The γ-gliadin multigene family in common wheat (Triticum aestivum) and its closely related species

BMC Genomics

Volumn 10, Issue , 2009, Pages

  Qi, Peng Fei ^a   Wei, Yu Ming ^a   Ouellet, Thérèse ^b   Chen, Qing ^a   Tan, Xin ^a   Zheng, You Liang ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

^b AGRICULTURE AND AGRI FOOD CANADA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE; ESSENTIAL AMINO ACID; GLIADIN; PLANT DNA;

AMINO ACID COMPOSITION; AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; GENE ISOLATION; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC HETEROGENEITY; GENETIC POLYMORPHISM; GENETIC VARIABILITY; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SPECIES COMPARISON; SPECIES DIVERSITY; WHEAT; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE REPEAT; PLANT GENE;

AEGILOPS; TRITICUM AESTIVUM;

AMINO ACID SEQUENCE; DNA, PLANT; EPITOPES; EVOLUTION, MOLECULAR; GENES, PLANT; GLIADIN; LINKAGE DISEQUILIBRIUM; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; POLYMORPHISM, GENETIC; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TRITICUM;

EID: 66149117475     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-168     Document Type: Article

References (50)

1. Shewry PR Tatham AS Lazzeri P Biotechnology of wheat quality J Sci Food Agric 1997, 73:397-406. 10.1002/ (SICI)1097-0010(199704)73:4<397::AID-JSFA758>3.0.CO;2-Q
2. Payne PI Genetics of wheat storage proteins and the effect of allelic variation on bread-making quality Annu Rev Plant Physiol 1987, 38:141-153. 10.1146/annurev.pp.38.060187.001041
3. Qi PF Wei YM Yue YW Yan ZH Zheng YL Biochemical and molecular characterization of gliadins Mol Biol 2006, 40:713-723. 10.1134/ S0026893306050050
4. Bietz JA Huebner FR Sanderson JE Wall JS Wheat gliadin homology revealed through N-terminal amino acid sequence analysis Cereal Chem 1977, 54:1070-1083.
5. Payne PI Law CN Mudd EE Control by homoeologous group 1 chromosomes of the high-molecular-weight subunits of glutenin, a major protein of wheat endosperm Theor Appl Genet 1980, 58:113-120. 10.1007/BF00263101
6. Payne PI Holt LM Jackson EA Law CN Wheat storage proteins: Their genetics and potential for manipulation by plant breeding Philos Trans R Soc London Ser B 1984, 304:359-371. 10.1098/rstb.1984.0031
7. Payne PI Jackson EA Holt LM Law CN Genetic linkage between endosperm storage protein genes on each of the short arms of chromosomes 1A and 1B in wheat Theor Appl Genet 1984, 67:235-243. 10.1007/BF00317044
8. Tatham AS Shewry PR The S-poor prolamins of wheat, barley and rye J Cereal Sci 1995, 22:1-16. 10.1016/S0733-5210(05)80002-5
9. Shewry PR Halford NG Cereal seed storage proteins: Structures, properties and role in grain utilization J Exp Bot 2002, 53:947-958. 10.1093/jexbot/53.370.947 11912237
10. Sabelli P Shewry PR Characterization and organization of gene families at the Gli-1 loci of bread and durum wheats by restriction fragment analysis Theor Appl Genet 1991, 83:209-216. 10.1007/BF00226253
11. Okita TW Cheesbrough V Reeves CD Evolution and heterogeneity of the α-/β-type and γ-type gliadin DNA sequences J Biol Chem 1985, 260:8203-8213. 2989281
12. Pistón F Dorado G Martín A Barro F Cloning of nine γ-gliadin mRNAs (cDNAs) from wheat and the molecular characterization of comparative transcript levels of γ-gliadin subclasses J Cereal Sci 2006, 43:120-128. 10.1016/j.jcs.2005.07.002
