SCOPUS 정보 검색 플랫폼

Methods

Volumn 55, Issue 4, 2011, Pages 350-362

A helical processing pipeline for EM structure determination of membrane proteins

(6) Fisher, Lauren S a Ward, Andrew a Milligan, Ronald A a Unwin, Nigel a,b Potter, Clinton S a Carragher, Bridget a

a SCRIPPS RESEARCH INSTITUTE (United States)

b MRC LABORATORY OF MOLECULAR BIOLOGY (United Kingdom)

Author keywords

Appion; Electron microscopy; Helical processing; Membrane protein; Phoelix

Indexed keywords

ANTIINFECTIVE AGENT; CRYSTALLIN; INTEGRAL MEMBRANE PROTEIN; MEMBRANE PROTEIN; UNCLASSIFIED DRUG;

AMPLITUDE MODULATION; ANALYTIC METHOD; APPION SOFTWARE; ARTICLE; AUTOMATION; CELL SURFACE; CELL VACUOLE; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DATA ANALYSIS SOFTWARE; DATA BASE; FOURIER ANALYSIS; FOURIER BESSEL HELICAL ANALYSIS; NONHUMAN; PHOENIX SOFTWARE; PIPELINE; POWER SPECTRUM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PROCESSING; PROTEIN STRUCTURE; PROTEIN SYNTHESIS; TRANSMISSION ELECTRON MICROSCOPY;

EID: 84855984666 PISSN: 10462023 EISSN: 10959130 Source Type: Journal
DOI: 10.1016/j.ymeth.2011.09.013 Document Type: Review

Times cited : (4)

References (63)

1
- 53249115170
- Fujiyoshi Y., Unwin N. Curr. Opin. Struct. Biol. 2008, 18:587-592.
- (2008) Curr. Opin. Struct. Biol. , vol.18 , pp. 587-592
- Fujiyoshi, Y.¹ Unwin, N.²

2
- 67650282016
- Raunser S., Walz T. Annu. Rev. Biophys. 2009, 38:89-105.
- (2009) Annu. Rev. Biophys. , vol.38 , pp. 89-105
- Raunser, S.¹ Walz, T.²

3
- 0028131217
- Kuhlbrandt W., Gennis R.B. Curr. Opin. Struct. Biol. 1994, 4:517-518.
- (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 517-518
- Kuhlbrandt, W.¹ Gennis, R.B.²

4
- 0034609808
- Murata K., Mitsuoka K., Hirai T., Walz T., Agre P., Heymann J.B., Engel A., Fujiyoshi Y. Nature 2000, 407:599-605.
- (2000) Nature , vol.407 , pp. 599-605
- Murata, K.¹ Mitsuoka, K.² Hirai, T.³ Walz, T.⁴ Agre, P.⁵ Heymann, J.B.⁶ Engel, A.⁷ Fujiyoshi, Y.⁸

5
- 0037043724
- Breyton C., Haase W., Rapoport T.A., Kuhlbrandt W., Collinson I. Nature 2002, 418:662-665.
- (2002) Nature , vol.418 , pp. 662-665
- Breyton, C.¹ Haase, W.² Rapoport, T.A.³ Kuhlbrandt, W.⁴ Collinson, I.⁵

6
- 28444450878
- Gonen T., Cheng Y.F., Sliz P., Hiroaki Y., Fujiyoshi Y., Harrison S.C., Walz T. Nature 2005, 438:633-638.
- (2005) Nature , vol.438 , pp. 633-638
- Gonen, T.¹ Cheng, Y.F.² Sliz, P.³ Hiroaki, Y.⁴ Fujiyoshi, Y.⁵ Harrison, S.C.⁶ Walz, T.⁷

7
- 33745938162
- Holm P.J., Bhakat P., Jegerschold C., Gyobu N., Mitsuoka K., Fujiyoshi Y., Morgenstern R., Hebert H. J. Mol. Biol. 2006, 360:934-945.
- (2006) J. Mol. Biol. , vol.360 , pp. 934-945
- Holm, P.J.¹ Bhakat, P.² Jegerschold, C.³ Gyobu, N.⁴ Mitsuoka, K.⁵ Fujiyoshi, Y.⁶ Morgenstern, R.⁷ Hebert, H.⁸

