-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
2
-
-
79952481894
-
Accurate quantification of functional analogy among close homologs
-
Chikina MD, Troyanskaya OG, (2011) Accurate quantification of functional analogy among close homologs. PLoS Comput Biol 7: e1001074.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Chikina, M.D.1
Troyanskaya, O.G.2
-
3
-
-
33751327438
-
Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program
-
Ihmels J, Bergmann S, Berman J, Barkai N, (2005) Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program. PLoS Genet 1: e39.
-
(2005)
PLoS Genet
, vol.1
-
-
Ihmels, J.1
Bergmann, S.2
Berman, J.3
Barkai, N.4
-
4
-
-
66349116028
-
Cross species analysis of microarray expression data
-
Lu Y, Huggins P, Bar-Joseph Z, (2009) Cross species analysis of microarray expression data. Bioinformatics 25: 1476-1483.
-
(2009)
Bioinformatics
, vol.25
, pp. 1476-1483
-
-
Lu, Y.1
Huggins, P.2
Bar-Joseph, Z.3
-
5
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart JM, Segal E, Koller D, Kim SK, (2003) A gene-coexpression network for global discovery of conserved genetic modules. Science 302: 249-255.
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
6
-
-
18844374522
-
Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast
-
Tanay A, Regev A, Shamir R, (2005) Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast. Proc Natl Acad Sci U S A 102: 7203-7208.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 7203-7208
-
-
Tanay, A.1
Regev, A.2
Shamir, R.3
-
7
-
-
34548544672
-
Comparative biology: beyond sequence analysis
-
Tirosh I, Bilu Y, Barkai N, (2007) Comparative biology: beyond sequence analysis. Curr Opin Biotechnol 18: 371-377.
-
(2007)
Curr Opin Biotechnol
, vol.18
, pp. 371-377
-
-
Tirosh, I.1
Bilu, Y.2
Barkai, N.3
-
8
-
-
33645151090
-
PathSys: integrating molecular interaction graphs for systems biology
-
Baitaluk M, Qian X, Godbole S, Raval A, Ray A, et al. (2006) PathSys: integrating molecular interaction graphs for systems biology. BMC Bioinformatics 7: 55.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 55
-
-
Baitaluk, M.1
Qian, X.2
Godbole, S.3
Raval, A.4
Ray, A.5
-
9
-
-
75249086155
-
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
-
Brown KR, Otasek D, Ali M, McGuffin MJ, Xie W, et al. (2009) NAViGaTOR: Network Analysis, Visualization and Graphing Toronto. Bioinformatics 25: 3327-3329.
-
(2009)
Bioinformatics
, vol.25
, pp. 3327-3329
-
-
Brown, K.R.1
Otasek, D.2
Ali, M.3
McGuffin, M.J.4
Xie, W.5
-
10
-
-
33645471934
-
BIOZON: a system for unification, management and analysis of heterogeneous biological data
-
Birkland A, Yona G, (2006) BIOZON: a system for unification, management and analysis of heterogeneous biological data. BMC Bioinformatics 7: 70.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 70
-
-
Birkland, A.1
Yona, G.2
-
11
-
-
33644873709
-
BIOZON: a hub of heterogeneous biological data
-
Birkland A, Yona G, (2006) BIOZON: a hub of heterogeneous biological data. Nucleic Acids Res 34: D235-242.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Birkland, A.1
Yona, G.2
-
12
-
-
36349035305
-
BN++ -A Biological Information System
-
Küntzer J, Blum T, Gerasch A, Backes C, Hildebrandt A, et al. (2006) BN++-A Biological Information System. J Integr Bioinformatics 3: 34.
-
(2006)
J Integr Bioinformatics
, vol.3
, pp. 34
-
-
Küntzer, J.1
Blum, T.2
Gerasch, A.3
Backes, C.4
Hildebrandt, A.5
-
13
-
-
33745619814
-
Graph-based analysis and visualization of experimental results with ONDEX
-
Kohler J, Baumbach J, Taubert J, Specht M, Skusa A, et al. (2006) Graph-based analysis and visualization of experimental results with ONDEX. Bioinformatics 22: 1383-1390.
-
(2006)
Bioinformatics
, vol.22
, pp. 1383-1390
-
-
Kohler, J.1
Baumbach, J.2
Taubert, J.3
Specht, M.4
Skusa, A.5
-
15
-
-
77649252269
-
Visualization of omics data for systems biology
-
Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, et al. (2010) Visualization of omics data for systems biology. Nat Methods 7: S56-68.
