Low effect of viruses on bacteria in deep anoxic water and sediment of a productive freshwater reservoir

Aquatic Microbial Ecology

Volumn 55, Issue 3, 2009, Pages 255-265

  Ram, A S Pradeep ^a   Sabart, M ^a   Latour, D ^a   Sime Ngando, T ^a  

^a UNIVERSITÉ BLAISE PASCAL   (France)

Author keywords

Bacteria; Keywords Lakes; Lytic infection; Microbial ecology; Seasonal dynamics; Viruses

Indexed keywords

BACTERIA (MICROORGANISMS); CYANOBACTERIA;

EID: 68849086076     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame01300     Document Type: Article

References (58)

1. AFNOR (Association Française de Normalisation) (1990) Eaux, méthodes d'essais: recueil de normes françaises, Union Imprimerie Paragraphic, Paris
2. Bergh O, Borsheim KY, Bratbak G, Heldal M (1989) High abundance of viruses found in aquatic environments. Nature 340:467-468 (Pubitemid 20418897)
3. Berthon JL, Devaux J, Aleya L, Giraudet H, Restituito F (1996) Déterminisme de l'eutrophisation de la retenue de Grangent (Loire): etude des apports en nutriments, de la dynamique des populations phytoplanctoniques et des relations phyto-zooplancton en 1990-1991. Hydroécol Appl 8:99-125
4. Bettarel Y, Sime-Ngando T, Amblard C, Carrias JF, Portelli C (2003) Virioplankton and microbial communities in aquatic systems: a seasonal study in two lakes of differing trophy. Freshw Biol 48:810-822 (Pubitemid 36568017)
5. Bettarel Y, Sime-Ngando T, Amblard C, Dolan J (2004) Viral activity in two contrasting lake ecosystems. Appl Environ Microbiol 70:2941-2951 (Pubitemid 38657813)
6. Bettarel Y, Bouvy M, Dumont C, Sime-Ngando T (2006) Virus-bacterium interaction in water and sediments of West African inland aquatic ecosystems. Appl Environ Microbiol 72:5274-5282 (Pubitemid 44242379)
7. Binder B (1999) Reconsidering the relationship between virally induced bacterial mortality and frequency of infected cells. Aquat Microb Ecol 18:207-215 (Pubitemid 29402926)
8. Brum JR, Steward GF, Jiang SC, Jellison R (2005) Spatial and temporal variability of prokaryotes, viruses, and viral infections of prokaryotes in an alkaline, hypersaline lake. Aquat Microb Ecol 41:247-260 (Pubitemid 43161968)
9. Brussaard CPD, Wilhelm SW, Thingstad F, Weinbauer MG and others (2008) Global scale processes with a nanoscale drive - from viral genes to oceanic biogeochemical cycles. ISME J 2:575-578
10. Choi DH, Hwang CY, Cho BC (2003) Comparison of virus- and bacterivory-induced bacterial mortality in the eutrophic Masan Bay, Korea. Aquat Microb Ecol 30:117-125
11. Colombet J, Sime-Ngando T, Cauchie HM, Fonty G, Hoffmann L, Demeure G (2006) Depth-related gradients of viral activity in Lake Pavin. Appl Environ Microbiol 72:4440-4445 (Pubitemid 43894919)
12. Danovaro R, Dell'anno A, Trucco A, Serresi M, Vanucci S (2001) Determination of virus abundance in marine sediments. Appl Environ Microbiol 67:1384-1387 (Pubitemid 33643587)
13. DeBruyn JM, Leigh-Bell JA, Mckay RML, Bourbonniere RA, Wilhelm SW (2004) Microbial distributions and the impact of phosphorus on bacterial activity in Lake Erie. J Gt Lakes Res 30:166-183
14. EllerG, Layla K, MartinK(2005) Concurrence of aerobic and anaerobic methane oxidation in the water column of Lake PluBsee. Appl Environ Microbiol 71:8925-8928
15. Filippini M, Buesing N, Bettarel Y, Sime-Ngando T, Gessner M (2006) Infection paradox: high abundance but low impact of freshwater benthic viruses. Appl Environ Microbiol 72:4893-4898 (Pubitemid 44078818)
16. Fischer UR, Velimirov B (2002) High control of bacterial production by viruses in a eutrophic oxbow lake. Aquat Microb Ecol 27:1-12 (Pubitemid 34439688)