8
- 34547224262
- Oshima A., Tani K., Hiroaki Y., Fujiyoshi Y., Sosinsky G.E. Proc. Natl. Acad. Sci. USA 2007, 104:10034-10039.
- (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 10034-10039
- Oshima, A.¹ Tani, K.² Hiroaki, Y.³ Fujiyoshi, Y.⁴ Sosinsky, G.E.⁵

9
- 0038112088
- Miyazawa A., Fujiyoshi Y., Unwin N. Nature 2003, 423:949-955.
- (2003) Nature , vol.423 , pp. 949-955
- Miyazawa, A.¹ Fujiyoshi, Y.² Unwin, N.³

10
- 13444271681
- Unwin N. J. Mol. Biol. 2005, 346:967-989.
- (2005) J. Mol. Biol. , vol.346 , pp. 967-989
- Unwin, N.¹

11
- 0036304564
- Unwin N., Miyazawa A., Li J., Fujiyoshi Y. J. Mol. Biol. 2002, 319:1165-1176.
- (2002) J. Mol. Biol. , vol.319 , pp. 1165-1176
- Unwin, N.¹ Miyazawa, A.² Li, J.³ Fujiyoshi, Y.⁴

12
- 20544441912
- Kukulski W., Schenk A.D., Johanson U., Braun T., de Groot B.L., Fotiadis D., Kjellbom P., Engel A. J. Mol. Biol. 2005, 350:611-616.
- (2005) J. Mol. Biol. , vol.350 , pp. 611-616
- Kukulski, W.¹ Schenk, A.D.² Johanson, U.³ Braun, T.⁴ de Groot, B.L.⁵ Fotiadis, D.⁶ Kjellbom, P.⁷ Engel, A.⁸

13
- 34347236451
- Leschziner A.E., Nogales E. Annu. Rev. Biophys. Biomol. Struct. 2007, 36:43-62.
- (2007) Annu. Rev. Biophys. Biomol. Struct. , vol.36 , pp. 43-62
- Leschziner, A.E.¹ Nogales, E.²

14
- 41949099222
- Zhou Z.H. Curr. Opin. Struct. Biol. 2008, 18:218-228.
- (2008) Curr. Opin. Struct. Biol. , vol.18 , pp. 218-228
- Zhou, Z.H.¹

15
- 39849102970
- Jiang W., Baker M.L., Jakana J., Weigele P.R., King J., Chiu W. Nature 2008, 451:1130-1134.
- (2008) Nature , vol.451 , pp. 1130-1134
- Jiang, W.¹ Baker, M.L.² Jakana, J.³ Weigele, P.R.⁴ King, J.⁵ Chiu, W.⁶

16
- 43749092377
- Yu X., Jin L., Zhou Z.H. Nature 2008, 453:415-419.
- (2008) Nature , vol.453 , pp. 415-419
- Yu, X.¹ Jin, L.² Zhou, Z.H.³

17
- 41149086034
- Zhang X., Settembre E., Xu C., Dormitzer P.R., Bellamy R., Harrison S.C., Grigorieff N. Proc. Natl. Acad. Sci. USA 2008, 105:1867-1872.
- (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 1867-1872
- Zhang, X.¹ Settembre, E.² Xu, C.³ Dormitzer, P.R.⁴ Bellamy, R.⁵ Harrison, S.C.⁶ Grigorieff, N.⁷

18
- 79953108462
- Grigorieff N., Harrison S.C. Curr. Opin. Struct. Biol. 2011, 21:265-273.
- (2011) Curr. Opin. Struct. Biol. , vol.21 , pp. 265-273
- Grigorieff, N.¹ Harrison, S.C.²

19
- 77951912692
- Zhang X., Jin L., Fang Q., Hui W.H., Zhou Z.H. Cell 2010, 141:472-482.
- (2010) Cell , vol.141 , pp. 472-482
- Zhang, X.¹ Jin, L.² Fang, Q.³ Hui, W.H.⁴ Zhou, Z.H.⁵