-
(2010)
Nat Methods
, vol.7
-
-
Gehlenborg, N.1
O'Donoghue, S.I.2
Baliga, N.S.3
Goesmann, A.4
Hibbs, M.A.5
-
16
-
-
33746616867
-
Cross-species analysis of biological networks by Bayesian alignment
-
Berg J, Lassig M, (2006) Cross-species analysis of biological networks by Bayesian alignment. Proc Natl Acad Sci U S A 103: 10967-10972.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 10967-10972
-
-
Berg, J.1
Lassig, M.2
-
17
-
-
19344374050
-
Similarities and differences in genome-wide expression data of six organisms
-
Bergmann S, Ihmels J, Barkai N, (2004) Similarities and differences in genome-wide expression data of six organisms. PLoS Biol 2: E9.
-
(2004)
PLoS Biol
, vol.2
-
-
Bergmann, S.1
Ihmels, J.2
Barkai, N.3
-
18
-
-
33746067911
-
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
-
Reiss DJ, Baliga NS, Bonneau R, (2006) Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks. BMC Bioinformatics 7: 280.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 280
-
-
Reiss, D.J.1
Baliga, N.S.2
Bonneau, R.3
-
19
-
-
1542357674
-
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
-
Tanay A, Sharan R, Kupiec M, Shamir R, (2004) Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. Proc Natl Acad Sci U S A 101: 2981-2986.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 2981-2986
-
-
Tanay, A.1
Sharan, R.2
Kupiec, M.3
Shamir, R.4
-
20
-
-
77957126815
-
Multi-species integrative biclustering
-
Waltman P, Kacmarczyk T, Bate AR, Eichenberger P, Bonneau R, (2010) Multi-species integrative biclustering. Genome Biol 11: R96.
-
(2010)
Genome Biol
, vol.11
-
-
Waltman, P.1
Kacmarczyk, T.2
Bate, A.R.3
Eichenberger, P.4
Bonneau, R.5
-
21
-
-
33646743767
-
The Gaggle: an open-source software system for integrating bioinformatics software and data sources
-
Shannon PT, Reiss DJ, Bonneau R, Baliga NS, (2006) The Gaggle: an open-source software system for integrating bioinformatics software and data sources. BMC Bioinformatics 7: 176.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 176
-
-
Shannon, P.T.1
Reiss, D.J.2
Bonneau, R.3
Baliga, N.S.4
-
22
-
-
33846681447
-
Sungear: interactive visualization and functional analysis of genomic datasets
-
Poultney CS, Gutierrez RA, Katari MS, Gifford ML, Paley WB, et al. (2007) Sungear: interactive visualization and functional analysis of genomic datasets. Bioinformatics 23: 259-261.
-
(2007)
Bioinformatics
, vol.23
, pp. 259-261
-
-
Poultney, C.S.1
Gutierrez, R.A.2
Katari, M.S.3
Gifford, M.L.4
Paley, W.B.5
-
23
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, et al. (2007) Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2: 2366-2382.
-
(2007)
Nat Protoc
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
-
24
-
-
11244306358
-
Discovering statistically significant biclusters in gene expression data
-
Tanay A, Sharan R, Shamir R, (2002) Discovering statistically significant biclusters in gene expression data. Bioinformatics 18 (Suppl 1): S136-144.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Tanay, A.1
Sharan, R.2
Shamir, R.3
-
25
-
-
69849086336
-
QUBIC: a qualitative biclustering algorithm for analyses of gene expression data
-
Li G, Ma Q, Tang H, Paterson AH, Xu Y, (2009) QUBIC: a qualitative biclustering algorithm for analyses of gene expression data. Nucleic Acids Res 37: e101.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Li, G.1
Ma, Q.2
Tang, H.3
Paterson, A.H.4
Xu, Y.5
-
26
-
-
4544339167
-
Defining transcription modules using large-scale gene expression data
-
Ihmels J, Bergmann S, Barkai N, (2004) Defining transcription modules using large-scale gene expression data. Bioinformatics 20: 1993-2003.
-
(2004)
Bioinformatics
, vol.20
, pp. 1993-2003
-
-
Ihmels, J.1
Bergmann, S.2
Barkai, N.3
-
27
-
-
33646137384
-
A systematic comparison and evaluation of biclustering methods for gene expression data
-
Prelic A, Bleuler S, Zimmermann P, Wille A, Buhlmann P, et al. (2006) A systematic comparison and evaluation of biclustering methods for gene expression data. Bioinformatics 22: 1122-1129.
