-
1
-
-
0344613211
-
Ribosomal ITS sequences and plant phylogenetic inference
-
Álvarez I, Wendel JF (2003) Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol 29(3): 417-434.
-
(2003)
Mol Phylogenet Evol
, vol.29
, Issue.3
, pp. 417-434
-
-
Álvarez, I.1
Wendel, J.F.2
-
3
-
-
84855172141
-
Multivariate assessment of phenetic relationships within the tribe Luciliini
-
Brown KR (1979) Multivariate assessment of phenetic relationships within the tribe Luciliini. Aust J Zool 27: 465-477.
-
(1979)
Aust J Zool
, vol.27
, pp. 465-477
-
-
Brown, K.R.1
-
4
-
-
0842280551
-
Molecular identification of forensically important blow fly species (Diptera: Calliphoridae) in Taiwan
-
Chen WY, Hung TH, Shiao SF (2004) Molecular identification of forensically important blow fly species (Diptera: Calliphoridae) in Taiwan. J Med Entomol 41: 47-57.
-
(2004)
J Med Entomol
, vol.41
, pp. 47-57
-
-
Chen, W.Y.1
Hung, T.H.2
Shiao, S.F.3
-
5
-
-
0034084748
-
The significance of a coincidence between evolutionary landmarks found in mating affinity and a DNA sequence
-
Coleman AW (2000) The significance of a coincidence between evolutionary landmarks found in mating affinity and a DNA sequence. Protist 151: 1-9.
-
(2000)
Protist
, vol.151
, pp. 1-9
-
-
Coleman, A.W.1
-
6
-
-
0037677692
-
ITS2 is a double-edged tool for eukaryote evolutionary comparisons
-
Coleman AW (2003) ITS2 is a double-edged tool for eukaryote evolutionary comparisons. Trends Genet 19: 370-375.
-
(2003)
Trends Genet
, vol.19
, pp. 370-375
-
-
Coleman, A.W.1
-
7
-
-
34250821680
-
Pan-eukaryote ITS2 homologies revealed by RNA secondary structure
-
Coleman AW (2007) Pan-eukaryote ITS2 homologies revealed by RNA secondary structure. Nucleic Acids Res 35: 3322-3329.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3322-3329
-
-
Coleman, A.W.1
-
8
-
-
57649155508
-
Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide
-
Coleman AW (2009) Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide. Mol Phylogenet Evol 50: 197-203.
-
(2009)
Mol Phylogenet Evol
, vol.50
, pp. 197-203
-
-
Coleman, A.W.1
-
9
-
-
0036148914
-
Exploring the phylogenetic utility of its sequences for animals: a test case for abalone (haliotis)
-
Coleman AW, Vacquier VD (2002) Exploring the phylogenetic utility of its sequences for animals: a test case for abalone (haliotis). J Mol Evol 54: 246-257.
-
(2002)
J Mol Evol
, vol.54
, pp. 246-257
-
-
Coleman, A.W.1
Vacquier, V.D.2
-
10
-
-
0036276111
-
Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast
-
Côté CA, Greer CL, Peculis BA (2002) Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast. RNA 8: 786-797.
-
(2002)
Rna
, vol.8
, pp. 786-797
-
-
Côté, C.A.1
Greer, C.L.2
Peculis, B.A.3
-
11
-
-
67650727366
-
VARNA: interactive drawing and editing of the RNA secondary structure
-
Darty K, Denise A, Ponty Y (2009) VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics 25: 1974-1975.
-
(2009)
Bioinformatics
, vol.25
, pp. 1974-1975
-
-
Darty, K.1
Denise, A.2
Ponty, Y.3
-
12
-
-
33644502901
-
Genetic approaches for studying myiasis-causing flies: molecular markers and mitochondrial genomics
-
de Azeredo-Espin AM, Lessinger AC (2006) Genetic approaches for studying myiasis-causing flies: molecular markers and mitochondrial genomics. Genetica 126: 111-131.
-
(2006)
Genetica
, vol.126
, pp. 111-131
-
-
de Azeredo-Espin, A.M.1
Lessinger, A.C.2
-
13
-
-
0027500136
-
Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis
-
Dixon MT, Hillis DM (1993) Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis. Mol Biol Evol 10: 256-267.
-
(1993)
Mol Biol Evol
, vol.10
, pp. 256-267
-
-
Dixon, M.T.1
Hillis, D.M.2
-
14
-
-
0029360612
-
Concerted evolution of repetitive DNA sequences
-
Elder JF Jr, Turner BJ (1995) Concerted evolution of repetitive DNA sequences. Q Rev Biol 70: 297-320.
