Rapid changes of microsatellite flanking sequence in the allopolyploidization of new synthesized hexaploid wheat

Science in China, Series C: Life Sciences

Volumn 47, Issue 6, 2004, Pages 553-561

  Zhang, Lianquan ^a   Liu, Dengcai ^a   Yan, Zehong ^a   Lan, Xiujin ^a   Zheng, Youliang ^a   Zhou, Yonghong ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Allopolyploidization; Genome evolution; Microsatellite; SSR; Synthesized hexaploid wheat

Indexed keywords

BIOLOGY; CHROMOSOMES; DNA SEQUENCES; GENES; SATELLITES;

ALLOPOLYPLOIDIZATIONS; FREQUENCY OF DISAPPEARANCES; GENOME EVOLUTION; MBB GENOMES; MICROSATELLITE; SYNTHESIZED HEXAPLOID WHEAT;

CULTIVATION;

CHROMOSOMES; GENES; NUCLEIC ACIDS; POLYPLOIDS; WHEAT;

AEGILOPS TAUSCHII; TRITICUM AESTIVUM;

MICROSATELLITE DNA;

ARTICLE; DNA SEQUENCE; GENETICS; GENOME; POLYPLOIDY; WHEAT;

GENOME, PLANT; MICROSATELLITE REPEATS; POLYPLOIDY; SEQUENCE ANALYSIS, DNA; TRITICUM;

EID: 19744377865     PISSN: 10069305     EISSN: None     Source Type: Journal    
DOI: 10.1360/03yc0177     Document Type: Article

References (40)