13. Shan L Molberg Ø Parrot I Hausch F Filiz F Gray GM Sollid LM Khosla C Structural basis for gluten intolerance in celiac disease Science 2002, 297:2275-2279. 10.1126/science.1074129 12351792
14. McAdam SN Sollid LM Getting to grips with gluten Gut 2000, 47:743. 1728156 11076867 10.1136/gut.47.6.743
15. Koning F The molecular basis of celiac disease J Mol Recognit 2003, 16:333-336. 10.1002/jmr.641 14523946
16. Dieterich W Esslinger B Schuppan D Pathomechanisms in celiac disease Int Arch Allergy Immunol 2003, 132:98-108. 10.1159/000073710 14600421
17. Gänzle MG Loponen J Gobbetti M Proteolysis in sourdough fermentations: Mechanisms and potential for improved bread quality Trends Food Sci Tech 2008, 19:513-521. 10.1016/j.tifs.2008.04.002
18. Shewry PR Tatham AS The prolamin storage proteins of cereal seeds: structure and evolution Biochem J 1990, 267:1-12. 1131235 2183790
19. Anderson OD Hisa CC Torres V The wheat γ-gliadin genes: characterization of ten new sequences and further understanding of γ-gliadin gene family structure Theor Appl Genet 2001, 103:323-330. 10.1007/s00122-001-0551-3
20. von Büren M Lüthy J Hübner P A spelt-specific γ-glaidin gene: Discovery and detection Theor Appl Genet 2000, 100:271-279. 10.1007/s001220050036
21. Arentz-Hansen EH McAdam SN Molberg O Kristiansen C Sollid LM Production of a panel of recombinant gliadins for the characterisation of T cell reactivity in coeliac disease Gut 2000, 46:46-51. 1727782 10601054 10.1136/gut.46.1.46
22. Arentz-Hansen H McAdam SN Molberg O Fleckenstein B Lundin KE Jorgensen TJ Jung G Roepstorff P Sollid LM Celiac lesion T cells recognize epitopes that cluster in regions of gliadins rich in proline residues Gastroenterology 2002, 123:803-809. 10.1053/gast.2002.35381 12198706
23. Maruyama N Ichise K Katsube T Kishimoto T Kawase S Matsumura Y Takeuchi Y Sawada T Utsumi S Identification of major wheat allergens by means of the Escherichia coli expression system Eur J Biochem 1998, 255:739-745. 10.1046/j.1432-1327.1998.2550739.x 9738916
24. Bartels D Altosaar I Harberd NP Barker RF Thompson RD Molecular analysis of gamma-gliadin gene families at the complex Gli-1 locus of bread wheat (T. aestivum L.) Theor Appl Genet 1986, 72:845-853. 10.1007/BF00266556
25. Rafalski JA Structure of wheat gamma-gliadin genes Gene 1986, 43:221-229. 10.1016/0378-1119(86)90210-6 3017812
26. Sugiyama T Rafalski A Soell D The Nucleotide sequence of a wheat gamma-gliadin genomic clone Plant Sci 1986, 44:205-209. 10.1016/ 0168-9452(86)90092-0
27. Scheets K Hedgcoth C Nucleotide sequence of a gamma gliadin gene: Comparisons with other gamma gliadin sequences show the structure of gamma gliadin genes and the general primary structure of gamma gliadins Plant Sci 1988, 57:141-150. 10.1016/0168-9452(88)90080-5
28. D'Ovidio R Simeone M Masci S Porceddu E Kasarda DD Nucleotide sequence of a gamma-type glutenin gene from a durum wheat: Correlation with a gamma-type glutenin subunit from the same biotype Cereal Chem 1995, 72:443-449.
29. Müller SW Wieser H The location of disulphide bonds in α-type gliadins J Cereal Sci 1995, 22:21-27. 10.1016/S0733-5210(05)80004-9
30. van Herpen TWJM Goryunova SV Schoot van der J Mitreva M Salentijn E Vorst O Schenk MF van Veelen PA Koning F van Soest LJM Vosman B Bosch D Hamer RJ Gilissen LMWJ Smulders MJM Alpha-gliadin genes from the A, B and D genomes of wheatcontain different sets of celiac disease epitopes BMC Genomics 2006. http://www.biomedcentral.com/1471-2164/7/1 1368968 16403227