-
(1995)
Q Rev Biol
, vol.70
, pp. 297-320
-
-
Elder Jr., J.F.1
Turner, B.J.2
-
16
-
-
0003437299
-
-
Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
-
Felsenstein J (2005) PHYLIP (phylogeny inference package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
-
(2005)
PHYLIP (phylogeny Inference Package) Version 3.6
-
-
Felsenstein, J.1
-
17
-
-
0030985312
-
An episodic change of rDNA nucleotide substitution rate has occurred during the emergence of the insect order Diptera
-
Friedrich M, Tautz D (1997) An episodic change of rDNA nucleotide substitution rate has occurred during the emergence of the insect order Diptera. Mol Biol Evol 14: 644-653.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 644-653
-
-
Friedrich, M.1
Tautz, D.2
-
18
-
-
0034548433
-
The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5′ =& 3′ exonucleases
-
Geerlings TH, Vos JC, Raué HA (2000) The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5′ =& 3′ exonucleases. RNA 6: 1698-1703.
-
(2000)
Rna
, vol.6
, pp. 1698-1703
-
-
Geerlings, T.H.1
Vos, J.C.2
Raué, H.A.3
-
21
-
-
0344682190
-
A systematic revision of the Mesembrinellidae, stat. nov. (Diptera, Cyclorrhapha)
-
Guimarães JH (1977) A systematic revision of the Mesembrinellidae, stat. nov. (Diptera, Cyclorrhapha). Arquivos de Zoologia 29: 1-109.
-
(1977)
Arquivos De Zoologia
, vol.29
, pp. 1-109
-
-
Guimarães, J.H.1
-
22
-
-
0001644075
-
As miíases na região Neotropical: identificação, biologia e bibliografia
-
Guimarães JH, Papavero N, Prado AP (1983) As miíases na região Neotropical: identificação, biologia e bibliografia. Rev Bras Zool 1: 239-416.
-
(1983)
Rev Bras Zool
, vol.1
, pp. 239-416
-
-
Guimarães, J.H.1
Papavero, N.2
Prado, A.P.3
-
23
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
24
-
-
0001791833
-
Comparative sequence analysis and the structure of 16S and 23S rRNA
-
R. A.(Zimmermann and A. E. Dahlberg (Eds.), New York: CRC Press
-
Gutell RR (1996) Comparative sequence analysis and the structure of 16S and 23S rRNA. In: (Zimmermann RA, Dahlberg AE (eds) Ribosomal RNA: structure, evolution, processing, and function in protein biosynthesis. CRC Press, New York, pp 111-128.
-
(1996)
Ribosomal RNA: Structure, Evolution, Processing, and Function in Protein Biosynthesis
, pp. 111-128
-
-
Gutell, R.R.1
-
25
-
-
0028261409
-
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
-
Gutell RR, Larsen N, Woese CR (1994) Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol Rev 58: 10-26.
-
(1994)
Microbiol Rev
, vol.58
, pp. 10-26
-
-
Gutell, R.R.1
Larsen, N.2
Woese, C.R.3
-
26
-
-
0033967817
-
Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): implications for phylogenetic and microssatellite studies
-
Harris DJ, Crandall KA (2000) Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): implications for phylogenetic and microssatellite studies. Mol Biol Evol 17(2): 284-291.
-
(2000)
Mol Biol Evol
, vol.17
, Issue.2
, pp. 284-291
-
-
Harris, D.J.1
Crandall, K.A.2
-
27
-
-
0026300584
-
Ribosomal DNA: molecular evolution and phylogenetic inference
-
Hillis DM, Dixon MT (1991) Ribosomal DNA: molecular evolution and phylogenetic inference. Q Rev Biol 66: 411-453.
-
(1991)
Q Rev Biol
, vol.66
, pp. 411-453
-
-
Hillis, D.M.1
Dixon, M.T.2
-
28
-
-
0037379673
-
Phylogeny estimation: traditional and Bayesian approaches
-
Holder H, Lewis PO (2003) Phylogeny estimation: traditional and Bayesian approaches. Nat Rev Genet 4: 75-284.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 75-284
-
-
Holder, H.1
Lewis, P.O.2
-
29
-
-
0029143941
-
Genetic variability in mtDNA of Cochliomyia hominivorax (Diptera: Calliphoridae) from Brazil
-
Infante MEV, Azeredo-Espin AML (1995) Genetic variability in mtDNA of Cochliomyia hominivorax (Diptera: Calliphoridae) from Brazil. Biochem Genet 33: 237-256.
