메뉴 건너뛰기




Volumn 75, Issue 4, 2012, Pages 452-457

Bias in bacteriophage morphological classification by transmission electron microscopy due to breakage or loss of tail structures

Author keywords

Morphology; Phage; Sediment; Soil; TEM; Virus

Indexed keywords

EXTRACTION; HIGH RESOLUTION TRANSMISSION ELECTRON MICROSCOPY; MORPHOLOGY; SOILS; VIRUSES;

EID: 84855286997     PISSN: 1059910X     EISSN: 10970029     Source Type: Journal    
DOI: 10.1002/jemt.21077     Document Type: Article
Times cited : (11)

References (64)
  • 1
    • 0032246556 scopus 로고    scopus 로고
    • Tailed bacteriophages: The order caudovirales
    • Ackermann HW. 1998. Tailed bacteriophages: The order caudovirales. Adv Virus Res 51: 135-201.
    • (1998) Adv Virus Res , vol.51 , pp. 135-201
    • Ackermann, H.W.1
  • 2
    • 0035007418 scopus 로고    scopus 로고
    • Frequency of morphological phage descriptions in the year 2000
    • Ackermann HW. 2001. Frequency of morphological phage descriptions in the year 2000. Arch Virol 146: 843-857.
    • (2001) Arch Virol , vol.146 , pp. 843-857
    • Ackermann, H.W.1
  • 3
    • 84858859935 scopus 로고    scopus 로고
    • Declining electron microscopy
    • Abedon ST, editor. BEG News 21.
    • Ackermann HW. 2004. Declining electron microscopy. In: Abedon ST, editor. BEG News 21.
    • (2004)
    • Ackermann, H.W.1
  • 4
    • 0016341764 scopus 로고
    • The present state of phage taxonomy
    • Ackermann HW, Eisenstark A. 1974. The present state of phage taxonomy. Intervirology 3: 201-219.
    • (1974) Intervirology , vol.3 , pp. 201-219
    • Ackermann, H.W.1    Eisenstark, A.2
  • 6
    • 0033781854 scopus 로고    scopus 로고
    • Seasonal population dynamics and interactions of competing bacteriophages and their host in the rhizosphere
    • Ashelford KE, Norris SJ, Fry JC, Bailey MJ, Day MJ. 2000. Seasonal population dynamics and interactions of competing bacteriophages and their host in the rhizosphere. Appl Environ Microbiol 66: 4193-4199.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4193-4199
    • Ashelford, K.E.1    Norris, S.J.2    Fry, J.C.3    Bailey, M.J.4    Day, M.J.5
  • 7
    • 0037224865 scopus 로고    scopus 로고
    • Elevated abundance of bacteriophage infecting bacteria in soil
    • Ashelford KE, Day MJ, Fry JC. 2003. Elevated abundance of bacteriophage infecting bacteria in soil. Appl Environ Microbiol 69: 285-289.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 285-289
    • Ashelford, K.E.1    Day, M.J.2    Fry, J.C.3
  • 8
    • 33646381657 scopus 로고    scopus 로고
    • Structure of virioplankton in the Charente Estuary (France): Transmission electron microscopy versus pulsed field gel electrophoresis
    • Auguet JC, Montanie H, Lebaron P. 2006. Structure of virioplankton in the Charente Estuary (France): Transmission electron microscopy versus pulsed field gel electrophoresis. Microb Ecol 51: 197-208.
    • (2006) Microb Ecol , vol.51 , pp. 197-208
    • Auguet, J.C.1    Montanie, H.2    Lebaron, P.3
  • 9
    • 0026321830 scopus 로고
    • Bacteriophage adsorption during transport through porous-media-Chemical perturbations and reversibility
    • Bales RC, Hinkle SR, Kroeger TW, Stocking K, Gerba CP. 1991. Bacteriophage adsorption during transport through porous-media-Chemical perturbations and reversibility. Environ Sci Technol 25: 2088-2095.
    • (1991) Environ Sci Technol , vol.25 , pp. 2088-2095
    • Bales, R.C.1    Hinkle, S.R.2    Kroeger, T.W.3    Stocking, K.4    Gerba, C.P.5
  • 11
    • 0024475207 scopus 로고
    • High abundance of viruses found in aquatic environments
    • Bergh O, Borsheim KY, Bratbak G, Heldal M. 1989. High abundance of viruses found in aquatic environments. Nature 340: 467-468.
    • (1989) Nature , vol.340 , pp. 467-468
    • Bergh, O.1    Borsheim, K.Y.2    Bratbak, G.3    Heldal, M.4
  • 12
    • 0025198342 scopus 로고
    • Enumeration and biomass estimation of planktonic bacteria and viruses by transmission electron microscopy
    • Borsheim KY, Bratbak G, Heldal M. 1990. Enumeration and biomass estimation of planktonic bacteria and viruses by transmission electron microscopy. Appl Environ Microbiol 56: 352-356.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 352-356
