Metabolic signatures of cancer unveiled by NMR spectroscopy of human biofluids

Progress in Nuclear Magnetic Resonance Spectroscopy

Volumn 62, Issue , 2012, Pages 51-74

  Duarte, Iola F ^a   Gil, Ana M ^a  

^a UNIVERSITY OF AVEIRO   (Portugal)

Author keywords

Biofluids; Cancer; Metabolic signature; Metabolomics; Metabonomics; Multivariate analysis; Nuclear Magnetic Resonance (NMR) spectroscopy

Indexed keywords

BODY FLUID; HUMAN; METABOLISM; METABOLOMICS; METHODOLOGY; NEOPLASM; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PUBLICATION; REVIEW; TRANSLATIONAL RESEARCH;

BODY FLUIDS; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; METABOLOMICS; NEOPLASMS; PUBLICATIONS; TRANSLATIONAL MEDICAL RESEARCH;

EID: 84855732698     PISSN: 00796565     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pnmrs.2011.11.002     Document Type: Review

References (91)

1. Nicholson, J.K., Lindon, J.C., Holmes, E., Xenobiotica, 29, 1999, 1181.
2. Fiehn, O., Plant Mol. Biol., 48, 2002, 155.
3. Vinayavekhin, N., Homan, E.A., Saghatelian, A., ACS Chem. Biol., 5, 2009, 91.
4. Madsen, R., Lundstedt, T., Trygg, J., Anal. Chim. Acta, 659, 2010, 23.
5. Nordström, A., Lewensohn, R., J. Neuroimmune Pharm., 5, 2010, 4.
6. Mamas, M., Dunn, W., Neyses, L., Goodacre, R., Arch. Toxicol., 85, 2011, 5.
7. Vizan, P., Mazurek, S., Cascante, M., Metabolomics, 4, 2008, 1.
8. Wise, D.R., DeBerardinis, R.J., Mancuso, A., Sayed, N., Zhang, X.-Y., Pfeiffer, H.K., Nissim, I., Daikhin, E., Yudkoff, M., McMahon, S.B., Thompson, C.B., Proc. Natl. Acad. Sci. USA, 105, 2008, 18782.
9. Kroemer, G., Pouyssegur, J., Cancer Cell, 13, 2008, 473.
10. Tong, X., Zhao, F., Thompson, C.B., Curr. Opin. Genet. Dev., 19, 2009, 32.
11. Griffin, J.L., Shockcor, J.P., Nat. Rev. Cancer, 4, 2004, 551.
12. Sitter, B., Bathen, T.F., Tessem, M.-B., Gribbestad, I.S., Prog. Nucl. Magn. Reson. Spectrosc., 54, 2009, 239.
13. DeFeo, E.M., Cheng, L.L., Technol. Cancer Res. Treat., 9, 2010, 381.
14. Moestue, S., Sitter, B., Bathen, T.F., Tessem, M.B., Gribbestad, I.S., Curr. Top. Med. Chem., 11, 2011, 2.
15. Erb, G., Elbayed, K., Piotto, M., Raya, J., Neuville, A., Mohr, M., Maitrot, D., Kehrli, P., Namer, I.J., Magn. Reson. Med., 59, 2008, 959.
16. Giske⊘degård, G.F., Grinde, M.T., Sitter, B., Axelson, D.E., Lundgren, S., Fj⊘sne, H.E., Dahl, S., Gribbestad, I.S., Bathen, T.F., J. Proteome Res., 9, 2010, 972.
17. Lenz, E.M., Wilson, I.D., J. Proteome Res., 6, 2007, 443.
18. Lindon, J.C., Nicholson, J.K., Annu. Rev. Anal. Chem., 1, 2008, 45.
