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Volumn 79, Issue 2, 2012, Pages 474-486

Interannual dynamics of viriobenthos abundance and morphological diversity in Chesapeake Bay sediments

Author keywords

Aquatic; Ecology; Viral

Indexed keywords

ABUNDANCE; ANNUAL VARIATION; BACTERIUM; MARINE SEDIMENT; MICROBIAL COMMUNITY; SAMPLING; SPATIOTEMPORAL ANALYSIS; SPECIES DIVERSITY; TRANSMISSION ELECTRON MICROSCOPY; VIRUS;

EID: 84855261037     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2011.01238.x     Document Type: Article
Times cited : (15)

References (59)
  • 1
    • 33749142507 scopus 로고    scopus 로고
    • Coliforms and other microbial indicators occurrence in water and biofilm in full-scale distribution systems
    • Batte M, Feilers C, Servais P, Gauthier V, Joret JC & Block JC (2006) Coliforms and other microbial indicators occurrence in water and biofilm in full-scale distribution systems. Water Sci Technol 54: 41-48.
    • (2006) Water Sci Technol , vol.54 , pp. 41-48
    • Batte, M.1    Feilers, C.2    Servais, P.3    Gauthier, V.4    Joret, J.C.5    Block, J.C.6
  • 3
    • 48749117805 scopus 로고    scopus 로고
    • Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
    • Biddle JF, Fitz-Gibbon S, Schuster SC, Brenchley JE & House CH (2008) Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. P Natl Acad Sci USA 105: 10583-10588.
    • (2008) P Natl Acad Sci USA , vol.105 , pp. 10583-10588
    • Biddle, J.F.1    Fitz-Gibbon, S.2    Schuster, S.C.3    Brenchley, J.E.4    House, C.H.5
  • 4
    • 0342973218 scopus 로고    scopus 로고
    • Subsurface viruses and bacteria in Holocene/Late Pleistocene sediments of Saanich Inlet, BC: ODP Holes 1033B and 1034B, Leg 169S
    • Bird DF, Juniper SK, Ricciardi-Rigault M, Martineu P, Prairie YT & Calvert SE (2001) Subsurface viruses and bacteria in Holocene/Late Pleistocene sediments of Saanich Inlet, BC: ODP Holes 1033B and 1034B, Leg 169S. Mar Geol 174: 227-239.
    • (2001) Mar Geol , vol.174 , pp. 227-239
    • Bird, D.F.1    Juniper, S.K.2    Ricciardi-Rigault, M.3    Martineu, P.4    Prairie, Y.T.5    Calvert, S.E.6
  • 5
    • 0019231684 scopus 로고
    • A theory of modular evolution for bacteriophages
    • Botstein D (1980) A theory of modular evolution for bacteriophages. Ann N Y Acad Sci 354: 484-491.
    • (1980) Ann N Y Acad Sci , vol.354 , pp. 484-491
    • Botstein, D.1
  • 6
    • 67349230837 scopus 로고    scopus 로고
    • Reconciling opposing views on carbon cycling in the coastal ocean: continental shelves as sinks and near-shore ecosystems as sources of atmospheric CO2
    • Chen C-TA & Borges AV (2009) Reconciling opposing views on carbon cycling in the coastal ocean: continental shelves as sinks and near-shore ecosystems as sources of atmospheric CO2. Deep Sea Res Part 2 Top Stud Oceanogr 56: 578-590.
    • (2009) Deep Sea Res Part 2 Top Stud Oceanogr , vol.56 , pp. 578-590
    • Chen, C.-T.1    Borges, A.V.2
  • 7
    • 0035143656 scopus 로고    scopus 로고
    • Application of digital image analysis and flow cytometry to enumerate marine viruses stained with SYBR gold
    • Chen F, Lu JR, Binder BJ, Liu YC & Hodson RE (2001) Application of digital image analysis and flow cytometry to enumerate marine viruses stained with SYBR gold. Appl Environ Microbiol 67: 539-545.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 539-545
    • Chen, F.1    Lu, J.R.2    Binder, B.J.3    Liu, Y.C.4    Hodson, R.E.5
  • 8
    • 34250813023 scopus 로고    scopus 로고
    • Viral infection plays a key role in extracellular DNA dynamics in marine anoxic systems
    • Corinaldesi C, Dell'Anno A & Danovaro R (2007) Viral infection plays a key role in extracellular DNA dynamics in marine anoxic systems. Limnol Oceanogr 52: 508-516.