-
(1995)
Biochem Genet
, vol.33
, pp. 237-256
-
-
Infante, M.E.V.1
Azeredo-Espin, A.M.L.2
-
30
-
-
0017236924
-
Late steps in the maturation of Drosophila 26 S ribosomal RNA: generation of 5-8 S and 2 S RNAs by cleavages occurring in the cytoplasm
-
Jordan BR, Jourdan R, Jacq B (1976) Late steps in the maturation of Drosophila 26 S ribosomal RNA: generation of 5-8 S and 2 S RNAs by cleavages occurring in the cytoplasm. J Mol Biol 101: 85-105.
-
(1976)
J Mol Biol
, vol.101
, pp. 85-105
-
-
Jordan, B.R.1
Jourdan, R.2
Jacq, B.3
-
31
-
-
0036276111
-
Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast
-
Joseph N, Krauskopf E, Vera MI, Michot B (1999) Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast. RNA 8: 786-797.
-
(1999)
Rna
, vol.8
, pp. 786-797
-
-
Joseph, N.1
Krauskopf, E.2
Vera, M.I.3
Michot, B.4
-
32
-
-
4444293341
-
The mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae)
-
Junqueira AC, Lessinger AC, Torres TT, da Silva FR, Vettore AL, Arruda P, Azeredo-Espin AM (2004) The mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae). Gene 339: 7-15.
-
(2004)
Gene
, vol.339
, pp. 7-15
-
-
Junqueira, A.C.1
Lessinger, A.C.2
Torres, T.T.3
da Silva, F.R.4
Vettore, A.L.5
Arruda, P.6
Azeredo-Espin, A.M.7
-
34
-
-
33750441121
-
Ribosomal DNA in the grasshopper Podisma pedestris: escape from concerted evolution
-
Keller I, Chintauan-Marquier IC, Veltsos P, Nichols RA (2006) Ribosomal DNA in the grasshopper Podisma pedestris: escape from concerted evolution. Genetics 174(2): 863-874.
-
(2006)
Genetics
, vol.174
, Issue.2
, pp. 863-874
-
-
Keller, I.1
Chintauan-Marquier, I.C.2
Veltsos, P.3
Nichols, R.A.4
-
35
-
-
75549088448
-
The ITS2 database III: Sequences and structures for phylogeny
-
Koetschan C, Förster F, Keller A, Schleicher T, Ruderisch B, Schwarz R, Müller T, Wolf M, Schultz J (2010) The ITS2 database III: sequences and structures for phylogeny. Nucleic Acids Res 38(Database issue): D275-D279.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.Database issue
-
-
Koetschan, C.1
Förster, F.2
Keller, A.3
Schleicher, T.4
Ruderisch, B.5
Schwarz, R.6
Müller, T.7
Wolf, M.8
Schultz, J.9
-
36
-
-
22644443428
-
Studies on the calyptratae muscoid flies from Japan. V. Revision of the tribe Luciliini (Diptera: Calliphoridae)
-
Kurahashi H (1966) Studies on the calyptratae muscoid flies from Japan. V. Revision of the tribe Luciliini (Diptera: Calliphoridae). Pac Insects 11: 105-124.
-
(1966)
Pac Insects
, vol.11
, pp. 105-124
-
-
Kurahashi, H.1
-
37
-
-
77956779711
-
Molecular phylogeny of the Calyptratae (Diptera: Cyclorrhapha) with an emphasis on the superfamily Oestroidea and the position of Mystacinobiidae and McAlpine's fly
-
Kutty SN, Pape T, Wiegmann BM, Meier R (2010) Molecular phylogeny of the Calyptratae (Diptera: Cyclorrhapha) with an emphasis on the superfamily Oestroidea and the position of Mystacinobiidae and McAlpine's fly. Syst Entomol 35: 614-635.
-
(2010)
Syst Entomol
, vol.35
, pp. 614-635
-
-
Kutty, S.N.1
Pape, T.2
Wiegmann, B.M.3
Meier, R.4
-
38
-
-
0033766394
-
The mitochondrial genome of the primary screwworm fly Cochliomyia hominivorax (Diptera: Calliphoridae
-
Lessinger AC, Junqueira ACM, Lemos TA, Kemper EL, da Silva FR, Vettore AL, Arruda P, Azeredo-Espin AM (2000) The mitochondrial genome of the primary screwworm fly Cochliomyia hominivorax (Diptera: Calliphoridae. Insect Mol Biol 9(5): 521-529.