19. Dumas, M.E., Maibaum, E.C., Teague, C., Ueshima, H., Zhou, B.F., Lindon, J.C., Nicholson, J.K., Stamler, J., Elliott, P., Chan, Q., Holmes, E., Anal. Chem., 78, 2006, 2199.
20. Zhang, S., NaganaGowda, G.A., Ye, T., Raftery, D., Analyst, 135, 2010, 1490.
21. Malet-Martino, M., Holzgrabe, U., J. Pharm. Biomed. Anal., 55, 2011, 1.
22. Wishart, D.S., Tzur, D., Knox, C., Eisner, R., Guo, A.C., Young, N., Cheng, D., Jewell, K., Arndt, D., Sawhney, S., Fung, C., Nikolai, L., Lewis, M., Coutouly, M.-A., Forsythe, I., Tang, P., Shrivastava, S., Jeroncic, K., Stothard, P., Amegbey, G., Block, D., Hau, D.D., Wagner, J., Miniaci, J., Clements, M., Gebremedhin, M., Guo, N., Zhang, Y., Duggan, G.E., MacInnis, G.D., Weljie, A.M., Dowlatabadi, R., Bamforth, F., Clive, D., Greiner, R., Li, L., Marrie, T., Sykes, B.D., Vogel, H.J., Querengesser, L., Nucleic Acids Res., 35, 2007, D521.
23. Ulrich, E.L., Akutsu, H., Doreleijers, J.F., Harano, Y., Ioannidis, Y.E., Lin, J., Livny, M., Mading, S., Maziuk, D., Miller, Z., Nakatani, E., Schulte, C.F., Tolmie, D.E., Kent Wenger, R., Yao, H., Markley, J.L., Nucleic Acids Res., 36, 2008, D402.
24. Trygg, J., Holmes, E., Lundstedt, T., J. Proteome Res., 6, 2007, 469.
25. Ebbels, T.M.D., Cavill, R., Prog. Nucl. Magn. Reson. Spectrosc., 55, 2009, 361.
26. Spratlin, J.L., Serkova, N., Eckhardt, S.G., Clin. Cancer Res., 15, 2009, 431.
27. Davis, V.W., Bathe, O.F., Schiller, D.E., Slupsky, C.M., Sawyer, M.B., J. Surg. Oncol., 103, 2011, 451.
28. Nagrath, D., Caneba, C., Karedath, T., Bellance, N., Biochim. Biophys. Acta, Bioenerg., 1807, 2011, 650.
29. Ng, D., Pasikanti, K., Chan, E., Metabolomics, 7, 2011, 155.
30. Wen, H., Yoo, S.S., Kang, J., Kim, H.G., Park, J.-S., Jeong, S., Lee, J.I., Kwon, H.N., Kang, S., Lee, D.-H., Park, S., J. Hepatol., 52, 2010, 228.
31. Cloarec, O., Dumas, M.E., Craig, A., Barton, R.H., Trygg, J., Hudson, J., Blancher, C., Gauguier, D., Lindon, J.C., Holmes, E., Nicholson, J.K., Anal. Chem., 77, 2005, 1282.
32. Srivastava, S., Roy, R., Singh, S., Kumar, P., Dalela, D., Sankhwar, S.N., Goel, A., Sonkar, A.A., Cancer Biomarkers, 6, 2010, 11.
33. Srivastava, N.K., Pradhan, S., Gowda, G.A.N., Kumar, R., NMR Biomed., 23, 2010, 113.
34. Slupsky, C.M., Steed, H., Wells, T.H., Dabbs, K., Schepansky, A., Capstick, V., Faught, W., Sawyer, M.B., Clin. Cancer Res., 16, 2010, 5835.
35. Warburg, O., Science, 123, 1956, 309.
36. Gu, H.W., Pan, Z.Z., Xi, B.W., Asiago, V., Musselman, B., Raftery, D., Anal. Chim. Acta, 686, 2011, 57.
