmark und des Herzogthums Magdeburg. Hirschwald, Berlin.
12. Brockington SF, M Frohlich, PJ Rudall, DE Soltis, PS Soltis 2007 Differing patterns of MADS-box gene expression associated with shifts in petaloidy within Aizoaceae (Caryophyllales). Page 191 in Program and abstract book. Plant Biology and Botany Congress, Chicago.
13. Brockington SF, E Mavrodiev, J Ramdial, A Dhingra, PS Soltis, DE Soltis 2008 Keep the DNA rolling: multiple displacement amplification of archival plant DNA extracts. Taxon 53:944-948.
14. Buxbaum F 1950-1955 Morphology of cacti. Abbey Garden, Pasadena, CA.
15. Carolin R 1987 A review of the family Portulacaceae. Aust J Bot 35: 383-412.
16. Clement JS, TJ Mabry 1996 Pigment evolution in the Caryophyllales: a systematic overview. Bot Acta 109:360-367.
17. Couvreur TLP 2008 Revealing the secrets of African Annonaceae: systematics, evolution and biogeography of the syncarpous genera Isolona and Monodora. PhD thesis. Wageningen University.
18. Couvreur TLP, JE Richardson, MSM Sosef, RHJ Erkens, LW Chatrou 2008 Evolution of syncarpy and other morphological characters in African Annonaceae: a posterior mapping approach. Mol Phylogenet Evol 42:302-318.
19. Cronquist A 1981 An integrated system of classification of flowering plants. Columbia University Press, New York.
20. -. 1988 The evolution and classification of flowering plants. New York Botanical Garden, Bronx.
21. Cronquist A, RF Thorne 1994 Nomenclatural and taxonomic history. Pages 87-12 in HD Behnke, TJ Mabry, eds. Caryophyllales: evolution and systematics. Springer, Berlin.
22. Cuénoud P, V Savolainen, LW Chatrou, M Powell, RJ Grayer, MW Chase 2002 Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. Am J Bot 89:132-144.
23. Dahlgren R 1975 A system of classification of the angiosperms to be used to demonstrate the distribution of characters. Bot Not 128: 119-147.
24. Dhingra A, KM Folta 2005 ASAP: amplification, sequencing and annotation of plastomes. BMC Genomics 6:176.
25. Douglas NA, PS Manos 2007 Molecular phylogeny of Nyctaginaceae: taxonomy, biogeography, and characters associated with a radiation of xerophytic genera in North America. Am J Bot 94:856-872.
26. Downie SR, DS Katz-Downie, KJ Cho 1997 Relationships in the Caryophyllales as suggested by phylogenetic analyses of partial chloroplast DNA ORF2280 homolog sequences. Am J Bot 84:253-273.
27. Downie SR, JD Palmer 1994 A chloroplast DNA phylogeny of the Caryophyllales based on structural and inverted repeat restriction site variation. Syst Bot 19:487.
28. Doyle J, J Doyle 1987 Genomic plant DNA preparation from fresh tissue-CTAB method. Phytochem Bull 19:11.
29. Ehrendorfer F 1976 Closing remarks: systematics and evolution of centrospermous families. Plant Syst Evol 126:99-106.
30. Eichler A 1875-1878 Blü thendiagramme. 1, 2. Engelmann, Leipzig. Endress PK 1994 Diversity and evolutionary biology of tropical flowers. Cambridge University Press, Cambridge.
31. -. 2002 Morphology and angiosperm systematics in the molecular era. Bot Rev 68:545-570.
32. Fay MF, KM Cameron, GT Prance, MD Lledo, MW Chase 1997 Familial relationships of Rhabdodendron (Rhabdodendraceae) plastid rbcL sequences indicate a caryophyllid placement. Kew Bull 52:923-932.
33. Felsenstein J 1978 Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 27:401-410.
34. -. 1985 Confidence-limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
35. Fior S, PO Karis, G Casazza, L Minuto, F Sala 2006 Molecular phylogeny of the Caryophyllaceae (Caryophyllales) inferred from chloroplast matK and nuclear rDNA ITS sequences. Am J Bot 93: 399-411.
36. Friedman J, SCH Barrett 2008 A phylogenetic analysis of the evolution of wind pollination in the angiosperms. Int J Plant Sci 169:49-58.