17. Fischer UR, Wieltschnig C, Kirschner AKT, Velimirov B (2003) Does virus-induced lysis contribute significantly to bacterial mortality in the oxygenated sediment layer of shallow oxbow lakes? Appl Environ Microbiol 69:5281-5289 (Pubitemid 37150752)
18. Fischer UR, Weisz W, Wieltschnig C, Kirschner AKT, Velimirov B (2004) Benthic and pelagic viral decay experiments: a model-based analysis and its applicability. Appl Environ Microbiol 70:6706-6713 (Pubitemid 39518582)
19. Freitag TE, Prosser JI (2003) Community structure of ammonia-oxidizing bacteria within anoxic marine sediments. Appl Environ Microbiol 69:1359-1371
20. Giraudet H, Berthon JL (1999) Rapport annuel du suivi de la communaute' planctonique de la retenue de Grangent et de l'e'tude de l'e'tat physiologique des Cyanobacte'ries lors du processus de de'veloppement des fleurs d'eau. Electricité de France, Agence de l'Eau Loire-Bretagne, Saint-Etienne
21. Gobler CJ, Davis TW, Deonarine SN, Saxton MA, Lavrentyev PJ, Jochem FJ, Wilhelm SW (2008) Grazing and virus-induced mortality of microbial populations before and during the onset of annual hypoxia in Lake Erie. Aquat Microb Ecol 51:117-128
22. Guixa-Boixereu N, Lysnes K, Pedrós-Alió C (1999) Viral lysis and bacterivory during a phytoplankton bloom in a coastal water microcosm. Appl Environ Microbiol 65: 1949-1958 (Pubitemid 129526186)
23. Haglund AL, Lantz P, Tornblom E, Tranvik L (2003) Depth distribution of active bacteria and bacterial activity in lake sediment. FEMS Microbiol Ecol 46:31-38 (Pubitemid 37297718)
24. Hennes KP, Simon M (1995) Significance of bacteriophages for controlling bacterioplankton growth in a mesotrophic lake. Appl Environ Microbiol 61:333-340 (Pubitemid 26446807)
25. Hewson I, Fuhrman JA (2003) Viriobenthos production and virioplankton sorptive scavenging by suspended sediment particles in coastal and pelagic water. Microb Ecol 46:337-347 (Pubitemid 37529228)
26. Jiang S, Steward GF, Jellison R, Chu W, Choi S (2004) Abundance, distribution and diversity of viruses in alkaline, hypersaline, Mono Lake, California. Microb Ecol 47:9-17 (Pubitemid 38398345)
27. Jurgens G, Glockner FO, Aman R, Saano A, Montonen L, Likolammi M, Munster U (2000) Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol Ecol 34:45-56
28. Kirschner AKT, Velimirov B (1999) Benthic bacterial secondary production measured via simultaneous 3H-thymidine and 14C-leucine incorporation, and its implication for the carbon cycle of a shallow macrophyte dominated backwater system. Limnol Oceanogr 44:1871-1881
29. Latour D, Sabido O, Salencon MJ, Giraudet H (2004) Dynamics and metabolic activity of the benthic cyanobacterium Microcystis aeruginosa in the Grangent Reservoir (France). J Plankton Res 26:719-726 (Pubitemid 38940833)
30. Lorenzen CJ (1967) Determination of chlorophyll and phaeopigments: spectrophotometric equation. Limnol Oceanogr 12:343-346
31. Mathias CB, Kirschner KT, Velimirov B (1995) Seasonal variations of virus abundance and virus control of the bacterial population in a backwater system of the Danube River. Appl Environ Microbiol 61:3734-3740 (Pubitemid 26454331)
32. Mei ML, Danovaro R (2004) Virus production and life strategies in aquatic sediments. Limnol Oceanogr 49:459-470 (Pubitemid 38536894)
33. Middelboe M, Glud RN, Finster K (2003) Distribution of viruses and bacteria in relation to diagenetic activity in an estuarine sediment. Limnol Oceanogr 48:1447-1456 (Pubitemid 36964765)
34. Middelboe M, Jacquet S, Weinbauer MG (2008) Viruses in freshwater ecosystems: an introduction to the exploration of viruses in new aquatic habitats. Freshw Biol 53: 1069-1075 (Pubitemid 351677375)
35. Motomizu S, Toshiaki W, Kyoji T (1983) Spectrophotometric determination of phosphate in river waters with molybdate and malachite green. Analyst 108:361-367