-
(2006)
Bioinformatics
, vol.22
, pp. 1122-1129
-
-
Prelic, A.1
Bleuler, S.2
Zimmermann, P.3
Wille, A.4
Buhlmann, P.5
-
28
-
-
34547887676
-
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
-
Huttenhower C, Flamholz AI, Landis JN, Sahi S, Myers CL, et al. (2007) Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. BMC Bioinformatics 8: 250.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 250
-
-
Huttenhower, C.1
Flamholz, A.I.2
Landis, J.N.3
Sahi, S.4
Myers, C.L.5
-
29
-
-
0242690489
-
Discovering local structure in gene expression data: the order-preserving submatrix problem
-
Ben-Dor A, Chor B, Karp R, Yakhini Z, (2003) Discovering local structure in gene expression data: the order-preserving submatrix problem. J Comput Biol 10: 373-384.
-
(2003)
J Comput Biol
, vol.10
, pp. 373-384
-
-
Ben-Dor, A.1
Chor, B.2
Karp, R.3
Yakhini, Z.4
-
31
-
-
0037399130
-
Spectral biclustering of microarray data: coclustering genes and conditions
-
Kluger Y, Basri R, Chang JT, Gerstein M, (2003) Spectral biclustering of microarray data: coclustering genes and conditions. Genome Res 13: 703-716.
-
(2003)
Genome Res
, vol.13
, pp. 703-716
-
-
Kluger, Y.1
Basri, R.2
Chang, J.T.3
Gerstein, M.4
-
32
-
-
35748941236
-
EDISA: extracting biclusters from multiple time-series of gene expression profiles
-
Supper J, Strauch M, Wanke D, Harter K, Zell A, (2007) EDISA: extracting biclusters from multiple time-series of gene expression profiles. BMC Bioinformatics 8: 334.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 334
-
-
Supper, J.1
Strauch, M.2
Wanke, D.3
Harter, K.4
Zell, A.5
-
33
-
-
34548742517
-
Identification of functional modules using network topology and high-throughput data
-
Ulitsky I, Shamir R, (2007) Identification of functional modules using network topology and high-throughput data. BMC Syst Biol 1: 8.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 8
-
-
Ulitsky, I.1
Shamir, R.2
-
34
-
-
34548527460
-
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
-
Tirosh I, Barkai N, (2007) Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biol 8: R50.
-
(2007)
Genome Biol
, vol.8
-
-
Tirosh, I.1
Barkai, N.2
-
35
-
-
35348955882
-
A universal framework for regulatory element discovery across all genomes and data types
-
Elemento O, Slonim N, Tavazoie S, (2007) A universal framework for regulatory element discovery across all genomes and data types. Mol Cell 28: 337-350.
-
(2007)
Mol Cell
, vol.28
, pp. 337-350
-
-
Elemento, O.1
Slonim, N.2
Tavazoie, S.3
-
36
-
-
37349099750
-
A predictive model for transcriptional control of physiology in a free living cell
-
Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, et al. (2007) A predictive model for transcriptional control of physiology in a free living cell. Cell 131: 1354-1365.
-
(2007)
Cell
, vol.131
, pp. 1354-1365
-
-
Bonneau, R.1
Facciotti, M.T.2
Reiss, D.J.3
Schmid, A.K.4
Pan, M.5
-
37
-
-
33847296282
-
BioNetBuilder: automatic integration of biological networks
-
Avila-Campillo I, Drew K, Lin J, Reiss DJ, Bonneau R, (2007) BioNetBuilder: automatic integration of biological networks. Bioinformatics 23: 392-393.
-
(2007)
Bioinformatics
, vol.23
, pp. 392-393
-
-
Avila-Campillo, I.1
Drew, K.2
Lin, J.3
Reiss, D.J.4
Bonneau, R.5
-
38
-
-
38349107287
-
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
-
Bare JC, Shannon PT, Schmid AK, Baliga NS, (2007) The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. BMC Bioinformatics 8: 456.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 456
-
-
Bare, J.C.1
Shannon, P.T.2
Schmid, A.K.3
Baliga, N.S.4
-
39
-
-
33747884345
-
Gene expression omnibus: microarray data storage, submission, retrieval, and analysis
-
Barrett T, Edgar R, (2006) Gene expression omnibus: microarray data storage, submission, retrieval, and analysis. Methods Enzymol 411: 352-369.