    • Borsheim, K.Y.1    Bratbak, G.2    Heldal, M.3
  • 16
    • 14944358901 scopus 로고    scopus 로고
    • Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes
    • Cann AJ, Fandrich SE, Heaphy S. 2005. Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes. Virus Genes 30: 151-156.
    • (2005) Virus Genes , vol.30 , pp. 151-156
    • Cann, A.J.1    Fandrich, S.E.2    Heaphy, S.3
  • 17
    • 0029762609 scopus 로고    scopus 로고
    • Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes
    • Chen F, Suttle CA, Short SM. 1996. Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes. Appl Environ Microbiol 62: 2869-2874.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2869-2874
    • Chen, F.1    Suttle, C.A.2    Short, S.M.3
  • 19
    • 0035139602 scopus 로고    scopus 로고
    • Mechanisms of virus removal during transport in unsaturated porous media
    • Chu Y, Jin Y, Flury M, Yates MV. 2001. Mechanisms of virus removal during transport in unsaturated porous media. Water Resour Res 37: 253-263.
    • (2001) Water Resour Res , vol.37 , pp. 253-263
    • Chu, Y.1    Jin, Y.2    Flury, M.3    Yates, M.V.4
  • 20
    • 43549116075 scopus 로고    scopus 로고
    • Evidence that viral abundance across oceans and lakes is driven by different biological factors
    • Clasen JL, Brigden SM, Payet JP, Suttle CA. 2008. Evidence that viral abundance across oceans and lakes is driven by different biological factors. Freshwat Biol 53: 1090-1100.
    • (2008) Freshwat Biol , vol.53 , pp. 1090-1100
    • Clasen, J.L.1    Brigden, S.M.2    Payet, J.P.3    Suttle, C.A.4
  • 21
    • 0042364932 scopus 로고    scopus 로고
    • High diversity of unknown picorna-like viruses in the sea
    • Culley AI, Lang AS, Suttle CA. 2003. High diversity of unknown picorna-like viruses in the sea. Nature 424: 1054-1057.
    • (2003) Nature , vol.424 , pp. 1054-1057
    • Culley, A.I.1    Lang, A.S.2    Suttle, C.A.3
  • 22
    • 33745513227 scopus 로고    scopus 로고
    • Metagenomic analysis of coastal RNA virus communities
    • Culley AI, Lang AS, Suttle CA. 2006. Metagenomic analysis of coastal RNA virus communities. Science 312: 1795-1798.
    • (2006) Science , vol.312 , pp. 1795-1798
    • Culley, A.I.1    Lang, A.S.2    Suttle, C.A.3
  • 24
    • 34548331973 scopus 로고    scopus 로고
    • Morphological diversity of virus-like particles within the surface microlayer of scleractinian corals
    • Davy JE, Patten NL. 2007. Morphological diversity of virus-like particles within the surface microlayer of scleractinian corals. Aquat Microb Ecol 47: 37-44.
    • (2007) Aquat Microb Ecol , vol.47 , pp. 37-44
    • Davy, J.E.1    Patten, N.L.2
  • 25
    • 0027525188 scopus 로고
    • Direct electron microscopy study on the morphological diversity of bacteriophage populations in Lake Plußsee
    • Demuth J, Neve H, Witzel KP. 1993. Direct electron microscopy study on the morphological diversity of bacteriophage populations in Lake Plußsee. Appl Environ Microbiol 59: 3378-3384.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3378-3384
    • Demuth, J.1    Neve, H.2    Witzel, K.P.3
  • 28
    • 34249299436 scopus 로고    scopus 로고
    • Viral abundance and genome size distribution in the sediment and water column of marine and freshwater ecosystems
    • Filippini M, Middelboe M. 2007. Viral abundance and genome size distribution in the sediment and water column of marine and freshwater ecosystems. FEMS Microbiol Ecol 60: 397-410.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 397-410
    • Filippini, M.1    Middelboe, M.2
  • 30
    • 64749087387 scopus 로고    scopus 로고
    • Seasonal dynamics and metagenomic characterization of estuarine viriobenthos assemblages by Randomly Amplified Polymorphic DNA PCR (RAPD-PCR)
    • Helton RR, Wommack KE. 2009. Seasonal dynamics and metagenomic characterization of estuarine viriobenthos assemblages by Randomly Amplified Polymorphic DNA PCR (RAPD-PCR). Appl Environ Microbiol 75: 2259-2265.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2259-2265