20
- 77956098333
- Liu H., Jin L., Koh S.B., Atanasov I., Schein S., Wu L., Zhou Z.H. Science 2010, 329:1038-1043.
- (2010) Science , vol.329 , pp. 1038-1043
- Liu, H.¹ Jin, L.² Koh, S.B.³ Atanasov, I.⁴ Schein, S.⁵ Wu, L.⁶ Zhou, Z.H.⁷

21
- 79955032171
- Zhou Z.H. Adv. Protein Chem. Struct. Biol. 2011, 82:1-35.
- (2011) Adv. Protein Chem. Struct. Biol. , vol.82 , pp. 1-35
- Zhou, Z.H.¹

22
- 33644838451
- Grob P., Cruse M.J., Inouye C., Peris M., Penczek P.A., Tjian R., Nogales E. Structure 2006, 14:511-520.
- (2006) Structure , vol.14 , pp. 511-520
- Grob, P.¹ Cruse, M.J.² Inouye, C.³ Peris, M.⁴ Penczek, P.A.⁵ Tjian, R.⁶ Nogales, E.⁷

23
- 35148891312
- Scheres S.H., Nunez-Ramirez R., Gomez-Llorente Y., San Martin C., Eggermont P.P., Carazo J.M. Structure 2007, 15:1167-1177.
- (2007) Structure , vol.15 , pp. 1167-1177
- Scheres, S.H.¹ Nunez-Ramirez, R.² Gomez-Llorente, Y.³ San Martin, C.⁴ Eggermont, P.P.⁵ Carazo, J.M.⁶

24
- 0038670209
- Golas M.M., Sander B., Will C.L., Luhrmann R., Stark H. Science 2003, 300:980-984.
- (2003) Science , vol.300 , pp. 980-984
- Golas, M.M.¹ Sander, B.² Will, C.L.³ Luhrmann, R.⁴ Stark, H.⁵

25
- 60349110387
- Luhrmann R., Stark H. Curr. Opin. Struct. Biol. 2009, 19:96-102.
- (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 96-102
- Luhrmann, R.¹ Stark, H.²

26
- 79959347866
- Ge P., Zhou Z.H. Proc. Natl. Acad. Sci. USA 2011, 108:9637-9642.
- (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 9637-9642
- Ge, P.¹ Zhou, Z.H.²

27
- 23444433903
- Ludtke S.J., Serysheva I.I., Hamilton S.L., Chiu W. Structure 2005, 13:1203-1211.
- (2005) Structure , vol.13 , pp. 1203-1211
- Ludtke, S.J.¹ Serysheva, I.I.² Hamilton, S.L.³ Chiu, W.⁴

28
- 33947180023
- Rubinstein J.L. Methods 2007, 41:409-416.
- (2007) Methods , vol.41 , pp. 409-416
- Rubinstein, J.L.¹

29
- 51349143018
- Glaeser R.M. J. Struct. Biol. 2008, 163:271-276.
- (2008) J. Struct. Biol. , vol.163 , pp. 271-276
- Glaeser, R.M.¹

30
- 0029311258
- Whittaker M., Carragher B.O., Milligan R.A. Ultramicroscopy 1995, 58:245-259.
- (1995) Ultramicroscopy , vol.58 , pp. 245-259
- Whittaker, M.¹ Carragher, B.O.² Milligan, R.A.³

31
- 0343157661
- Carragher B., Whittaker M., Milligan R.A. J. Struct. Biol. 1996, 116:107-112.
- (1996) J. Struct. Biol. , vol.116 , pp. 107-112
- Carragher, B.¹ Whittaker, M.² Milligan, R.A.³

32
- 45549102308
- Stagg S.M., Lander G.C., Quispe J., Voss N.R., Cheng A., Bradlow H., Bradlow S., Carragher B., Potter C.S. J. Struct. Biol. 2008, 163:29-39.
- (2008) J. Struct. Biol. , vol.163 , pp. 29-39
- Stagg, S.M.¹ Lander, G.C.² Quispe, J.³ Voss, N.R.⁴ Cheng, A.⁵ Bradlow, H.⁶ Bradlow, S.⁷ Carragher, B.⁸ Potter, C.S.⁹

