Development of chromosome 6D-specific markers for α-gliadin genes and their use in assessing dynamic changes at the Gli-2 loci

Molecular Breeding

Volumn 29, Issue 1, 2012, Pages 199-208

  Qi, Peng Fei ^a   Wei, Yu Ming ^a   Chen, Guo Yue ^a   Jiang, Qian Tao ^a   Liu, Ya Xi ^a   Li, Wei ^a   Dai, Shou Fen ^a   Zheng, You Liang ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Gli 2 loci; Point mutation; Seed storage proteins; gliadin

Indexed keywords

CLONING; PLANTS (BOTANY); POLYMERASE CHAIN REACTION;

AEGILOPS; DYNAMIC CHANGES; GLI-2 LOCUS; HEXAPLOID WHEAT; MULTI-SEQUENCES; POINT MUTATIONS; SEED STORAGE PROTEINS; SEQUENCE ALIGNMENTS; T.AESTIVUM; Α-GLIADIN;

GENES;

AEGILOPS TAUSCHII; TRITICUM AESTIVUM; TRITICUM TURGIDUM;

EID: 84855527110     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-010-9539-5     Document Type: Article

References (37)

1. Ahmadian A, Gharizadeh B, O'Meara D, Odeberg J, Lundeberg J (2001) Genotyping by apyrase-mediated allele-specific extension. Nucleic Acids Res 29: e121.
2. Anderson OD, Greene FC (1997) The α-gliadin gene family. II. DNA and protein sequence variation, subfamily structure, and origins of pseudogenes. Theor Appl Genet 95: 59-65. doi: 10. 1007/s001220050532.
3. Anderson OD, Litts JC, Greene FC (1997) The α-gliadin gene family. I. Characterization of ten new wheat α-gliadin genomic clones, evidence for limited sequence conservation of flanking DNA and southern analysis of the gene family. Theor Appl Genet 95: 50-58. doi: 10. 1007/s001220050531.
4. Caldwell KS, Dvorak J, Lagudah ES, Akhunov E, Luo MC, Wolters P, Powell W (2004) Sequence polymorphism in polyploid wheat and their D-genome diploid ancestor. Genetics 167: 941-947. doi: 10. 1534/genetics. 103. 016303.
5. Craig D, Robins G, Howdle PD (2007) Advances in celiac disease. Curr Opin Gastroenterol 23: 142-148. doi: 10. 1097/MOG. 0b013e328013ccee.
6. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure from small quantities of fresh leaf tissues. Phytochem Bull 19: 11-15.
7. Dvorak J, Luo MC, Yang ZL, Zhang HB (1998) The structure of the Aegilops tauschii genepool and the evolution of hexaploid wheat. Theor Appl Genet 97: 657-670. doi: 10. 1007/s001220050942.
8. Feldman M, Lupton FGH, Millers TE (1995) Wheats. In: Smartt J, Simmonds NW (eds) Evolution of crops. Longman, London, pp 184-192.
9. Giles RJ, Brown TA (2006) GluDy allele variations in Aegilops tauschii and Triticum aestivum: implications for the origins of hexaploid wheats. Theor Appl Genet 112: 1563-1572. doi: 10. 1007/s00122-006-0259-5.
10. Kasarda DD, Bernardin JE, Qualset CO (1976) Relationship of gliadin components to chromosomes in hexaploid wheats (Triticum aestivum L.). Proc Natl Acad Sci USA 73: 3646-3650.
11. Kashkush K, Feldman M, Levy AA (2002) Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 160: 1651-1659.
12. Kawaura K, Mochida K, Ogihara Y (2005) Expression profile of two storage-protein gene families in hexaploid wheat revealed by large-scale analysis of expressed sequence tags. Plant Physiol 139: 1870-1880. doi: 10. 1104/pp. 105. 070722.
13. Kruglyak L (1997) The use of a genetic map of biallelic markers in linkage studies. Nature Genet 17: 21-24. doi: 10. 1038/ng0997-21.
14. Kumar S, Tamura K, Nei M (2004) MEGA 3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5: 150-163. doi: 10. 1093/bib/5. 2. 150.
15. Kwok S, Kellogg DE, McKinney N, Spasic D, Goda L, Levenson C, Sninsky JJ (1990) Effects of primer-template mismatches on the polymerase chain reaction: Human immunodeficiency virus type 1 model studies. Nucleic Acids Res 18: 999-1005.
16. Liu DC, Fang H (2003) Study on the role of Chinese Ae. tauschii in the evolution of Chinese common wheat landraces. Southwest China J Agric Sci 16: 32-35. doi: 1001-4829(2003)01-0032-04.
17. Liu B, Vega JM, Feldman M (1998) Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences. Genome 41: 535-542. doi: 10. 1139/gen-41-4-535.