    • (2007) Limnol Oceanogr , vol.52 , pp. 508-516
    • Corinaldesi, C.1    Dell'Anno, A.2    Danovaro, R.3
  • 9
    • 77950668569 scopus 로고    scopus 로고
    • Viral decay and viral production rates in continental-shelf and deep-sea sediments of the Mediterranean Sea
    • Corinaldesi C, Dell'Anno A, Magagnini M & Danovaro R (2010) Viral decay and viral production rates in continental-shelf and deep-sea sediments of the Mediterranean Sea. FEMS Microbiol Ecol 72: 208-218.
    • (2010) FEMS Microbiol Ecol , vol.72 , pp. 208-218
    • Corinaldesi, C.1    Dell'Anno, A.2    Magagnini, M.3    Danovaro, R.4
  • 10
    • 0042364932 scopus 로고    scopus 로고
    • High diversity of unknown picorna-like viruses in the sea
    • Culley AI, Lang AS & Suttle CA (2003) High diversity of unknown picorna-like viruses in the sea. Nature 424: 1054-1057.
    • (2003) Nature , vol.424 , pp. 1054-1057
    • Culley, A.I.1    Lang, A.S.2    Suttle, C.A.3
  • 11
    • 0034017413 scopus 로고    scopus 로고
    • Viral density and virus-to-bacterium ratio in deep-sea sediments of the Eastern Mediterranean
    • Danovaro R & Serresi M (2000) Viral density and virus-to-bacterium ratio in deep-sea sediments of the Eastern Mediterranean. Appl Environ Microbiol 66: 1857-1861.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1857-1861
    • Danovaro, R.1    Serresi, M.2
  • 14
    • 43549111571 scopus 로고    scopus 로고
    • Viriobenthos in freshwater and marine sediments: a review
    • Danovaro R, Corinaldesi C, Filippini M et al. (2008b) Viriobenthos in freshwater and marine sediments: a review. Freshw Biol 53: 1186-1213.
    • (2008) Freshw Biol , vol.53 , pp. 1186-1213
    • Danovaro, R.1    Corinaldesi, C.2    Filippini, M.3
  • 16
    • 0002688617 scopus 로고    scopus 로고
    • Vertical profiles of virus-like particles and bacteria in the water column and sediments of Chesapeake Bay, USA
    • Drake LA, Choi K-H, Haskell AGE & Dobbs FC (1998) Vertical profiles of virus-like particles and bacteria in the water column and sediments of Chesapeake Bay, USA. Aquat Microb Ecol 16: 17-25.
    • (1998) Aquat Microb Ecol , vol.16 , pp. 17-25
    • Drake, L.A.1    Choi, K.-H.2    Haskell, A.G.E.3    Dobbs, F.C.4
  • 17
    • 33646482720 scopus 로고    scopus 로고
    • Comparison of disruption procedures for enumeration of activated sludge floc bacteria by flow cytometry
    • Falcioni T, Manti A, Boi P, Canonico B, Balsamo M & Papal S (2006) Comparison of disruption procedures for enumeration of activated sludge floc bacteria by flow cytometry. Cytometry B Clin Cytom 70B: 149-153.
    • (2006) Cytometry B Clin Cytom , vol.70 B , pp. 149-153
    • Falcioni, T.1    Manti, A.2    Boi, P.3    Canonico, B.4    Balsamo, M.5    Papal, S.6
  • 18
    • 0034644605 scopus 로고    scopus 로고
    • The global carbon cycle: a test of our knowledge of earth as a system
    • Falkowski P, Scholes R, Boyle E & Canadell J (2000) The global carbon cycle: a test of our knowledge of earth as a system. Science 290: 291-296.