37. Giannasi DE, G Zurawski, G Learn, MT Clegg 1992 Evolutionary relationships of the Caryophyllidae based on comparative rbcL sequences. Syst Bot 17:1-15.
38. Hershkovitz MA 1993 Revised circumscriptions and subgeneric taxonomies of Calandrinia and Montiopsis (Portulacaceae) with notes on Phylogeny of the portulacaceous Alliance. Ann Mo Bot Gard 80: 333-365.
39. Hershkovitz MA, EA Zimmer 1997 On the evolutionary origins of the cacti. Taxon 46:217-232.
40. Hilu KW, T Borsch, K Muller, DE Soltis, PS Soltis, V Savolainen, MW Chase, et al 2003 Angiosperm phylogeny based on matK sequence information. Am J Bot 90:1758-1776.
41. Hofmann U 1973 Morphologische Untersushungen zur Umgrenzung und Gliederung der Aizoaceen. Bot Jahrb Syst 93:247-324.
42. -. 1994 Flower morphology and ontogeny. Pages 123-166 in HD Behnke, TJ Mabry, eds. Caryophyllales: evolution and systematics. Springer, Berlin.
43. Huelsenbeck JP, R Nielsen, JP Bollback 2003 Stochastic mapping of the morphological characters. Syst Biol 52:131-158.
44. Huelsenbeck JP, F Ronquist 2001 MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
45. Hunziker JH, R Pozner, A Escobar 2000 Chromosome number in Halophytum ameghinoi (Halophytaceae). Plant Syst Evol 221:125-127.
46. Irish VF, EM Kramer 1998 Genetic and molecular analysis of angiosperm flower development. Adv Bot Res 28:197-230.
47. Jansen RK, C Kaittanis, C Saski, SB Lee, J Tomkins, AJ Alverson, H Daniell 2006 Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids. BMC Evol Biol 6:32.
48. Jaramillo MA, EM Kramer 2007 The role of developmental geneticsin understanding homology and morphological evolution in plants. Int J Plant Sci 168:61-72.
49. Judd WS, CS Campbell, EA Kellogg, PF Stevens 1999 Plant systematics: a phylogenetic approach. Sinauer, Sunderland, MA.
50. Kramer EM, VF Irish 1999 Evolution of genetic mechanisms controlling petal development. Nature 399:144-148.
51. Kubitzki K, C Bayer, eds 2003 The families and genera of vascular plants. Vol 5. Springer, Berlin.
52. -. 2007 The families and genera of vascular plants. Vol 9. Springer, Berlin.
53. Kubitzki K, JG Rohwer, V Bittrich, eds 1993 The families and genera of vascular plants. Vol 2. Springer, Berlin.
54. Kuhn U 1993 Chenopodiaceae. Pages 253-280 in K Kubitzki, J Rohwer, V Bittrich, eds. The families and genera of vascular plants. Vol 2. Springer, Berlin.
55. Maddison W, D Maddison 2008 Mesquite: a modular system for evolutionary analysis, version 2.5. http://mesquiteproject.org. Milby TH 1980 Studies in the floral anatomy of Claytonia (Portulacaceae). Am J Bot 67:1046-1050.
56. Moore MJ, CD Bell, PS Soltis, DE Soltis 2007 Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc Natl Acad Sci USA 104:19363-19368.
57. Morton CM, KG Karol, MW Chase 1997 Taxonomic affinities of Physena (Physenaceae) and Asteropeia (Theaceae). Bot Rev 63:231-239.
58. Nelson B, GT Prance 1984 Observations on the pollination of Rhabdodendron macrophyllum (Spruce ex Benth.) Huber. Acta Amazon 14:411-426.
59. Nyffeler R 2007 The closest relatives of cacti: insights from phylogenetic analyses of chloroplast and mitochondrial sequences with special emphasis on relationships in the tribe Anacampseroteae. Am J Bot 94:89-101.
60. Nylander J 2004 MrModeltest, version 2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala. Prance GT 2003 Rhabdodendraceae. Pages 339-341 in K Kubitzki, C Bayer, eds. The families and genera of vascular plants. Vol 5. Springer, Berlin.