18. Liu DC, Lan XJ, Yang ZJ, Zheng YL, Wei YM, Zhou YH (2002) A unique Aegilops tauschii genotype needless to immature embryo culture in cross with wheat. Acta Bot Sin 44: 708-713. doi: CNKI: SUN: ZWXB. 0. 2002-06-013.
19. Long H, Wei YM, Yan ZH, Baum B, Nevo E, Zheng YL (2005) Classification of wheat low-molecular-weight glutenin subunit genes and its chromosome assignment by developing group-specific primers. Theor Appl Genet 111: 1251-1259. doi: 10. 1007/s00122-005-0024-1.
20. McFadden ES, Sears ER (1946) The origin of Triticum spelta and its free-threshing hexaploid relatives. J Hered 37(81-89): 107-116.
21. McManus R, Kelleher D (2003) Celiac disease-the villain unmasked? New Engl J Med 348: 2573-2574.
22. Miller VM, Xia H, Marrs GL, Gouvion CM, Lee G, Davidson BL, Paulson HL (2003) Allele-specific silencing of dominant disease genes. Proc Natl Acad Sci USA 100: 7195-7200. doi: 10. 1073/pnas. 1231012100.
23. Okita TW, Cheesbrough V, Reeves CD (1985) Evolution and heterogeneity of the α-/β-type and γ-type gliadin DNA sequences. J Biol Chem 260: 8203-8213.
24. Payne PI (1987) Genetics of wheat storage proteins and the effect of allelic variation on bread-making quality. Annu Rev Plant Physiol 38: 141-153. doi: 10. 1146/annurev. pp. 38. 060187. 001041.
25. Payne PI, Holt LM, Jackson EA, Law CN (1984) Wheat storage proteins: their genetics and potential for manipulation by plant breeding. Philos Trans R Soc Lond Ser B 304: 359-371. doi: 10. 1098/rstb. 1984. 0031.
26. Qi PF, Wei YM, Yue YW, Yan ZH, Zheng YL (2006a) Biochemical and molecular characterization of gliadins. Mol Biol 40: 713-723. doi: 10. 1134/S0026893306050050.
27. Qi PF, Yue YW, Wei YM, Yan ZH, Zheng YL (2006b) Molecular characterization of α-gliadin genes from wild emmer wheat (Triticum dicoccoides). DNA Seq 17: 415-421. doi: 10. 1080/10425170600931601.
28. Qi PF, Wei YM, Ouellet T, Chen Q, Tan X, Zheng YL (2009) The γ-gliadin multigene family in common wheat (Triticum aestivum) and its closely related species. BMC Genomics 10: 168. doi: 10. 1186/1471-2164-10-168.
29. Rungis D, Hamberger B, Bérubé Y, Wilkin J, Bohlmann J, Ritland K (2005) Efficient genetic mapping of single nucleotide polymorphisms based upon DNA mismatch digestion. Mol Breed 16: 261-270. doi: 10. 1007/s11032-005-3424-7.
30. Shan L, Molberg ø, Parrot I, Hausch F, Filiz F, Gray GM, Sollid LM, Khosla C (2002) Structural basis for gluten intolerance in celiac disease. Science 297: 2275-2279.
31. Shewry PR, Tatham AS (1990) The prolamin storage proteins of cereal seeds: structure and evolution. Biochem J 267: 1-12.
32. Shewry PR, Tatham AS, Lazzeri P (1997) Biotechnology of wheat quality. J Sci Food Agric 73: 397-406. doi: 10. 1002/(SICI)1097-0010(199704)73: 4& 397: AID-JSFA758 3. 0. CO; 2-Q.
33. van Herpen TWJM, Goryunova SV, van der Schoot J, Mitreva M, Salentijn E, Vorst O, Schenk MF, van Veelen PA, Koning F, van Soest LJM, Vosman B, Bosch D, Hamer RJ, Gilissen LMWJ, Smulders MJM (2006) Alpha-gliadin genes from the A, B and D genomes of wheat contain different sets of celiac disease epitopes. BMC Genomics 7: 1. doi: 10. 1186/1471-2164-7-1.
34. Wieser H (2000) Comparative investigations of gluten proteins from different wheat species. I. Qualitative and quantitative composition of gluten protein types. Eur Food Res Technol 211: 262-268. doi: 10. 1007/s002170000165.
35. Wieser H, Springer G, Belitz HD (1982) Toxicity of different wheat gliadins in coeliac disease. Z Lebensm Forsch 175: 321-326.
36. Yen C, Yang JL (1999) The biosystematics study on the Triticeae tribe. I. Triticum-Aegilops complex. China Agricultural Press, Beijing.
37. Zhang LQ, Liu DC, Yan ZH, Lan XJ, Zheng YL, Zhou YH (2004) Rapid changes of microsatellite flanking sequence in the allopolyploidization of new synthesized hexaploid wheat. Sci China Ser C 47: 553-561. doi: 10. 1360/03yc0177.