-
(2006)
Methods Enzymol
, vol.411
, pp. 352-369
-
-
Barrett, T.1
Edgar, R.2
-
40
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
41
-
-
0037246058
-
ArrayExpress-a public repository for microarray gene expression data at the EBI
-
Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, et al. (2003) ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 31: 68-71.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 68-71
-
-
Brazma, A.1
Parkinson, H.2
Sarkans, U.3
Shojatalab, M.4
Vilo, J.5
-
42
-
-
58149204055
-
ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression
-
Parkinson H, Kapushesky M, Kolesnikov N, Rustici G, Shojatalab M, et al. (2009) ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res 37: D868-872.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Parkinson, H.1
Kapushesky, M.2
Kolesnikov, N.3
Rustici, G.4
Shojatalab, M.5
-
43
-
-
58149199563
-
Implementation of GenePattern within the Stanford Microarray Database
-
Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, et al. (2009) Implementation of GenePattern within the Stanford Microarray Database. Nucleic Acids Res 37: D898-901.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hubble, J.1
Demeter, J.2
Jin, H.3
Mao, M.4
Nitzberg, M.5
-
44
-
-
0035175010
-
The Stanford Microarray Database
-
Sherlock G, Hernandez-Boussard T, Kasarskis A, Binkley G, Matese JC, et al. (2001) The Stanford Microarray Database. Nucleic Acids Res 29: 152-155.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 152-155
-
-
Sherlock, G.1
Hernandez-Boussard, T.2
Kasarskis, A.3
Binkley, G.4
Matese, J.C.5
-
45
-
-
38549134505
-
Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata
-
Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, et al. (2008) Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata. Nucleic Acids Res 36: D866-870.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Faith, J.J.1
Driscoll, M.E.2
Fusaro, V.A.3
Cosgrove, E.J.4
Hayete, B.5
-
46
-
-
0036081062
-
The KEGG databases at GenomeNet
-
Kanehisa M, Goto S, Kawashima S, Nakaya A, (2002) The KEGG databases at GenomeNet. Nucleic Acids Res 30: 42-46.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 42-46
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Nakaya, A.4
-
47
-
-
48449090922
-
RSAT: regulatory sequence analysis tools
-
Thomas-Chollier M, Sand O, Turatsinze JV, Janky R, Defrance M, et al. (2008) RSAT: regulatory sequence analysis tools. Nucleic Acids Res 36: W119-127.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Thomas-Chollier, M.1
Sand, O.2
Turatsinze, J.V.3
Janky, R.4
Defrance, M.5
-
48
-
-
0041620271
-
Regulatory sequence analysis tools
-
van Helden J, (2003) Regulatory sequence analysis tools. Nucleic Acids Res 31: 3593-3596.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3593-3596
-
-
van Helden, J.1
-
49
-
-
4644231028
-
Prolinks: a database of protein functional linkages derived from coevolution
-
Bowers PM, Pellegrini M, Thompson MJ, Fierro J, Yeates TO, et al. (2004) Prolinks: a database of protein functional linkages derived from coevolution. Genome Biol 5: R35.
-
(2004)
Genome Biol
, vol.5
-
-
Bowers, P.M.1
Pellegrini, M.2
Thompson, M.J.3
Fierro, J.4
Yeates, T.O.5
-
50
-
-
0036081482
-
Predictome: a database of putative functional links between proteins
-
Mellor JC, Yanai I, Clodfelter KH, Mintseris J, DeLisi C, (2002) Predictome: a database of putative functional links between proteins. Nucleic Acids Res 30: 306-309.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 306-309
-
-
Mellor, J.C.1
Yanai, I.2
Clodfelter, K.H.3
Mintseris, J.4
DeLisi, C.5
-
51
-
-
58149193234
-
STRING 8-a global view on proteins and their functional interactions in 630 organisms
-
Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, et al. (2009) STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res 37: D412-416.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
-
52
-
-
0034666108
-
STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
-
Snel B, Lehmann G, Bork P, Huynen MA, (2000) STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res 28: 3442-3444.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3442-3444
-
-
Snel, B.1
Lehmann, G.2
Bork, P.3
Huynen, M.A.4
-
53
-
-
75549088819
-
MicrobesOnline: an integrated portal for comparative and functional genomics
-
Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, et al. (2009) MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res pp. gkp919.
-
(2009)
Nucleic Acids Res
-
-
Dehal, P.S.1
Joachimiak, M.P.2
Price, M.N.3
Bates, J.T.4
Baumohl, J.K.5
-
54
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm M, Storm CE, Sonnhammer EL, (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol 314: 1041-1052.
-
(2001)
J Mol Biol
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
56
-
-
84855293210
-
Biosynthesis of Monomers, Nitrogen Assimilation
-
In: Stanley JT, editors, Sunderland, MA, Sinauer Associates Inc
-
Stanley JT, Gunsalus RP, Lory S, Perry JJ, (2007) Biosynthesis of Monomers, Nitrogen Assimilation. In: Stanley JT, editors. Microbial Life. Second Edition ed Sunderland, MA Sinauer Associates Inc pp. 278-282.