33
- 60649103238
- Lander G.C., Stagg S.M., Voss N.R., Cheng A., Fellmann D., Pulokas J., Yoshioka C., Irving C., Mulder A., Lau P.W., Lyumkis D., Potter C.S., Carragher B. J. Struct. Biol. 2009, 166:95-102.
- (2009) J. Struct. Biol. , vol.166 , pp. 95-102
- Lander, G.C.¹ Stagg, S.M.² Voss, N.R.³ Cheng, A.⁴ Fellmann, D.⁵ Pulokas, J.⁶ Yoshioka, C.⁷ Irving, C.⁸ Mulder, A.⁹ Lau, P.W.¹⁰ Lyumkis, D.¹¹ Potter, C.S.¹² Carragher, B.¹³

34
- 76749168960
- Voss N.R., Lyumkis D., Cheng A., Lau P.W., Mulder A., Lander G.C., Brignole E.J., Fellmann D., Irving C., Jacovetty E.L., Leung A., Pulokas J., Quispe J.D., Winkler H., Yoshioka C., Carragher B., Potter C.S. J. Struct. Biol. 2010, 169:389-398.
- (2010) J. Struct. Biol. , vol.169 , pp. 389-398
- Voss, N.R.¹ Lyumkis, D.² Cheng, A.³ Lau, P.W.⁴ Mulder, A.⁵ Lander, G.C.⁶ Brignole, E.J.⁷ Fellmann, D.⁸ Irving, C.⁹ Jacovetty, E.L.¹⁰ Leung, A.¹¹ Pulokas, J.¹² Quispe, J.D.¹³ Winkler, H.¹⁴ Yoshioka, C.¹⁵ Carragher, B.¹⁶ Potter, C.S.¹⁷

35
- 77957264753
- Lyumkis D., Moeller A., Cheng A., Herold A., Hou E., Irving C., Jacovetty E.L., Lau P.W., Mulder A.M., Pulokas J., Quispe J.D., Voss N.R., Potter C.S., Carragher B. Meth. Enzymol. 2010, 483:291-338.
- (2010) Meth. Enzymol. , vol.483 , pp. 291-338
- Lyumkis, D.¹ Moeller, A.² Cheng, A.³ Herold, A.⁴ Hou, E.⁵ Irving, C.⁶ Jacovetty, E.L.⁷ Lau, P.W.⁸ Mulder, A.M.⁹ Pulokas, J.¹⁰ Quispe, J.D.¹¹ Voss, N.R.¹² Potter, C.S.¹³ Carragher, B.¹⁴

36
- 0033166275
- Potter C.S., Chu H., Frey B., Green C., Kisseberth N., Madden T.J., Miller K.L., Nahrstedt K., Pulokas J., Reilein A., Tcheng D., Weber D., Carragher B. Ultramicroscopy 1999, 77:153-161.
- (1999) Ultramicroscopy , vol.77 , pp. 153-161
- Potter, C.S.¹ Chu, H.² Frey, B.³ Green, C.⁴ Kisseberth, N.⁵ Madden, T.J.⁶ Miller, K.L.⁷ Nahrstedt, K.⁸ Pulokas, J.⁹ Reilein, A.¹⁰ Tcheng, D.¹¹ Weber, D.¹² Carragher, B.¹³

37
- 0034517231
- Carragher B., Kisseberth N., Kriegman D., Milligan R.A., Potter C.S., Pulokas J., Reilein A. J. Struct. Biol. 2000, 132:33-45.
- (2000) J. Struct. Biol. , vol.132 , pp. 33-45
- Carragher, B.¹ Kisseberth, N.² Kriegman, D.³ Milligan, R.A.⁴ Potter, C.S.⁵ Pulokas, J.⁶ Reilein, A.⁷

