The pore structure of the closed RyR1 channel

Structure

Volumn 13, Issue 8, 2005, Pages 1203-1211

  Ludtke, Steven J ^a   Serysheva, Irina I ^a   Hamilton, Susan L ^a   Chiu, Wah ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCINE; POTASSIUM CHANNEL;

ANIMAL TISSUE; ARTICLE; CRYOELECTRON MICROSCOPY; CYTOPLASM; MEMBRANE; NONHUMAN; PRIORITY JOURNAL; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; CRYOELECTRON MICROSCOPY; MOLECULAR SEQUENCE DATA; MUSCLE, SKELETAL; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RABBITS; RYANODINE RECEPTOR CALCIUM RELEASE CHANNEL; STRUCTURAL HOMOLOGY, PROTEIN;

EID: 23444433903     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2005.06.005     Document Type: Article

References (49)

1. M.L. Baker, W. Jiang, and W. Chiu Analysis of intermediate resolution structures Biophys. J. 88 2005 23
2. C.R. Booth, W. Jiang, M.L. Baker, Z. Hong Zhou, S.J. Ludtke, and W. Chiu A 9 Å single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope J. Struct. Biol. 147 2004 116 127
3. B. Böttcher, S.A. Wynne, and R.A. Crowther Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy Nature 386 1997 88 91
4. 2+ release channel J. Biol. Chem. 269 1994 15876 15884
5. G. Chang, R.H. Spencer, A.T. Lee, M.T. Barclay, and D.C. Rees Structure of the MscL homolog from Mycobacterium tuberculosis: a gated mechanosensitive ion channel Science 282 1998 2220 2226
6. W. Chiu, M.L. Baker, W. Jiang, M. Dougherty, and M.F. Schmid Electron cryomicroscopy of biological machines at subnanometer resolution Structure (Camb) 13 2005 363 372
7. A. Chu, M. Diaz-Munoz, M.J. Hawkes, K. Brush, and S.L. Hamilton Ryanodine as a probe for the functional state of the skeletal muscle sarcoplasmic reticulum calcium release channel Mol. Pharmacol. 37 1990 735 741
8. + conduction and selectivity Science 280 1998 69 77
9. (2+) release channel of skeletal muscle sarcoplasmic reticulum (ryanodine receptor isoform 1) J. Biol. Chem. 279 2004 37566 37574
10. (2+) release channel (ryanodine receptor) activity and conductance Biophys. J. 79 2000 828 840
11. T.D. Goddard, C.C. Huang, and T.E. Ferrin Software extensions to UCSF chimera for interactive visualization of large molecular assemblies Structure (Camb) 13 2005 473 482
12. R. Grunwald, and G. Meissner Lumenal sites and C terminus accessibility of the skeletal muscle calcium release channel (ryanodine receptor) J. Biol. Chem. 270 1995 11338 11347
13. S. Guis, D. Figarella-Branger, N. Monnier, D. Bendahan, G. Kozak-Ribbens, J.P. Mattei, J. Lunardi, P.J. Cozzone, and J.F. Pellissier Multiminicore disease in a family susceptible to malignant hyperthermia: histology, in vitro contracture tests, and genetic characterization Arch. Neurol. 61 2004 106 113
14. S.R. Holmberg, and A.J. Williams The cardiac sarcoplasmic reticulum calcium-release channel: modulation of ryanodine binding and single-channel activity Biochim. Biophys. Acta 1022 1990 187 193
15. W. Jiang, M.L. Baker, S.J. Ludtke, and W. Chiu Bridging the information gap: computational tools for intermediate resolution structure interpretation J. Mol. Biol. 308 2001 1033 1044
16. Y. Jiang, A. Lee, J. Chen, M. Cadene, B.T. Chait, and R. MacKinnon Crystal structure and mechanism of a calcium-gated potassium channel Nature 417 2002 515 522
17. Y. Jiang, A. Lee, J. Chen, M. Cadene, B.T. Chait, and R. MacKinnon The open pore conformation of potassium channels Nature 417 2002 523 526
18. W. Jiang, Z. Li, Z. Zhang, M.L. Baker, P.E. Prevelige, and W. Chiu Coat protein fold and maturation transition of bacteriophage P22 seen at sub-nanometer resolutions Nat. Struct. Biol. 10 2003 131 135
19. + channel Nature 423 2003 33 41
20. 2+ release channel complex of skeletal muscle sarcoplasmic reticulum. Evidence for a cooperatively coupled, negatively charged homotetramer J. Biol. Chem. 264 1989 16776 16785
21. Z. Liu, J. Zhang, R. Wang, S.R. Wayne Chen, and T. Wagenknecht Location of divergent region 2 on the three-dimensional structure of cardiac muscle ryanodine receptor/calcium release channel J. Mol. Biol. 338 2004 533 545
22. S.J. Ludtke, P.R. Baldwin, and W. Chiu EMAN: semiautomated software for high-resolution single-particle reconstructions J. Struct. Biol. 128 1999 82 97