    • Helton, R.R.1    Wommack, K.E.2
  • 31
    • 33746060151 scopus 로고    scopus 로고
    • Assessment of factors influencing direct enumeration of viruses within estuarine sediments
    • Helton RR, Liu L, Wommack KE. 2006. Assessment of factors influencing direct enumeration of viruses within estuarine sediments. Appl Environ Microbiol 72: 4767-4774.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4767-4774
    • Helton, R.R.1    Liu, L.2    Wommack, K.E.3
  • 33
    • 0028861191 scopus 로고
    • Direct counts of viruses in natural waters and laboratory cultures by epifluorescence microscopy
    • Hennes KP, Suttle CA. 1995. Direct counts of viruses in natural waters and laboratory cultures by epifluorescence microscopy. Limnol Oceanogr 40: 1050-1055.
    • (1995) Limnol Oceanogr , vol.40 , pp. 1050-1055
    • Hennes, K.P.1    Suttle, C.A.2
  • 35
    • 0024025645 scopus 로고
    • Morphological diversity of ruminal bacteriophages from sheep and cattle
    • Klieve AV, Bauchop T. 1988. Morphological diversity of ruminal bacteriophages from sheep and cattle. Appl Environ Microbiol 54: 1637-1641.
    • (1988) Appl Environ Microbiol , vol.54 , pp. 1637-1641
    • Klieve, A.V.1    Bauchop, T.2
  • 36
    • 0027279670 scopus 로고
    • Estimation of ruminal bacteriophage numbers by pulsed-field gel electrophoresis and laser densitometry
    • Klieve AV, Swain RA. 1993. Estimation of ruminal bacteriophage numbers by pulsed-field gel electrophoresis and laser densitometry. Appl Environ Microbiol 59: 2299-2303.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 2299-2303
    • Klieve, A.V.1    Swain, R.A.2
  • 38
    • 43549087815 scopus 로고    scopus 로고
    • Bacteriophage morphotype and genome diversity in Seine River sediment
    • Leroy M, Prigent M, Dutertre M, Confalonieri F, Dubow M. 2008. Bacteriophage morphotype and genome diversity in Seine River sediment. Freshwat Biol 53: 1176-1185.
    • (2008) Freshwat Biol , vol.53 , pp. 1176-1185
    • Leroy, M.1    Prigent, M.2    Dutertre, M.3    Confalonieri, F.4    Dubow, M.5
  • 39
    • 0035403340 scopus 로고    scopus 로고
    • Distribution, isolation, host specificity, and diversity of cyanophages infecting marine Synechococcus spps. in river estuaries
    • Lu J, Chen F, Hodson RH. 2001. Distribution, isolation, host specificity, and diversity of cyanophages infecting marine Synechococcus spps. in river estuaries. Appl Environ Microbiol 67: 3285-3290.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3285-3290
    • Lu, J.1    Chen, F.2    Hodson, R.H.3
  • 41
    • 21844447568 scopus 로고    scopus 로고
    • The third age of phage
    • Mann NH. 2005. The third age of phage. PLoS Biol 3: 753-755.
    • (2005) PLoS Biol , vol.3 , pp. 753-755
    • Mann, N.H.1
  • 42
    • 0028982462 scopus 로고
    • Viral abundance in aquatic systems: A comparison between marine and fresh waters
    • Maranger R, Bird DF. 1995. Viral abundance in aquatic systems: A comparison between marine and fresh waters. Mar Ecol Prog Ser 121: 1-3.
    • (1995) Mar Ecol Prog Ser , vol.121 , pp. 1-3
    • Maranger, R.1    Bird, D.F.2
  • 43
    • 48749097908 scopus 로고    scopus 로고
    • Viral communities associated with healthy and bleaching corals
    • Marhaver KL, Edwards RA, Rohwer F. 2008. Viral communities associated with healthy and bleaching corals. Environ Microbiol 10: 2277-2286.
    • (2008) Environ Microbiol , vol.10 , pp. 2277-2286
    • Marhaver, K.L.1    Edwards, R.A.2    Rohwer, F.3
  • 44
    • 6044228193 scopus 로고    scopus 로고
    • Phage taxonomy: We agree to disagree
    • Nelson D. 2004. Phage taxonomy: We agree to disagree. J Bacteriol 186: 7029-7031.
    • (2004) J Bacteriol , vol.186 , pp. 7029-7031
    • Nelson, D.1
  • 48
    • 0032782014 scopus 로고    scopus 로고
    • Analytical models for virus adsorption and inactivation in unsaturated porous media
    • Sim Y, Chrysikopoulos CV. 1999. Analytical models for virus adsorption and inactivation in unsaturated porous media. Colloids Surf A Physicochem Eng Asp 155: 189-197.
    • (1999) Colloids Surf A Physicochem Eng Asp , vol.155 , pp. 189-197