37. Asiago, V.M., Alvarado, L.Z., Shanaiah, N., Gowda, G.A.N., Owusu-Sarfo, K., Ballas, R.A., Raftery, D., Cancer Res., 70, 2010, 8309.
38. Oakman, C., Tenori, L., Claudino, W.M., Cappadona, S., Nepi, S., Battaglia, A., Bernini, P., Zafarana, E., Saccenti, E., Fornier, M., Morris, P.G., Biganzoli, L., Luchinat, C., Bertini, I., Di Leo, A., Ann. Oncol., 22, 2011, 1295.
39. Keun, H.C., Sidhu, J., Pchejetski, D., Lewis, J.S., Marconell, H., Patterson, M., Bloom, S.R., Amber, V., Coombes, R.C., Stebbing, J., Clin. Cancer Res., 15, 2009, 6716.
40. Ludwig, C., Ward, D.G., Martin, A., Viant, M.R., Ismail, T., Johnson, P.J., Wakelam, M.J.O., Gunther, U.L., Magn. Reson. Chem., 47, 2009, S68.
41. Monleón, D., Morales, J.M., Barrasa, A., Lopez, J.A., Vazquez, C., Celda, B., NMR Biomed., 22, 2009, 342.
42. Bezabeh, T., Somorjai, R., Dolenko, B., Bryskina, N., Levin, B., Bernstein, C.N., Jeyarajah, E., Steinhart, A.H., Ruben, D.T., Smith, I.C.P., NMR Biomed., 22, 2009, 593.
43. Eisner, R., Stretch, C., Eastman, T., Xia, J.G., Hau, D., Damaraju, S., Greiner, R., Wishart, D.S., Baracos, V.E., Metabolomics, 7, 2011, 25.
44. Backshall, A., Sharma, R., Clarke, S.J., Keun, H.C., Clin. Cancer Res., 17, 2011, 3019.
45. Zhang, J.A., Liu, L.Y., Wei, S.W., Gowda, G.A.N., Hammoud, Z., Kesler, K.A., Raftery, D., J. Thorac. Cardiov. Sur., 141, 2011, 469.
46. Sullentrop, F., Moka, D., Neubauer, S., Engelmann, U., Hahn, J., Schicha, H., NMR Biomed., 15, 2002, 60.
47. Gao, H., Dong, B., Liu, X., Xuan, H., Huang, Y., Lin, D., Anal. Chim. Acta, 624, 2008, 269.
48. Zira, A.N., Theocharis, S.E., Mitropoulos, D., Migdalis, V., Mikros, E., J. Proteome Res., 9, 2010, 4038.
49. Kuliszkiewicz-Janus, M., Tuz, M.A., Baczyński, S., Biochim. Biophys. Acta, Spec. Sect. Lipids, 1737, 2005, 11.
50. MacIntyre, D.A., Jiménez, B., Lewintre, E.J., Martín, C.R., Schäfer, H., MBallesteros, C.G., Mayans, J.R., Spraul, M., García-Conde, J., Pineda-Lucena, A., Leukemia, 24, 2010, 788.
51. Gao, H.C., Lu, Q., Liu, X., Cong, H., Zhao, L.C., Wang, H.M., Lin, D.H., Cancer Sci., 100, 2009, 782.
52. Shariff, M.I.F., Ladep, N.G., Cox, I.J., Williams, H.R.T., Okeke, E., Malu, A., Thillainayagam, A.V., Crossey, M.M.E., Khan, S.A., Thomas, H.C., Taylor-Robinson, S.D., J. Proteome Res., 9, 2010, 1096.
53. Shariff, M.I., Gomaa, A.I., Cox, I.J., Patel, M., Williams, H.R., Crossey, M.M., Thillainayagam, A.V., Thomas, H.C., Waked, I., Khan, S.A., Taylor-Robinson, S.D., J. Proteome Res., 10, 2011, 1828.
54. Gowda, G.A.N., Biomarkers Med., 4, 2010, 299.