38
- 20544468931
- Suloway C., Pulokas J., Fellmann D., Cheng A., Guerra F., Quispe J., Stagg S., Potter C.S., Carragher B. J. Struct. Biol. 2005, 151:41-60.
- (2005) J. Struct. Biol. , vol.151 , pp. 41-60
- Suloway, C.¹ Pulokas, J.² Fellmann, D.³ Cheng, A.⁴ Guerra, F.⁵ Quispe, J.⁶ Stagg, S.⁷ Potter, C.S.⁸ Carragher, B.⁹

39
- 33748775731
- Stagg S.M., Lander G.C., Pulokas J., Fellmann D., Cheng A., Quispe J.D., Mallick S.P., Avila R.M., Carragher B., Potter C.S. J. Struct. Biol. 2006, 155:470-481.
- (2006) J. Struct. Biol. , vol.155 , pp. 470-481
- Stagg, S.M.¹ Lander, G.C.² Pulokas, J.³ Fellmann, D.⁴ Cheng, A.⁵ Quispe, J.D.⁶ Mallick, S.P.⁷ Avila, R.M.⁸ Carragher, B.⁹ Potter, C.S.¹⁰

40
- 0029975085
- Crowther R.A., Henderson R., Smith J.M. J. Struct. Biol. 1996, 116:9-16.
- (1996) J. Struct. Biol. , vol.116 , pp. 9-16
- Crowther, R.A.¹ Henderson, R.² Smith, J.M.³

41
- 0014945041
- Moore P.B., Huxley H.E., DeRosier D.J. J. Mol. Biol. 1970, 50:279-295.
- (1970) J. Mol. Biol. , vol.50 , pp. 279-295
- Moore, P.B.¹ Huxley, H.E.² DeRosier, D.J.³

42
- 0014945329
- DeRosier D.J., Moore P.B. J. Mol. Biol. 1970, 52:355-369.
- (1970) J. Mol. Biol. , vol.52 , pp. 355-369
- DeRosier, D.J.¹ Moore, P.B.²

43
- 0029928871
- Schroeter J.P., Bretaudiere J.P. J. Struct. Biol. 1996, 116:131-137.
- (1996) J. Struct. Biol. , vol.116 , pp. 131-137
- Schroeter, J.P.¹ Bretaudiere, J.P.²

44
- 0023374114
- Milligan R.A., Flicker P.F. J. Cell Biol. 1987, 105:29-39.
- (1987) J. Cell Biol. , vol.105 , pp. 29-39
- Milligan, R.A.¹ Flicker, P.F.²

45
- 0027506299
- Unwin N. J. Mol. Biol. 1993, 229:1101-1124.
- (1993) J. Mol. Biol. , vol.229 , pp. 1101-1124
- Unwin, N.¹

46
- 0028176006
- McGough A., Way M., DeRosier D. J. Cell Biol. 1994, 126:433-443.
- (1994) J. Cell Biol. , vol.126 , pp. 433-443
- McGough, A.¹ Way, M.² DeRosier, D.³

47
- 0028115630
- Schmid M.F., Agris J.M., Jakana J., Matsudaira P., Chiu W. J. Cell Biol. 1994, 124:341-350.
- (1994) J. Cell Biol. , vol.124 , pp. 341-350
- Schmid, M.F.¹ Agris, J.M.² Jakana, J.³ Matsudaira, P.⁴ Chiu, W.⁵

48
- 0029042213
- Morgan D.G., Owen C., Melanson L.A., DeRosier D.J. J. Mol. Biol. 1995, 249:88-110.
- (1995) J. Mol. Biol. , vol.249 , pp. 88-110
- Morgan, D.G.¹ Owen, C.² Melanson, L.A.³ DeRosier, D.J.⁴

49
- 20144378098
- Mallick S.P., Carragher B., Potter C.S., Kriegman D.J. Ultramicroscopy 2005, 104:8-29.
- (2005) Ultramicroscopy , vol.104 , pp. 8-29
- Mallick, S.P.¹ Carragher, B.² Potter, C.S.³ Kriegman, D.J.⁴