    • (2000) Science , vol.290 , pp. 291-296
    • Falkowski, P.1    Scholes, R.2    Boyle, E.3    Canadell, J.4
  • 19
    • 0038221080 scopus 로고    scopus 로고
    • Seasonal patterns of viruses, bacteria and dissolved organic carbon in a riverine wetland
    • Farnell-Jackson EA & Ward AK (2003) Seasonal patterns of viruses, bacteria and dissolved organic carbon in a riverine wetland. Freshw Biol 48: 841-851.
    • (2003) Freshw Biol , vol.48 , pp. 841-851
    • Farnell-Jackson, E.A.1    Ward, A.K.2
  • 20
    • 0032486514 scopus 로고    scopus 로고
    • Optimized release of recombinant proteins by ultrasonication of E-coli cells
    • Feliu JX, Cubarsi R & Villaverde A (1998) Optimized release of recombinant proteins by ultrasonication of E-coli cells. Biotechnol Bioeng 58: 536-540.
    • (1998) Biotechnol Bioeng , vol.58 , pp. 536-540
    • Feliu, J.X.1    Cubarsi, R.2    Villaverde, A.3
  • 22
    • 0141816842 scopus 로고    scopus 로고
    • Does virus-induced lysis contribute significantly to bacterial mortality in the oxygenated sediment layer of shallow oxbow lakes?
    • Fischer UR, Wieltschnig C, Kirschner AK & Velimirov B (2003) Does virus-induced lysis contribute significantly to bacterial mortality in the oxygenated sediment layer of shallow oxbow lakes? Appl Environ Microbiol 69: 5281-5289.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5281-5289
    • Fischer, U.R.1    Wieltschnig, C.2    Kirschner, A.K.3    Velimirov, B.4
  • 23
    • 9244249222 scopus 로고    scopus 로고
    • Virus and bacteria dynamics of a coastal sediment: implication for benthic carbon cycling
    • Glud RN & Middelboe M (2004) Virus and bacteria dynamics of a coastal sediment: implication for benthic carbon cycling. Limnol Oceanogr 49: 2073-2081.
    • (2004) Limnol Oceanogr , vol.49 , pp. 2073-2081
    • Glud, R.N.1    Middelboe, M.2
  • 24
    • 4544276426 scopus 로고    scopus 로고
    • Broad diversity of viable bacteria in 'sterile' (0.2 microm) filtered water
    • Hahn MW (2004) Broad diversity of viable bacteria in 'sterile' (0.2 microm) filtered water. Res Microbiol 155: 688-691.
    • (2004) Res Microbiol , vol.155 , pp. 688-691
    • Hahn, M.W.1
  • 25
    • 64749087387 scopus 로고    scopus 로고
    • Seasonal dynamics and metagenomic characterization of estuarine viriobenthos assemblages by Randomly Amplified Polymorphic DNA PCR (RAPD-PCR)
    • Helton RR & Wommack KE (2009) Seasonal dynamics and metagenomic characterization of estuarine viriobenthos assemblages by Randomly Amplified Polymorphic DNA PCR (RAPD-PCR). Appl Environ Microbiol 75: 2259-2265.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2259-2265
    • Helton, R.R.1    Wommack, K.E.2
  • 26
    • 33746060151 scopus 로고    scopus 로고
    • Assessment of factors influencing direct enumeration of viruses within estuarine sediments
    • Helton RR, Liu L & Wommack KE (2006) Assessment of factors influencing direct enumeration of viruses within estuarine sediments. Appl Environ Microbiol 72: 4767-4774.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4767-4774
    • Helton, R.R.1    Liu, L.2    Wommack, K.E.3
  • 27
    • 0346816541 scopus 로고    scopus 로고
    • Viriobenthos production and virioplankton sorptive scavenging by suspended sediment particles in coastal and pelagic waters
    • Hewson I & Fuhrman JA (2003) Viriobenthos production and virioplankton sorptive scavenging by suspended sediment particles in coastal and pelagic waters. Microb Ecol 46: 337-347.