55. Jordan, K.W., Adkins, C.B., Su, L., Halpern, E.F., Mark, E.J., Christiani, D.C., Cheng, L.L., Lung Cancer, 68, 2010, 44.
56. Rocha, C.M., Carrola, J., Barros, A.S., Gil, A.M., Goodfellow, B.J., Carreira, I.M., Bernardo, J., Gomes, A., Sousa, V., Carvalho, L., Duarte, I.F., J. Proteome Res., 10, 2011, 4314.
57. Carrola, J., Rocha, C.M., Barros, A.S., Gil, A.M., Goodfellow, B.J., Carreira, I.M., Bernardo, J., Gomes, A., Sousa, V., Carvalho, L., Duarte, I.F., J. Proteome Res., 10, 2011, 221.
58. Tiziani, S., Lopes, V., Günther, U.L., Neoplasia, 11, 2009, 269.
59. Zhou, J., Xu, B., Huang, J., Jia, X., Xue, J., Shi, X., Xiao, L., Li, W., Clin. Chim. Acta, 401, 2009, 8.
60. Boss, E.A., Moolenaar, S.H., Massuger, L.F.A.G., Boonstra, H., Engelke, U.F.H., Jong, J.G.N., Wevers, R.A., NMR Biomed., 13, 2000, 297.
61. Odunsi, K., Wollman, R.M., Ambrosone, C.B., Hutson, A., McCann, S.E., Tammela, J., Geisler, J.P., Miller, G., Sellers, T., Cliby, W., Qian, F., Keitz, B., Intengan, M., Lele, S., Alderfer, J.L., Int. J. Cancer, 113, 2005, 782.
62. Garcia, E., Andrews, C., Hua, J., Kim, H.L., Sukumaran, D.K., Szyperski, T., Odunsi, K., J. Proteome Res., 10, 2011, 1765.
63. Coomans, D., Broeckaert, I., Derde, M.P., Tassin, A., Massart, D.L., Wold, S., Comput. Biomed. Res., 17, 1984, 1.
64. Beger, R.D., Schnackenberg, L.K., Holland, R.D., Li, D., Dragan, Y., Metabolomics, 2, 2006, 125.
65. Bathe, O.F., Shaykhutdinov, R., Kopciuk, K., Weljie, A.M., McKay, A., Sutherland, F.R., Dixon, E., Dunse, N., Sotiropoulos, D., Vogel, H.J., Cancer Epidem. Biomar., 20, 2011, 140.
66. Averna, T.A., Kline, E.E., Smith, A.Y., Sillerud, L.O., J. Urol., 173, 2005, 433.
67. Kline, E.E., Treat, E.G., Averna, T.A., Davis, M.S., Smith, A.Y., Sillerud, L.O., J. Urol., 176, 2006, 2274.
68. Serkova, N.J., Gamito, E.J., Jones, R.H., O'Donnell, C., Brown, J.L., Green, S., Sullivan, H., Hedlund, T., Crawford, E.D., Prostate, 68, 2008, 620.
69. Fan, Y., Murphy, T.B., Byrne, J.C., Brennan, L., Fitzpatrick, J.M., Watson, R.W., J. Proteome Res., 10, 2011, 1361.
70. Rantalainen, M., Cloarec, O., Beckonert, O., Wilson, I.D., Jackson, D., Tonge, R., Rowlinson, R., Rayner, S., Nickson, J., Wilkinson, R.W., Mills, J.D., Trygg, J., Nicholson, J.K., Holmes, E., J. Proteome Res., 5, 2006, 2642.
71. Raffelt, K., Moka, D., Sullentrop, F., Dietlein, M., Hahn, J., Schicha, H., NMR Biomed., 13, 2000, 8.
72. Lenz, E.M., Bright, J., Wilson, I.D., Hughes, A., Morrisson, J., Lindberg, H., Lockton, A., J. Pharm. Biomed. Anal., 36, 2004, 841.