50
- 0038441501
- Mindell J.A., Grigorieff N. J. Struct. Biol. 2003, 142:334-347.
- (2003) J. Struct. Biol. , vol.142 , pp. 334-347
- Mindell, J.A.¹ Grigorieff, N.²

51
- 77957293295
- Diaz R., Rice W.J., Stokes D.L. Meth. Enzymol. 2010, 482:131-165.
- (2010) Meth. Enzymol. , vol.482 , pp. 131-165
- Diaz, R.¹ Rice, W.J.² Stokes, D.L.³

52
- 0034034591
- Toyoshima C. Ultramicroscopy 2000, 84:1-14.
- (2000) Ultramicroscopy , vol.84 , pp. 1-14
- Toyoshima, C.¹

53
- 0344120706
- Ward A., Moody M.F., Sheehan B., Milligan R.A., Carragher B. J. Struct. Biol. 2003, 144:172-183.
- (2003) J. Struct. Biol. , vol.144 , pp. 172-183
- Ward, A.¹ Moody, M.F.² Sheehan, B.³ Milligan, R.A.⁴ Carragher, B.⁵

54
- 7244248683
- Doerrler W.T., Gibbons H.S., Raetz C.R. J. Biol. Chem. 2004, 279:45102-45109.
- (2004) J. Biol. Chem. , vol.279 , pp. 45102-45109
- Doerrler, W.T.¹ Gibbons, H.S.² Raetz, C.R.³

55
- 0035853703
- Doerrler W.T., Reedy M.C., Raetz C.R. J. Biol. Chem. 2001, 276:11461-11464.
- (2001) J. Biol. Chem. , vol.276 , pp. 11461-11464
- Doerrler, W.T.¹ Reedy, M.C.² Raetz, C.R.³

56
- 0027218689
- Gottesman M.M., Pastan I. Annu. Rev. Biochem. 1993, 62:385-427.
- (1993) Annu. Rev. Biochem. , vol.62 , pp. 385-427
- Gottesman, M.M.¹ Pastan, I.²

57
- 58849103158
- Ward A., Mulligan S., Carragher B., Chang G., Milligan R.A. J. Struct. Biol. 2009, 165:169-175.
- (2009) J. Struct. Biol. , vol.165 , pp. 169-175
- Ward, A.¹ Mulligan, S.² Carragher, B.³ Chang, G.⁴ Milligan, R.A.⁵

58
- 0036300446
- Xu C., Rice W.J., He W., Stokes D.L. J. Mol. Biol. 2002, 316:201-211.
- (2002) J. Mol. Biol. , vol.316 , pp. 201-211
- Xu, C.¹ Rice, W.J.² He, W.³ Stokes, D.L.⁴

59
- 33845305513
- Egelman E.H. J. Struct. Biol. 2007, 157:83-94.
- (2007) J. Struct. Biol. , vol.157 , pp. 83-94
- Egelman, E.H.¹

60
- 77957320447
- Egelman E.H. Meth. Enzymol. 2010, 482:167-183.
- (2010) Meth. Enzymol. , vol.482 , pp. 167-183
- Egelman, E.H.¹

61
- 33845305824
- Pomfret A.J., Rice W.J., Stokes D.L. J. Struct. Biol. 2007, 157:106-116.
- (2007) J. Struct. Biol. , vol.157 , pp. 106-116
- Pomfret, A.J.¹ Rice, W.J.² Stokes, D.L.³

62
- 46249096058
- Mears J.A., Hinshaw J.E. Methods Cell Biol. 2008, 88:237-256.
- (2008) Methods Cell Biol. , vol.88 , pp. 237-256
- Mears, J.A.¹ Hinshaw, J.E.²

63
- 47049126860
- Wang Y.A., Yu X., Ng S.Y., Jarrell K.F., Egelman E.H. J. Mol. Biol. 2008, 381:456-466.
- (2008) J. Mol. Biol. , vol.381 , pp. 456-466
- Wang, Y.A.¹ Yu, X.² Ng, S.Y.³ Jarrell, K.F.⁴ Egelman, E.H.⁵

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