    • (2003) Microb Ecol , vol.46 , pp. 337-347
    • Hewson, I.1    Fuhrman, J.A.2
  • 28
    • 0035175333 scopus 로고    scopus 로고
    • Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries
    • Hewson I, O'Neil JM, Fuhrman JA & Dennison WC (2001) Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries. Limnol Oceanogr 46: 1734-1746.
    • (2001) Limnol Oceanogr , vol.46 , pp. 1734-1746
    • Hewson, I.1    O'Neil, J.M.2    Fuhrman, J.A.3    Dennison, W.C.4
  • 29
    • 84985716160 scopus 로고
    • Kinetics of protein release from yeast sonicated in batch and flow systems at 20 Khz
    • James CJ, Hughes DE & Coakley WT (1972) Kinetics of protein release from yeast sonicated in batch and flow systems at 20 Khz. Biotechnol Bioeng 14: 33-42.
    • (1972) Biotechnol Bioeng , vol.14 , pp. 33-42
    • James, C.J.1    Hughes, D.E.2    Coakley, W.T.3
  • 30
    • 0021182156 scopus 로고
    • Elution of enteric viruses from Mississippi Estuarine sediments with lecithin-supplemented eluents
    • Johnson RA, Ellender RD & Tsai SC (1984) Elution of enteric viruses from Mississippi Estuarine sediments with lecithin-supplemented eluents. Appl Environ Microbiol 48: 581-585.
    • (1984) Appl Environ Microbiol , vol.48 , pp. 581-585
    • Johnson, R.A.1    Ellender, R.D.2    Tsai, S.C.3
  • 31
    • 50049107012 scopus 로고    scopus 로고
    • Significant contribution of Archaea to extant biomass in marine subsurface sediments
    • Lipp JS, Morono Y, Inagaki F & Hinrichs K-U (2008) Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature 454: 991-994.
    • (2008) Nature , vol.454 , pp. 991-994
    • Lipp, J.S.1    Morono, Y.2    Inagaki, F.3    Hinrichs, K.-U.4
  • 32
    • 0020966097 scopus 로고
    • Adsorption of reovirus to clay-minerals - effects of cation-exchange capacity, cation saturation, and surface-area
    • Lipson SM & Stotzky G (1983) Adsorption of reovirus to clay-minerals - effects of cation-exchange capacity, cation saturation, and surface-area. Appl Environ Microbiol 46: 673-682.
    • (1983) Appl Environ Microbiol , vol.46 , pp. 673-682
    • Lipson, S.M.1    Stotzky, G.2
  • 33
    • 33746398899 scopus 로고    scopus 로고
    • Nutrient additions resulting in phage release and formation of non-nucleoid-containing bacteria
    • Lymer D & Vrede K (2006) Nutrient additions resulting in phage release and formation of non-nucleoid-containing bacteria. Aquat Microb Ecol 43: 107-112.
    • (2006) Aquat Microb Ecol , vol.43 , pp. 107-112
    • Lymer, D.1    Vrede, K.2
  • 35
    • 0028160383 scopus 로고
    • Viral and bacterial dynamics in Arctic sea ice during the spring algal bloom near Resolute, N.W.T., Canada
    • Maranger R, Bird DF & Juniper SK (1994) Viral and bacterial dynamics in Arctic sea ice during the spring algal bloom near Resolute, N.W.T., Canada. Mar Ecol Prog Ser 111: 121-127.