31. Elmorjani K Thiévin M Michon T Popineau Y Hallet JN Guéguen J Synthetic genes specifying periodic polymers modeled on the repetitive domain of wheat gliadins: Conception and expression Biochem Biophys Res Commu 1997, 239:240-246. 10.1006/bbrc.1997.7464
32. DuPont FM Vensel W Encarnacao T Chan R Kasarda DD Similarities of omega gliadins from Triticum urartu to those encoded on chromosome 1A of hexaploid wheat and evidence for their post-translational processing Theor Appl Genet 2004, 108:1299-1308. 10.1007/s00122-003-1565-9 14747918
33. Masci S Rovelli L Kasarda DD Vensel WH Lafiandra D Characterization and chromosomal localization of C-type low-molecular-weight glutenin subunits in the bread wheat cultivar Chinese Spring Theor Appl Genet 2002, 104:422-428. 10.1007/s001220100761 12582715
34. Tao HP Cornell DG Kasarda DD Surface and optical properties of wheat glutenin monolayers J Cereal Sci 1989, 10:5-18.
35. Ikeda TM Nagamine T Fukuoka H Yano H Identification of new Low molecular weight glutenin subunit genes in wheat Theor Appl Genet 2002, 104:680-687. 10.1007/s001220100756 12582674
36. Kasarda DD Bernardin JE Nimmo CC Wheat proteins in Advances in Cereal Science and Technology St. Paul, MN: American Association of Cereal Chemists Promeranz Y 1976, 1:158-236. 976867
37. Molberg Ø Uhlen AK Jensen T Flæte NS Fleckenstein B Arentz-Hansen H Raki M Lundin KEA Sollid LM Mapping of gluten T cell epitopes in the bread wheat ancestors: Implications for celiac disease Gastroenterology 2005, 128:393-401. 10.1053/j.gastro.2004.11.003 15685550
38. Spaenij-Dekking L Kooy-Winkelaar Y van Veelen P Wouter Drijfhout J Jonker H van Soest L Smulders M Bosch D Gilissen L Koning F Natural variation in toxicity of wheat: Potential for selection of nontoxic varieties for celiac disease patients Gastroenterology 2005, 129:797-806. 10.1053/j.gastro.2005.06.017 16143119
39. Doyle JJ Dolyle JL A rapid DNA isolation procedure from small quantities of fresh leaf tissues Phytochem Bull 1987, 19:11-15.
40. Thompson JD Gibson TJ Plewniak F Jeanmougin F Higgins DG The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 1997, 25:4876-4882. 147148 9396791 10.1093/nar/25.24.4876
41. Kumar S Tamura K Nei M MEGA 3: Integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 2004, 5:50-163. 10.1093/bib/5.2.150
42. Nei M Molecular Evolutionary Genetics New York, Columbia University Press 1987.
43. Kelly JK A test of neutrality based on interlocus associations Genetics 1997, 146:1197-1206. 1208047 9215920
44. Hill WG Robertson A Linkage disequilibrium in finite populations Theor Appl Genet 1968, 38:226-231. 10.1007/BF01245622
45. Hudson RR Kaplan NL Statistical properties of the number of recombination events in the history of a sample of DNA sequences Genetics 1985, 111:147-164. 1202594 4029609
46. Tajima F Statistical method for testing the neutral mutation hypothesis by DNA polymorphism Genetics 1989, 123:585-595. 1203831 2513255
47. Fu YX Li WH Statistical tests of neutrality of mutations Genetics 1993, 133:693-709. 1205353 8454210
48. Hudson RR Gene genealogies and the coalescent process Oxf Surv Evol Biol 1990, 7:1-44.
49. Press WH Teukolsky SA Vetterling WT Flannery BP Numerical recipes in C. The art of Scientific Computing Cambridge, Cambridge University Press 1992.
50. Rozas J Sanchez-Del Barrio JC Messeguer X Rozas R DnaSP, DNA polymorphism analyses by the coalescentand other methods Bioinform 2003, 19:2496-2497. 10.1093/bioinformatics/btg359