-
(2000)
Insect Mol Biol
, vol.9
, Issue.5
, pp. 521-529
-
-
Lessinger, A.C.1
Junqueira, A.C.M.2
Lemos, T.A.3
Kemper, E.L.4
da Silva, F.R.5
Vettore, A.L.6
Arruda, P.7
Azeredo-Espin, A.M.8
-
39
-
-
4444231360
-
Analysis of a conserved duplicated tRNA gene in the mitochondrial genome of blowflies
-
Lessinger AC, Junqueira ACM, Conte FF, Azeredo-Espin AM (2004) Analysis of a conserved duplicated tRNA gene in the mitochondrial genome of blowflies. Gene 339: 1-6.
-
(2004)
Gene
, vol.339
, pp. 1-6
-
-
Lessinger, A.C.1
Junqueira, A.C.M.2
Conte, F.F.3
Azeredo-Espin, A.M.4
-
40
-
-
79957452882
-
Potential pitfalls of modelling ribosomal RNA data in phylogenetic tree reconstruction: evidence from case studies in the Metazoa
-
Letsch HO, Kjer KM (2011) Potential pitfalls of modelling ribosomal RNA data in phylogenetic tree reconstruction: evidence from case studies in the Metazoa. BMC Evol Biol 11: 146.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 146
-
-
Letsch, H.O.1
Kjer, K.M.2
-
41
-
-
0033360956
-
Concerted evolution: molecular mechanisms and biological implications
-
Liao D (1999) Concerted evolution: molecular mechanisms and biological implications. Am J Hum Genet 64: 24-30.
-
(1999)
Am J Hum Genet
, vol.64
, pp. 24-30
-
-
Liao, D.1
-
42
-
-
0001759154
-
Observations on the life-histories, nutritional requirements and fecundity of blowfies
-
Mackerras MJ (1933) Observations on the life-histories, nutritional requirements and fecundity of blowfies. Bull Entomol Res 24: 353-362.
-
(1933)
Bull Entomol Res
, vol.24
, pp. 353-362
-
-
Mackerras, M.J.1
-
44
-
-
0029939247
-
The 3′ end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism
-
Mitchell P, Petfalski E, Tollervey D (1996) The 3′ end of yeast 5. 8S rRNA is generated by an exonuclease processing mechanism. Genes Dev 10: 502-513.
-
(1996)
Genes Dev
, vol.10
, pp. 502-513
-
-
Mitchell, P.1
Petfalski, E.2
Tollervey, D.3
-
45
-
-
0030702085
-
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′ =& 5′ exoribonucleases
-
Mitchell P, Petfalski E, Shevchenko A, Mann M, Tollervey D (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′ =& 5′ exoribonucleases. Cell 91: 457-466.
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, E.2
Shevchenko, A.3
Mann, M.4
Tollervey, D.5
-
46
-
-
34548352883
-
Distinguishing species
-
Müller T, Philippi N, Dandekar T, Schultz J, Wolf M (2007) Distinguishing species. RNA 13: 1469-1472.
-
(2007)
Rna
, vol.13
, pp. 1469-1472
-
-
Müller, T.1
Philippi, N.2
Dandekar, T.3
Schultz, J.4
Wolf, M.5
-
47
-
-
0028900996
-
Evolutionary analyses of DNA sequences subject to constraints of secondary structure
-
Muse SV (1995) Evolutionary analyses of DNA sequences subject to constraints of secondary structure. Genetics 139: 1429-1439.
-
(1995)
Genetics
, vol.139
, pp. 1429-1439
-
-
Muse, S.V.1
-
48
-
-
0032102533
-
Species wide homogeneity of nuclear ribosomal ITS2 sequences in the spider mite Tetranychus urticae contrasts with excessive mitochondrial COI polymorphism
-
Navajas M, Lagnel J, Gutierrez J, Boursot P (1998) Species wide homogeneity of nuclear ribosomal ITS2 sequences in the spider mite Tetranychus urticae contrasts with excessive mitochondrial COI polymorphism. J Hered 80: 742-752.
-
(1998)
J Hered
, vol.80
, pp. 742-752
-
-
Navajas, M.1
Lagnel, J.2
Gutierrez, J.3
Boursot, P.4
-
49
-
-
33947328403
-
Using COI barcodes to identify forensically and medically important blowflies
-
Nelson LA, Wallman JF, Dowton M (2007) Using COI barcodes to identify forensically and medically important blowflies. Med Vet Entomol 21: 44-52.