73. Beckonert, O., Keun, H.C., Ebbels, T.M.D., Bundy, J., Holmes, E., Lindon, J.C., Nicholson, J.K., Nat. Protoc., 2, 2007, 2692.
74. Lauridsen, M., Hansen, S.H., Jaroszewski, J.W., Cornett, C., Anal. Chem., 79, 2007, 1181.
75. Teahan, O., Gamble, S., Holmes, E., Waxman, J., Nicholson, J.K., Bevan, C., Keun, H.C., Anal. Chem., 78, 2006, 4307.
76. Bernini, P., Bertini, I., Luchinat, C., Nincheri, P., Staderini, S., Turano, P., J. Biomol. NMR, 49, 2011, 231.
77. Webb-Robertson, B.-J.M., Lowry, D.F., Jarman, K.H., Harbo, S.J., Meng, Q.R., Fuciarelli, A.F., Pounds, J.G., Lee, K.M., J. Pharm. Biomed. Anal., 39, 2005, 830.
78. Zhang, S., Zheng, C., Lanza, I.R., Nair, K.S., Raftery, D., Vitek, O., Anal. Chem., 81, 2009, 6080.
79. De Meyer, T., Sinnaeve, D., Van Gasse, B., Rietzschel, E.-R., De Buyzere, M., Langlois, M., Bekaert, S., Martins, J., Van Criekinge, W., Anal. Bioanal. Chem., 398, 2010, 1781.
80. Goodacre, R., Broadhurst, D., Smilde, A., Kristal, B., Baker, J., Beger, R., Bessant, C., Connor, S., Capuani, G., Craig, A., Ebbels, T., Kell, D., Manetti, C., Newton, J., Paternostro, G., Somorjai, R., Sjöström, M., Trygg, J., Wulfert, F., Metabolomics, 3, 2007, 231.
81. Diamandis, E.P., J. Natl. Cancer Inst., 102, 2010, 1462.
82. Issaq, H.J., Waybright, T.J., Veenstra, T.D., Electrophoresis, 32, 2011, 967.
83. Kochhar, S., Jacobs, D.M., Ramadan, Z., Berruex, F., Fuerhoz, A., Fay, L.B., Anal. Biochem., 352, 2006, 274.
84. Psihogios, N.G., Gazi, I.F., Elisaf, M.S., Seferiadis, K.I., Bairaktari, E.T., NMR Biomed., 21, 2008, 195.
85. Freedman, D.S., Otvos, J.D., Jeyarajah, E.J., Shalaurova, I., Cupples, L.A., Parise, H., D'Agostino, R.B., Wilson, P.W., Schaefer, E.J., Clin. Chem., 50, 2004, 1189.
86. Saude, E.J., Adamko, D., Rowe, B.H., Marrie, T., Sykes, B.D., Metabolomics, 3, 2007, 439.
87. Park, Y., Kim, S.B., Wang, B., Blanco, R.A., Le, N.-A., Wu, S., Accardi, C.J., Alexander, R.W., Ziegler, T.R., Jones, D.P., Am. J. Physiol. Regul. Integr. Comp. Physiol., 297, 2009, R202.
88. Stella, C., Beckwith-Hall, B., Cloarec, O., Holmes, E., Lindon, J.C., Powell, J., van der Ouderaa, F., Bingham, S., Cross, A.J., Nicholson, J.K., J. Proteome Res., 5, 2006, 2780.
89. Peré-Trepat, E., Ross, A.B., Martin, F.-P., Rezzi, S., Kochhar, S., Hasselbalch, A.L., Kyvik, K.O., S⊘rensen, T.I.A., Chemom. Intell. Lab. Syst., 104, 2010, 95.
90. Broadhurst, D., Kell, D., Metabolomics, 2, 2006, 171.
91. Westerhuis, J., Hoefsloot, H., Smit, S., Vis, D., Smilde, A., Velzen, E., Duijnhoven, J., Dorsten, F., Metabolomics, 4, 2008, 81.