1. Gaut, B. S., Doebley, J. F., DNA sequence evidence for the segmental allotetraploid origin of maize, Proc. Natl. Acad. Sci. USA, 1997, 94: 6809-6814.
2. Shoemaker, R. C., Polzin, K., Labate, J. et al., Genome duplication in soybean (Glycine subgenus soja), Genetics, 1996, 144: 329-338.
3. The Arabidopsis Genome Initiative, Analysis of the genome sequence of the flowering plant Arabidopsis thalian, Nature, 2000, 408: 796-815.
4. Solts, P. S., Soltis, D. E., The role of genetic and genomic attributes in the success of polyploids, Proc. Natl. Acad. Sci. USA, 2000, 97: 7051-7057.
5. Wendel, J. F., Genome evolution in polyploidy, Plant Mol. Biol., 2000, 42: 225-249.
6. Kihara, H., Discovery of DD analyser, one of the ancestors of T. vulgare, Agric. Hortic. (Tokyo), 1944, 19: 889-890.
7. McFadden, E. S., Sears, E. R., The artificial synthesis of Triticum spleta, Rec. Genet. Soc. Am., 1944, 13: 26-27.
8. Feldman, M., The origin of cultivated wheat, in The Wheat Book (ed. Bonjean, A. P., Angus, W. J.), Paris: Lavoisier Publishing, 2001, 1-56.
9. Feldman, M., Liu, B., Segal, G. et al., Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes. Genetics, 1997, 147: 1381-1387.
10. Liu, B., Vega, J. M., Segal, G. et al., Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops (I): Changes in low-copy noncoding DNA sequences, Genome, 1998, 41: 271-277.
11. Ozkan, H., Levy, A. A., Feldman, M., Allopolyploidy -induced rapid genome evolution in the wheat (Aegilops-Triticum) group, Plant Cell, 2001, 13: 1735-1747.
12. Shaked, H., Kashkush, K., Ozkan, H. et al., Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell, 2001, 13: 1749-1759.
13. Song, K., Lu, P., Tang, K. et al., Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution, Proc. Natl. Acad. Sci. USA, 1995, 92: 7719-7723.
14. Pikaard, C. S., Nucleolar dominance and silencing of transcription, Trends Plant Sci., 1999, 4: 478-483.
15. Liu, B., Brubaker, C. L., Mergeai, G. et al., Polyploid formation in cotton is not accompanied by rapid genome changes, Genome, 2001, 44: 321-330.
16. Cornai, L., Yyagi, A. P., Winter, K. et al., Phenotypical instability and rapid gene silencing in newly formed Arabidopsis allotetraploids, Plant Cell, 2000, 12: 1551-1567.
17. Lee, H. S., Chen, Z. J., Protein-coding genes are epigenetically regulated in Arabidopsis polyploids, Proc. Natl. Acad. Sci. USA, 2001, 98: 6753-6758.
18. Kashkush, K., Feldman, M., Levy, A. A., Gene loss, silencing and activation in a newly synthesized wheat allotetraploid, Genetics, 2002, 160: 1651-1659.
19. Liu, B., Vega, J. M., Feldman, M., Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops (II): Changes in low-copy coding DNA sequences, Genome, 1998, 41: 535-542.
20. Liu, B., Hu, B., Dong, Y. Z. et al., Speciation-induced heritable cytosine methylation changes in ployploid wheat. Progress in Natural Science, 2000, 10: 601-606.
21. Litt, M., Luty, J. A., A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene, Am. J. Hum. Genet., 1989, 44: 397-401.
22. Tautz, D., Trick, M., Dover, G. A., Cryptic simplicity in DNA is a major source of genetic variation, Nature, 1986, 322: 652-656.
23. Moxon, E. R., Wills, C., DNA microsatellites: Agents of evolution? Scientific American, Jan, 1999, 280(1): 72-77.
24. Weber, J. L., Wong, C., Mutation of human short tandem repeats, Hum. Mol. Genet., 1993, 2: 1123-1128.
25. Schug, M. D., Mackay, T. F., Aquadro, C. F., Low mutation rates of microsatellite loci in Drosophila melanogaster, Nature Genet., 1997, 15: 99-102.
26. Liu, D. C., Lan, X. J., Yang, Z. J. et al., A unique Aegilops tauschii genotype needless to immature embryo culture in cross with wheat, Acta Botanica Sinica, 2002, 44(6): 708-713.
27. Liu, D. C., Yen, C., Yang, J. L. et al., The chromosomal distribution of crossability genes in tetraploid wheat Triticum turgidum L. cv. Ailanmai native to Sichuan, China. Euphytica, 1999, 108: 79-82.
28. Peng, Z. S., Liu, D. C., Yen, C. et al., Crossability of tetraploid wheat landraces native to Sichuan, Shaanxi, Gansu and Xinjiang, China with rye, Genetic Resour Crop Evol., 1998, 44: 1-6.
29. Lan, X. J., Yen, C., An amphiploid derived from a Chinese landrace of tetraploid wheat, Ailanmai, crossed with Aegilops tauschii native to China and with reference to its utilization in wheat breeding, J. Sichuan Agric. Univ. (in Chinese with English abstract), 1992, 10(4): 581-585.
30. Lan, X. J., Liu, D. C., Wang, Z. R., Inheritance in synthetic hexaploid wheat 'RSP' of sprouting tolerance derived from Aegilops tauschii Cosson, Euphytica, 1997, 95: 321-323.
31. Liu, D. C., Lan, X. J., Zheng, Y. L. et al., Evaluation of Aegilops tauschii Cosson for preharvest sprouting tolerance. Genetic Resour. Crop Evol., 1998, 45: 495-498.
32. Röder, M. S., Korzun, V., Wendehake, K. et al., A microsatellite map of wheat. Genetics, 1998, 149: 2007-2023.
33. Pestsova, E., Ganal, M. W., Röder, M. S., Isolation and mapping of microsatellite markers specific for the D genome of bread wheat, Genome, 2000, 43: 689-697.
34. Liu, D. C., Yen, C., Yang, J. L., An evidence of satellite polymorphism in chromosome 5D of Aegilops tauschii Cosson. Hereditas (in Chinese with English abstract), 1997, 19: 5-7.
35. Liu, D. C., Yen, C., Yang, J. L., C-banding analysis of D-genome chromosome in Chinese landrace of Triticum tauschii (Coss.) Schmalh and Triticum aestivum L. cv, Chinese Spring. Wheat Inf Serv, 1997, 84: 33-39.
36. Guyomare'h, H., Sourdille, P., Charmet, G. et al., Characterization of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat, Theor. Appl. Genet., 2002, 104: 1164-1172.
37. Guyomare'h, H., Sourdille, P., Edwards, J. K. et al., Studies of the transferability of microsatellites derived from Triticum tauschii to hexapolid wheat and to diploid related species using amplification, hybridization and sequence comparisons, Theor. Appl. Genet., 2002, 105: 736-744.
38. Sourdille, P., Tavaud, M., Charmet, G et al., Transferability of wheat microsatellites to diploid Triticeae species carrying the A, B and D genomes, Theor. Appl. Genet., 2001, 103: 346-352.
39. Sharma, S., Balyan, H. S., Kulwai, P. L. et al., Study of interspecific SSR polymorphism among 14 species from Triticum-Aegilops group, Wheat Inf Serv, 2002, 95: 23-28.
40. Ni, Z. F., Zhang, Y. R., Liang, Y. Q. et al., Genetic diversity of D-genome revealed by SSR markers in synthesized hexaploid wheat introduced from CIMMYT, Acta Genetica Sinica (in Chinese with English abstract), 2002, 29(6): 542-548.