-
(2007)
Microbial Life
, pp. 278-282
-
-
Stanley, J.T.1
Gunsalus, R.P.2
Lory, S.3
Perry, J.J.4
-
57
-
-
0029863879
-
The homologous regulators ANR of Pseudomonas aeruginosa and FNR of Escherichia coli have overlapping but distinct specificities for anaerobically inducible promoters
-
Winteler HV, Haas D, (1996) The homologous regulators ANR of Pseudomonas aeruginosa and FNR of Escherichia coli have overlapping but distinct specificities for anaerobically inducible promoters. Microbiology 142 (Pt 3): 685-693.
-
(1996)
Microbiology
, vol.142
, Issue.Pt 3
, pp. 685-693
-
-
Winteler, H.V.1
Haas, D.2
-
58
-
-
33846107772
-
RegTransBase-a database of regulatory sequences and interactions in a wide range of prokaryotic genomes
-
Kazakov AE, Cipriano MJ, Novichkov PS, Minovitsky S, Vinogradov DV, et al. (2007) RegTransBase-a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res 35: D407-412.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kazakov, A.E.1
Cipriano, M.J.2
Novichkov, P.S.3
Minovitsky, S.4
Vinogradov, D.V.5
-
59
-
-
78651299341
-
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
-
Gama-Castro S, Salgado H, Peralta-Gil M, Santos-Zavaleta A, Muniz-Rascado L, et al. (2011) RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Res 39: D98-105.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Gama-Castro, S.1
Salgado, H.2
Peralta-Gil, M.3
Santos-Zavaleta, A.4
Muniz-Rascado, L.5
-
60
-
-
33947124948
-
FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s)
-
Fink RC, Evans MR, Porwollik S, Vazquez-Torres A, Jones-Carson J, et al. (2007) FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s). J Bacteriol 189: 2262-2273.
-
(2007)
J Bacteriol
, vol.189
, pp. 2262-2273
-
-
Fink, R.C.1
Evans, M.R.2
Porwollik, S.3
Vazquez-Torres, A.4
Jones-Carson, J.5
-
61
-
-
22244489084
-
The MicrobesOnline Web site for comparative genomics
-
Alm EJ, Huang KH, Price MN, Koche RP, Keller K, et al. (2005) The MicrobesOnline Web site for comparative genomics. Genome Res 15: 1015-1022.
-
(2005)
Genome Res
, vol.15
, pp. 1015-1022
-
-
Alm, E.J.1
Huang, K.H.2
Price, M.N.3
Koche, R.P.4
Keller, K.5
-
62
-
-
84855289727
-
MicrobesOnline Operon Predictions for Escherichia coli str
-
K-12 substr. MG1655. Available:
-
Price MN, Huang KH, Alm EJ, Arkin AP, (2005) MicrobesOnline Operon Predictions for Escherichia coli str. K-12 substr. MG1655. Available:http://www.microbesonline.org/operons/gnc511145.html.
-
(2005)
-
-
Price, M.N.1
Huang, K.H.2
Alm, E.J.3
Arkin, A.P.4
-
63
-
-
0000087813
-
Oxygen-sensitive ribonucleoside triphosphate reductase is present in anaerobic Escherichia coli
-
Fontecave M, Eliasson R, Reichard P, (1989) Oxygen-sensitive ribonucleoside triphosphate reductase is present in anaerobic Escherichia coli. Proc Natl Acad Sci U S A 86: 2147-2151.
-
(1989)
Proc Natl Acad Sci U S A
, vol.86
, pp. 2147-2151
-
-
Fontecave, M.1
Eliasson, R.2
Reichard, P.3
-
64
-
-
34247362408
-
Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology
-
Malmstrom L, Riffle M, Strauss CE, Chivian D, Davis TN, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5: e76.
-
(2007)
PLoS Biol
, vol.5
-
-
Malmstrom, L.1
Riffle, M.2
Strauss, C.E.3
Chivian, D.4
Davis, T.N.5
-
67
-
-
0033971754
-
EcoGene: a genome sequence database for Escherichia coli K-12
-
Rudd KE, (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28: 60-64.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 60-64
-
-
Rudd, K.E.1
-
68
-
-
2342526611
-
Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae
-
Kolker E, Makarova KS, Shabalina S, Picone AF, Purvine S, et al. (2004) Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. Nucleic Acids Res 32: 2353-2361.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2353-2361
-
-
Kolker, E.1
Makarova, K.S.2
Shabalina, S.3
Picone, A.F.4
Purvine, S.5
|