    • (1994) Mar Ecol Prog Ser , vol.111 , pp. 121-127
    • Maranger, R.1    Bird, D.F.2    Juniper, S.K.3
  • 36
    • 0000322618 scopus 로고
    • Clay mineralogy in relation to survival of soil bacteria
    • Marshall KC (1975) Clay mineralogy in relation to survival of soil bacteria. Annu Rev Phytopathol 13: 357-373.
    • (1975) Annu Rev Phytopathol , vol.13 , pp. 357-373
    • Marshall, K.C.1
  • 37
    • 2142839746 scopus 로고    scopus 로고
    • Virus production and life strategies in aquatic sediments
    • Mei ML & Danovaro R (2004) Virus production and life strategies in aquatic sediments. Limnol Oceanogr 49: 459-470.
    • (2004) Limnol Oceanogr , vol.49 , pp. 459-470
    • Mei, M.L.1    Danovaro, R.2
  • 38
    • 33646777447 scopus 로고    scopus 로고
    • Viral activity along a trophic gradient in continental margin sediments off central Chile
    • Middelboe M & Glud RN (2006) Viral activity along a trophic gradient in continental margin sediments off central Chile. Mar Biol Res 2: 41-51.
    • (2006) Mar Biol Res , vol.2 , pp. 41-51
    • Middelboe, M.1    Glud, R.N.2
  • 39
    • 0043073267 scopus 로고    scopus 로고
    • Distribution of viruses and bacteria in relation to diagenetic activity in an estuarine sediment
    • Middelboe M, Glud RN & Finster K (2003) Distribution of viruses and bacteria in relation to diagenetic activity in an estuarine sediment. Limnol Oceanogr 48: 1447-1456.
    • (2003) Limnol Oceanogr , vol.48 , pp. 1447-1456
    • Middelboe, M.1    Glud, R.N.2    Finster, K.3
  • 41
    • 0002850167 scopus 로고
    • Ecology of marine bacteriophages
    • Goyal SM, Gerba CP & Britton G, eds). John Wiley & Sons, New York, NY.
    • Moebus K (1987) Ecology of marine bacteriophages. Phage Ecology (Goyal SM, Gerba CP & Britton G, eds), pp. 137-155. John Wiley & Sons, New York, NY.
    • (1987) Phage Ecology , pp. 137-155
    • Moebus, K.1
  • 42
    • 0001679973 scopus 로고    scopus 로고
    • Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria
    • Noble RT & Fuhrman JA (1998) Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat Microb Ecol 14: 113-118.
    • (1998) Aquat Microb Ecol , vol.14 , pp. 113-118
    • Noble, R.T.1    Fuhrman, J.A.2
  • 43
    • 0031037938 scopus 로고    scopus 로고
    • Poliovirus-1 inactivation and interaction with biofilm: a pilot-scale study
    • Quignon F, Sardin M, Kiene L & Schwartzbrod L (1997) Poliovirus-1 inactivation and interaction with biofilm: a pilot-scale study. Appl Environ Microbiol 63: 978-982.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 978-982
    • Quignon, F.1    Sardin, M.2    Kiene, L.3    Schwartzbrod, L.4
  • 44
    • 68849086076 scopus 로고    scopus 로고
    • Low effect of viruses on bacteria in deep anoxic water and sediment of a productive freshwater reservoir
    • Ram ASP, Sabart M, Latour D & Sime-Ngando T (2009) Low effect of viruses on bacteria in deep anoxic water and sediment of a productive freshwater reservoir. Aquat Microb Ecol 55: 255-265.
    • (2009) Aquat Microb Ecol , vol.55 , pp. 255-265
    • Ram, A.S.P.1    Sabart, M.2    Latour, D.3    Sime-Ngando, T.4
  • 45
    • 0036330981 scopus 로고    scopus 로고
    • The Phage Proteomic Tree: a genome-based taxonomy for phage
    • Rohwer F & Edwards R (2002) The Phage Proteomic Tree: a genome-based taxonomy for phage. J Bacteriol 184: 4529-4535.