    • Sim, Y.1    Chrysikopoulos, C.V.2
  • 50
    • 0029667731 scopus 로고    scopus 로고
    • Abundance and production of bacteria and viruses in the Bering and Chukchi seas
    • Steward GF, Smith DC, Azam F. 1996. Abundance and production of bacteria and viruses in the Bering and Chukchi seas. Mar Ecol Prog Ser 131: 287-300.
    • (1996) Mar Ecol Prog Ser , vol.131 , pp. 287-300
    • Steward, G.F.1    Smith, D.C.2    Azam, F.3
  • 51
    • 0034517760 scopus 로고    scopus 로고
    • Genome size distributions indicate variability and similarities among marine viral assemblages from diverse environments
    • Steward GF, Montiel JL, Azam F. 2000. Genome size distributions indicate variability and similarities among marine viral assemblages from diverse environments. Limnol Oceanogr 45: 1697-1706.
    • (2000) Limnol Oceanogr , vol.45 , pp. 1697-1706
    • Steward, G.F.1    Montiel, J.L.2    Azam, F.3
  • 53
    • 58149512846 scopus 로고    scopus 로고
    • Survey of major capsid genes (g23) of T4-type bacteriophages in rice fields in Northeast China
    • Wang G, Jin J, Asakawa S, Kimura M. 2009. Survey of major capsid genes (g23) of T4-type bacteriophages in rice fields in Northeast China. Soil Biol Biochem 41: 423-427.
    • (2009) Soil Biol Biochem , vol.41 , pp. 423-427
    • Wang, G.1    Jin, J.2    Asakawa, S.3    Kimura, M.4
  • 54
    • 4143150674 scopus 로고    scopus 로고
    • Genetic diversity and population dynamics of cyanophage communities in the Chesapeake Bay
    • Wang K, Chen F. 2004. Genetic diversity and population dynamics of cyanophage communities in the Chesapeake Bay. Aquat Microb Ecol 34: 105-116.
    • (2004) Aquat Microb Ecol , vol.34 , pp. 105-116
    • Wang, K.1    Chen, F.2
  • 55
    • 35148876440 scopus 로고    scopus 로고
    • Metagenomic analysis of the microbial community associated with the coral Porites astreoides
    • Wegley L, Edwards R, Rodriguez-Brito B, Liu H, Rohwer F. 2007. Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environ Microbiol 9: 2707-2719.
    • (2007) Environ Microbiol , vol.9 , pp. 2707-2719
    • Wegley, L.1    Edwards, R.2    Rodriguez-Brito, B.3    Liu, H.4    Rohwer, F.5
  • 56
    • 1942486000 scopus 로고    scopus 로고
    • Ecology of prokaryotic viruses
    • Weinbauer MG. 2004. Ecology of prokaryotic viruses. FEMS Microbiol Rev 28: 127-181.
    • (2004) FEMS Microbiol Rev , vol.28 , pp. 127-181
    • Weinbauer, M.G.1
  • 57
    • 0242657555 scopus 로고    scopus 로고
    • Sampling natural viral communities from soil for culture-independent analyses
    • Williamson KE, Wommack KE, Radosevich M. 2003. Sampling natural viral communities from soil for culture-independent analyses. Appl Environ Microbiol 69: 6628-6633.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6628-6633
    • Williamson, K.E.1    Wommack, K.E.2    Radosevich, M.3
  • 60
    • 43049113858 scopus 로고    scopus 로고
    • Randomly amplified polymorphic DNA PCR as a tool for assessment of marine viral richness
    • Winget DM, Wommack KE. 2008. Randomly amplified polymorphic DNA PCR as a tool for assessment of marine viral richness. Appl Environ Microbiol 74: 2612-2618.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 2612-2618
    • Winget, D.M.1    Wommack, K.E.2
  • 61
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton: Viruses in aquatic ecosystems
    • Wommack KE, Colwell RR. 2000. Virioplankton: Viruses in aquatic ecosystems. Microbiol Mol Biol Rev 64: 69-114.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 69-114
    • Wommack, K.E.1    Colwell, R.R.2
  • 64
    • 0032959665 scopus 로고    scopus 로고
    • Population dynamics of chesapeake bay virioplankton: Total-community analysis by pulsed-field gel electrophoresis
    • Wommack KE, Ravel J, Hill RT, Chun J, Colwell RR. 1999. Population dynamics of chesapeake bay virioplankton: Total-community analysis by pulsed-field gel electrophoresis. Appl Environ Microbiol 65: 231-240.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 231-240
    • Wommack, K.E.1    Ravel, J.2    Hill, R.T.3    Chun, J.4    Colwell, R.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.