Implementation of GenePattern within the Stanford Microarray Database

Nucleic Acids Research

Volumn 37, Issue SUPPL. 1, 2009, Pages

  Hubble, Jeremy ^a   Demeter, Janos ^a   Jin, Heng ^a   Mao, Maria ^a   Nitzberg, Michael ^a   Reddy, T B K ^a   Wymore, Farrell ^a   Zachariah, Zachariah K ^a   Sherlock, Gavin ^a   Ball, Catherine A ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; COMPUTER PROGRAM; DATA ANALYSIS; GENETIC DATABASE; INFORMATION DISSEMINATION; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INTERNET; LICENCE; MICROARRAY ANALYSIS; PRIORITY JOURNAL;

ANIMALS; DATABASES, GENETIC; GENE EXPRESSION PROFILING; HUMANS; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SOFTWARE;

EID: 58149199563     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn786     Document Type: Article

References (6)

1. Demeter,J., Beauheim,C., Gollub,J., Hernandez-Boussard,T., Jin,H., Maier,D., Matese,J.C., Nitzberg,M., Wymore,F., Zachariah,Z.K. et al. (2007) The Stanford Microarray Database: Implementation of new analysis tools and open source release of software. Nucleic Acids Res., 35, D766-D770.
2. Brazma,A., Hingamp,P., Quackenbush,J., Sherlock,G., Spellman,P., Stoeckert,C., Aach,J., Ansorge,W., Ball,C.A., Causton,H.C. et al. (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat. Genet., 29, 365-371.
3. Spellman,P.T., Miller,M., Stewart,J., Troup,C., Sarkans,U., Chervitz,S., Bernhart,D., Sherlock,G., Ball,C., Lepage,M. et al. (2002) Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol., 3, RESEARCH0046.
4. Parkinson,H., Kapushesky,M., Shojatalab,M., Abeygunawardena,N., Coulson,R., Farne,A., Holloway,E., Kolesnykov,N., Lilja,P., Lukk,M. et al. (2007) ArrayExpress-a public database of microarray experiments and gene expression profiles. Nucleic Acids Res., 35, D747-D750.
5. Wheeler,D.L., Barrett,T., Benson,D.A., Bryant,S.H., Canese,K., Chetvernin,V., Church,D.M., DiCuccio,M., Edgar,R., Federhen,S. et al. (2007) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 35, D5-D12.
6. Kuehn,H., Liberzon,A., Reich,M. and Mesirov,J.P. (2008) Using GenePattern for gene expression analysis (Chapter 7, Unit 7.12). In Baxevanis,A.D. (ed.) Current Protocols in Bioinformatics. John Wiley & Sons, Inc., USA