-
(2007)
Med Vet Entomol
, vol.21
, pp. 44-52
-
-
Nelson, L.A.1
Wallman, J.F.2
Dowton, M.3
-
50
-
-
41649111471
-
Identification of forensically important Chrysomya (Diptera: Calliphoridae) species using the second ribosomal internal transcribed spacer (ITS2)
-
Nelson LA, Wallman JF, Dowton M (2008) Identification of forensically important Chrysomya (Diptera: Calliphoridae) species using the second ribosomal internal transcribed spacer (ITS2). Forensic Sci Int 177: 238-247.
-
(2008)
Forensic Sci Int
, vol.177
, pp. 238-247
-
-
Nelson, L.A.1
Wallman, J.F.2
Dowton, M.3
-
51
-
-
0003078723
-
Approximate Bayesian inference by the weighted likelihood bootstrap (with discussion)
-
Newton MA, Raftery AE (1994) Approximate Bayesian inference by the weighted likelihood bootstrap (with discussion). J R Stat Soc B Met 56: 3-48.
-
(1994)
J R Stat Soc B Met
, vol.56
, pp. 3-48
-
-
Newton, M.A.1
Raftery, A.E.2
-
53
-
-
1642341403
-
Bayesian phylogentic analysis of combined data
-
Nylander JA, Ronquist F, Huelsenbeck JP, Nieves-Aldrey JL (2004) Bayesian phylogentic analysis of combined data. Syst Biol 53(1): 47-67.
-
(2004)
Syst Biol
, vol.53
, Issue.1
, pp. 47-67
-
-
Nylander, J.A.1
Ronquist, F.2
Huelsenbeck, J.P.3
Nieves-Aldrey, J.L.4
-
54
-
-
0036804074
-
Molecular approaches to the study of myiasis-causing larvae
-
Otranto D, Stevens JR (2002) Molecular approaches to the study of myiasis-causing larvae. Int J Parasitol 32: 1345-1360.
-
(2002)
Int J Parasitol
, vol.32
, pp. 1345-1360
-
-
Otranto, D.1
Stevens, J.R.2
-
55
-
-
79959866268
-
-
Version 1. 0, Accessed 2 July 2011
-
Pape T, Thompson FC (eds) (2010) Systema Dipterorum, Version 1. 0. http://www. diptera. org/. Accessed 2 July 2011.
-
(2010)
Systema Dipterorum
-
-
Pape, T.1
Thompson, F.C.2
-
56
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson DR, Foulds LR (1981) Comparison of phylogenetic trees. Math Biosci 53: 131-147.
-
(1981)
Math Biosci
, vol.53
, pp. 131-147
-
-
Robinson, D.R.1
Foulds, L.R.2
-
57
-
-
0002146060
-
Blowflies (Diptera, Calliphoridae) of Fennoscandia and Denmark
-
Rognes K (1991) Blowflies (Diptera, Calliphoridae) of Fennoscandia and Denmark. Fauna Entomologica Scandinavica 24: 1-272.
-
(1991)
Fauna Entomologica Scandinavica
, vol.24
, pp. 1-272
-
-
Rognes, K.1
-
58
-
-
0347771458
-
The Calliphoridae (blowflies) (Diptera. Oestroidea) are not a monophyletic group
-
Rognes K (1997) The Calliphoridae (blowflies) (Diptera. Oestroidea) are not a monophyletic group. Cladistics 13: 27-66.
-
(1997)
Cladistics
, vol.13
, pp. 27-66
-
-
Rognes, K.1
-
59
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
60
-
-
0029091043
-
Estimating substitution rates in ribosomal RNA genes
-
Rzhetsky A (1995) Estimating substitution rates in ribosomal RNA genes. Genetics 141: 771-783.
-
(1995)
Genetics
, vol.141
, pp. 771-783
-
-
Rzhetsky, A.1
-
62
-
-
42649090839
-
DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads
-
Sass C, Little DP, Stevenson DW, Specht CD (2007) DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads. PLoS One 2: e1154.
-
(2007)
PLoS One
, vol.2
-
-
Sass, C.1
Little, D.P.2
Stevenson, D.W.3
Specht, C.D.4
-
63
-
-
0035156561
-
RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods
-
Savill NJ, Hoyle DC, Higgs PG (2001) RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods. Genetics 157: 399-411.