36. Murray AG, Jackson GA (1992) Viral dynamics: a model of the effects of size, shape, motion and abundance of single-celled planktonic organisms and other particles. Mar Ecol Prog Ser 89:103-116
37. Noble RT, Fuhrman JA (1998) Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat Microb Ecol 14:113-118
38. Pedros-Alio C, Calderon-Paz JI, Gasol JM (2000) Comparative analysis shows bacterivory, not viral lysis, controls the abundance of heterotrophic prokaryotic plankton. FEMS Microbiol Ecol 32:157-165 (Pubitemid 30245992)
39. Parada V, Herndl GJ, Weinbauer MG (2006) Viral burst size of heterotrophic prokaryotes in aquatic systems. J Mar Biol Assoc UK 86:613-621
40. Pradeep Ram AS, Boucher D, Sime-Ngando T, Debroas D, Romagoux JC (2005) Phage bacteriolysis, protistan bacterivory potential, and bacterial production in a freshwater reservoir: coupling with temperature. Microb Ecol 50:64-72 (Pubitemid 41414252)
41. Proctor LM, Fuhrman JA (1991) Roles of viral infection in organic particle flux. Mar Ecol Prog Ser 69:133-142
42. Rodier L (1996) L'analyse de l'eau, eaux naturelles, eaux résiduaires, eau de mer, 8th edn. Dunod, Paris
43. Sime-Ngando T, Colombet J (2009) Viruses and prophages in the dynamics of aquatic ecosystems. Can J Microbiol 55:95-109
44. Sime-Ngando T, Mignot JP, Amblard C, Bourdier G, Devilettes C, Quilblier-Lloberas C (1996) Characterization of planktonic virus-like particles in a French mountain lake: methodological aspects and preliminary results. Ann Limnol 32:1-5 (Pubitemid 27050334)
45. Sime-Ngando T, Bettarel Y, Chartogne C, Sean K (2003) The imprint of wild viruses on freshwater microbial ecology. Recent Res Dev Microbiol 7:481-497
46. Simek K, Pernthaler J, Weinbauer MG, Hornak K and others (2001) Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl Environ Microbiol 67:2723-2733 (Pubitemid 33639750)
47. Sommaruga R, Krossbacher M, Salvenmoser W, Catalan J, Psenner R (1995) Presence of large virus-like particles in a eutrophic reservoir. Aquat Microb Ecol 9:305-308 (Pubitemid 3019407)
48. Suttle CA (2007) Marine viruses - major players in the global ecosystem. Nat Rev Microbiol 5:801-812
49. Tijdens M, Hoogveld HL, Kamst-van Agterveld MP, Simis SGH, Baudoux AC, Laanbroek HJ, Gons HJ (2008) Population dynamics and diversity of viruses, bacteria and phytoplankton in a shallow eutrophic lake. Microb Ecol 56:29-42 (Pubitemid 351799164)
50. Torsvik V, Øvreas L, Thingstad TF (2002) Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296:1064-1066 (Pubitemid 34517113)
51. Weinbauer MG (2004) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28:127-181
52. Weinbauer MG, Hofle MG (1998) Significance of viral lysis and flagellate grazing as factors controlling bacterio- plankton production in a eutrophic lake. Appl Environ Microbiol 64:431-438
53. Weinbauer MG, Winter C, Hofle MG (2002) Reconsidering transmission electron microscopy based estimates of viral infection of bacterioplankton using conversion factors derived from natural communities. Aquat Microb Ecol 27:103-110 (Pubitemid 34287216)
54. Weinbauer MG, Brettar I, Hofle MG (2003) Lysogeny and virus-induced mortality of bacterioplankton in surface, deep and anoxic marine waters. Limnol Oceanogr 48:1457-1465 (Pubitemid 36964766)
55. Wetzel RG (2001) Limnology: lake and river ecosystems, 3rdedn. Academic Press, New York
56. Wetzel RG, Likens GE (1995) Limnological analysis, 2nd edn. Springer-Verlag, New York
57. Wilhelm SW, Matteson AR (2008) Freshwater and marine virioplankton: a brief overview of commonalities and differences. Freshw Biol 53:1076-1089
58. Wilhelm SW, Suttle CA (1999) Viruses and nutrient cycles in the sea. BioScience 49:781-788