61. Rambaut A, A Drummond 2003 Tracer, version 1. http://tree.bio .ed.ac.uk/software/tracer
62. Renner SS, L Beenken, GW Grimm, A Kocyan, RE Ricklefs 2007 The evolution of dioecy, heterodichogamy, and labile sex expression in Acer. Evolution 61:2701-2719.
63. Rettig JH, HD Wilson, JR Manhart 1992 Phylogeny of the Caryophyllales: gene sequence data. Taxon 41:201-209.
64. Rohweder O 1967 Centrospermenstudien. 3. Blü tenntwicklü ng und Blü tenblau bei Silenoideen (Caryophyllaceae). Bot Jahrb Syst 86: 130-185.
65. Rohweder O, K Huber 1974 Centropsermenstudien. 7. Beobachtungen und Anmerkungen zur Morpholgie und Entwicklungsgeschichte einiger Nyctaginaceae. Bot Jahrb Syst 90:447-468.
66. Ronquist F, JP Huelsenbeck 2003 MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
67. Ronse De Craene LP 2007 Are petals sterile stamens or bracts? The origin and evolution of petals in the core eudicots. Ann Bot 100: 621-630.
68. -. 2008 Homology and evolution of petals in the core eudicots. Syst Bot 33:301-325.
69. Ronse De Craene LP, EF Smets, P Vanvinckenroye 1998 Pseudodiplostemony and its implications for the evolution of the androecium in the Caryophyllaceae. J Plant Res 111:25-43. (Pubitemid 128176886)
70. Savolainen V, MW Chase, SB Hoot, CM Morton, DE Soltis, C Bayer, MF Fay, AY De Bruijn, S Sullivan, YL Qiu 2000 Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences. Syst Biol 49:306-362.
71. Schmitz-Linneweber C, RM Maier, JP Alcaraz, A Cottet, RG Herrmann, R Mache 2001 The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization. Plant Mol Biol 45:307-315.
72. Sharma HP 1954 Studies in the order Centrospermales. I. Vascular anatomy of certain species of Portulacaceae. J Indian Bot Soc 33: 98-111.
73. -. 1963 Contributions to the morphology of the Nyctaginaceae. 2. Floral anatomy of some species. Proc Indian Acad Sci 57:149-163.
74. Soltis DE, PS Soltis, MW Chase, ME Mort, DC Albach, M Zanis, V Savolainen, et al 2000 Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences. Bot J Linn Soc 133:381-461.
75. Soltis PS, DE Soltis, MW Chase 1999 Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 402:402-404.
76. Sommer H, W Nacken, P Beltran, P Huijser, H Pape, R Hansen, P Flor, H Saedler, Z Schwarzsommer 1991 Properties of deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus. Development 113:169-175.
77. Swofford D 2000 PAUP* phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer, Sunderland, MA.
78. Takhtajan A 1980 Outline of the classification of flowering plants (Magnoliophyta). Bot Rev 46:225-359.
79. -. 1991 Evolutionary trends in flowering plants. Columbia University Press, New York.
80. Thompson JD, TJ Gibson, F Plewniak, F Jeanmougin, DG Higgins 1997 The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.
81. Thorne R 1976 A phylogenetic classification of the Angiospermae. Evol Biol 9:35-106.
82. -. 1992 An updated classification of the flowering plants. Aliso 13:365-389.
83. Vanvinckenroye P, E Cresens, LP Ronse De Craene, E Smets 1993 A comparative floral developmental study in Pisonia, Bougainvillea and Mirabilis (Nyctaginaceae) with special emphasis on the gynoecium and floral nectaries. Bull Jard Bot Natl Belg 62:69-96.
84. Wikstrom N, V Savolainen, MW Chase 2001 Evolution of the angiosperms: calibrating the family tree. Proc R Soc B 268:2211-2220.
85. Williams SE, VA Albert, MW Chase 1994 Relationships of Droseraceae: a cladistic analysis of rbcL sequence and morphological data. Am J Bot 81:1027-1037.
86. Wyman SK, RK Jansen, JL Boore 2004 Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252-3255.
87. Zachgo S, ED Silva, P Motte, W Trobner, H Saedler, Z Schwarzsommer 1995 Functional-analysis of the Antirrhinum floral homeotic deficiens gene in-vivo and in-vitro by using a temperature-sensitive mutant. Development 121:2861-2875.
88. Zwickl D 2000 Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD diss. University of Texas, Austin.