23. S.J. Ludtke, D.H. Chen, J.L. Song, D.T. Chuang, and W. Chiu Seeing GroEL at 6 Å resolution by single particle electron cryomicroscopy Structure (Camb) 12 2004 1129 1136
24. I. Marty, M. Villaz, G. Arlaud, I. Bally, and M. Ronjat Transmembrane orientation of the N-terminal and C-terminal ends of the ryanodine receptor in the sarcoplasmic reticulum of rabbit skeletal muscle Biochem. J. 298 1994 743 749
25. 2+ release channel of sarcoplasmic reticulum J. Biol. Chem. 261 1986 6300 6306
26. 2+ release channel Mol. Cell. Biochem. 114 1992 119 123
27. A. Miyazawa, Y. Fujiyoshi, and N. Unwin Structure and gating mechanism of the acetylcholine receptor pore Nature 423 2003 949 955
28. A. Nakagawa, N. Miyazaki, J. Taka, H. Naitow, A. Ogawa, Z. Fujimoto, H. Mizuno, T. Higashi, Y. Watanabe, and T. Omura The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins Structure (Camb) 11 2003 1227 1238
29. E.V. Orlova, I.I. Serysheva, M. van Heel, S.L. Hamilton, and W. Chiu Two structural configurations of the skeletal muscle calcium release channel Nat. Struct. Biol. 3 1996 547 552
30. 2+ release channel of sarcoplasmic reticulum from skeletal and cardiac muscle: evidence for a sequential mechanism in ryanodine action Mol. Pharmacol. 39 1991 679 689
31. K.A. Quane, J.M. Healy, K.E. Keating, B.M. Manning, F.J. Couch, L.M. Palmucci, C. Doriguzzi, T.H. Fagerlund, K. Berg, and H. Ording Mutations in the ryanodine receptor gene in central core disease and malignant hyperthermia Nat. Genet. 5 1993 51 55
32. M. Radermacher, V. Rao, R. Grassucci, J. Frank, A.P. Timerman, S. Fleischer, and T. Wagenknecht Cryo-electron microscopy and three-dimensional reconstruction of the calcium release channel/ryanodine receptor from skeletal muscle J. Cell Biol. 127 1994 411 423
33. 2+-release channels Cell Calcium 32 2002 307 319
34. 2+-calmodulin bind to neighboring locations on the ryanodine receptor J. Biol. Chem. 277 2002 1349 1353
35. M. Samso, T. Wagenknecht, and P.D. Allen Internal structure and visualization of transmembrane domains of the RyR1 calcium release channel by cryo-EM Nat. Struct. Mol. Biol. 12 2005 539 544
36. M.F. Schmid, M.B. Sherman, P. Matsudaira, and W. Chiu Structure of the acrosomal bundle Nature 431 2004 104 107
37. I.I. Serysheva, E.V. Orlova, W. Chiu, M.B. Sherman, S.L. Hamilton, and M. van Heel Electron cryomicroscopy and angular reconstitution used to visualize the skeletal muscle calcium release channel Nat. Struct. Biol. 2 1995 18 24
38. 2+ and AMP-PCP Biophys. J. 77 1999 1936 1944
39. 2+ release channel at 14 Å resolution J. Mol. Biol. 345 2005 427 431
40. J.S. Smith, T. Imagawa, J. Ma, M. Fill, K.P. Campbell, and R. Coronado Purified ryanodine receptor from rabbit skeletal muscle is the calcium-release channel of sarcoplasmic reticulum J. Gen. Physiol. 92 1988 1 26
41. H. Takeshima, S. Nishimura, T. Matsumoto, H. Ishida, K. Kangawa, N. Minamino, H. Matsuo, M. Ueda, M. Hanaoka, and T. Hirose Primary structure and expression from complementary DNA of skeletal muscle ryanodine receptor Nature 339 1989 439 445
42. M. van Heel Similarity measures between images Ultramicroscopy 21 1987 95 100
43. T. Wagenknecht, M. Radermacher, R. Grassucci, J. Berkowitz, H.B. Xin, and S. Fleischer Locations of calmodulin and FK506-binding protein on the three- dimensional architecture of the skeletal muscle ryanodine receptor J. Biol. Chem. 272 1997 32463 32471
44. W. Welch, S. Rheault, D.J. West, and A.J. Williams A model of the putative pore region of the cardiac ryanodine receptor channel Biophys. J. 87 2004 2335 2351
45. 2+ release channel on lipid membranes J. Struct. Biol. 149 2005 219 224
46. W.N. Zagotta, N.B. Olivier, K.D. Black, E.C. Young, R. Olson, and E. Gouaux Structural basis for modulation and agonist specificity of HCN pacemaker channels Nature 425 2003 200 205
47. M. Zhao, P. Li, X. Li, L. Zhang, R.J. Winkfein, and S.R. Chen Molecular identification of the ryanodine receptor pore-forming segment J. Biol. Chem. 274 1999 25971 25974
48. Z.H. Zhou, M.L. Baker, W. Jiang, M. Dougherty, J. Jakana, G. Dong, G. Lu, and W. Chiu Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus Nat. Struct. Biol. 8 2001 868 873
49. 2+ release channel (ryanodine receptor) of skeletal muscle sarcoplasmic reticulum J. Biol. Chem. 265 1990 2244 2256