    • (2002) J Bacteriol , vol.184 , pp. 4529-4535
    • Rohwer, F.1    Edwards, R.2
  • 48
    • 45849123249 scopus 로고    scopus 로고
    • Viral dynamics in a coastal sediment seasonal pattern, controlling factors and relations to the pelagic-benthic coupling
    • Siem-Jorgensen M, Glud RN & Middelboe M (2008) Viral dynamics in a coastal sediment seasonal pattern, controlling factors and relations to the pelagic-benthic coupling. Mar Biol Res 4: 165-179.
    • (2008) Mar Biol Res , vol.4 , pp. 165-179
    • Siem-Jorgensen, M.1    Glud, R.N.2    Middelboe, M.3
  • 49
    • 0037052493 scopus 로고    scopus 로고
    • Prokaryotic diversity-magnitude, dynamics, and controlling factors
    • Torsvik V, Ovreas L & Thingstad TF (2002) Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296: 1064-1066.
    • (2002) Science , vol.296 , pp. 1064-1066
    • Torsvik, V.1    Ovreas, L.2    Thingstad, T.F.3
  • 50
    • 0033619964 scopus 로고    scopus 로고
    • Tidal coupling between carbohydrate concentrations and bacterial activities in diatom-inhabited intertidal mudflats
    • van Duyl FC, de Winder B, Kop AJ & Wollenzien U (1999) Tidal coupling between carbohydrate concentrations and bacterial activities in diatom-inhabited intertidal mudflats. Mar Ecol Prog Ser 191: 19-32.
    • (1999) Mar Ecol Prog Ser , vol.191 , pp. 19-32
    • van Duyl, F.C.1    de Winder, B.2    Kop, A.J.3    Wollenzien, U.4
  • 51
    • 35348869942 scopus 로고    scopus 로고
    • Quantification of the filterability of freshwater bacteria through 0.45, 0.22, and 0.1 microm pore size filters and shape-dependent enrichment of filterable bacterial communities
    • Wang Y, Hammes F, Boon N & Egli T (2007) Quantification of the filterability of freshwater bacteria through 0.45, 0.22, and 0.1 microm pore size filters and shape-dependent enrichment of filterable bacterial communities. Environ Sci Technol 41: 7080-7086.
    • (2007) Environ Sci Technol , vol.41 , pp. 7080-7086
    • Wang, Y.1    Hammes, F.2    Boon, N.3    Egli, T.4
  • 52
    • 1942486000 scopus 로고    scopus 로고
    • Ecology of prokaryotic viruses
    • Weinbauer MG (2004) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28: 127-181.
    • (2004) FEMS Microbiol Rev , vol.28 , pp. 127-181
    • Weinbauer, M.G.1
  • 54
    • 0002937947 scopus 로고
    • Ecology of soil bacteriophages
    • (Goyal SM, Gerba CP & Bitton G, eds). John Wiley & Sons, New York, NY.
    • Williams ST, Mortimer AM & Manchester L (1987) Ecology of soil bacteriophages. Phage Ecology (Goyal SM, Gerba CP & Bitton G, eds), pp. 157-179. John Wiley & Sons, New York, NY.
    • (1987) Phage Ecology , pp. 157-179
    • Williams, S.T.1    Mortimer, A.M.2    Manchester, L.3
  • 57
    • 84855286997 scopus 로고    scopus 로고
    • Bias in bacteriophage morphological classification by transmission electron microscopy due to breakage or loss of tail structures
    • doi: 10.1002/jemt.21077.
    • Williamson KE, Helton RR & Wommack KE (2011) Bias in bacteriophage morphological classification by transmission electron microscopy due to breakage or loss of tail structures. Microsc Res Tech doi: 10.1002/jemt.21077.
    • (2011) Microsc Res Tech
    • Williamson, K.E.1    Helton, R.R.2    Wommack, K.E.3
  • 58
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton: viruses in aquatic ecosystems
    • Wommack KE & Colwell RR (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 64: 69-114.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 69-114
    • Wommack, K.E.1    Colwell, R.R.2


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