-
(2001)
Genetics
, vol.157
, pp. 399-411
-
-
Savill, N.J.1
Hoyle, D.C.2
Higgs, P.G.3
-
65
-
-
0028512129
-
A stochastic model for the evolution of autocorrelated DNA sequences
-
Schöniger M, von Haeseler A (1994) A stochastic model for the evolution of autocorrelated DNA sequences. Mol Phylogenet Evol 3: 240-247.
-
(1994)
Mol Phylogenet Evol
, vol.3
, pp. 240-247
-
-
Schöniger, M.1
von Haeseler, A.2
-
66
-
-
15444361843
-
A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota
-
Schultz J, Maisel S, Gerlach D, Müller T, Wolf M (2005) A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. RNA 11: 361-364.
-
(2005)
Rna
, vol.11
, pp. 361-364
-
-
Schultz, J.1
Maisel, S.2
Gerlach, D.3
Müller, T.4
Wolf, M.5
-
67
-
-
33747844305
-
The internal transcribed spacer 2 database: A web server for (not only) low level phylogenetic analyses
-
Schultz J, Müller T, Achtziger M, Seibel PN, Dandekar T, Wolf M (2006) The internal transcribed spacer 2 database: a web server for (not only) low level phylogenetic analyses. Nucleic Acids Res 34(Web Server issue): W704-W707.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.Web Server issue
-
-
Schultz, J.1
Müller, T.2
Achtziger, M.3
Seibel, P.N.4
Dandekar, T.5
Wolf, M.6
-
68
-
-
33751213606
-
4SALE: a tool for synchronous RNA sequence and secondary structure alignment and editing
-
Seibel PN, Müller T, Dandekar T, Schultz J, Wolf M (2006) 4SALE: a tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics 7: 498.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 498
-
-
Seibel, P.N.1
Müller, T.2
Dandekar, T.3
Schultz, J.4
Wolf, M.5
-
69
-
-
34247236615
-
Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case
-
Seifert KA, Samson RA, Dewaard JR, Houbraken J, Lévesque CA, Moncalvo JM, Louis-Seize G, Hebert PD (2007) Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case. Proc Natl Acad Sci USA 104: 3901-3906.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 3901-3906
-
-
Seifert, K.A.1
Samson, R.A.2
Dewaard, J.R.3
Houbraken, J.4
Lévesque, C.A.5
Moncalvo, J.M.6
Louis-Seize, G.7
Hebert, P.D.8
-
70
-
-
38549087890
-
The ITS2 database II: Homology modelling RNA structure for molecular systematics
-
Selig C, Wolf M, Müller T, Dandekar T, Schultz J (2008) The ITS2 database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Res 36(Database issue): D377-D380.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.Database issue
-
-
Selig, C.1
Wolf, M.2
Müller, T.3
Dandekar, T.4
Schultz, J.5
-
71
-
-
84963101555
-
A phenetic analysis of the Luciliini (Diptera: Calliphoridae)
-
Shepard JH (1971) A phenetic analysis of the Luciliini (Diptera: Calliphoridae). Syst Zool 20: 223-232.
-
(1971)
Syst Zool
, vol.20
, pp. 223-232
-
-
Shepard, J.H.1
-
72
-
-
0000999722
-
106 Calliphoridae
-
In: McAlpine JF (ed), Research Branch, Agriculture Canada, Monograph 28
-
Shewell G (1987) 106 Calliphoridae. In: McAlpine JF (ed) Manual of Neartic Diptera, vol 2. Research Branch, Agriculture Canada, Monograph 28, pp 1133-1145.
-
(1987)
Manual of Neartic Diptera
, vol.2
, pp. 1133-1145
-
-
Shewell, G.1
-
73
-
-
79959694601
-
Chrysomyinae (Diptera: Calliphoridae) is monophyletic: a molecular systematics analysis
-
Singh B, Wells JD (2011) Chrysomyinae (Diptera: Calliphoridae) is monophyletic: a molecular systematics analysis. Syst Entomol 36(3): 415-420.
-
(2011)
Syst Entomol
, vol.36
, Issue.3
, pp. 415-420
-
-
Singh, B.1
Wells, J.D.2
-
74
-
-
79955975623
-
Molecular phylogeny of the blowfly genus Chrysomya
-
Singh B, Kurahashi H, Wells JD (2011) Molecular phylogeny of the blowfly genus Chrysomya. Med Vet Entomol 25(2): 126-134.
-
(2011)
Med Vet Entomol
, vol.25
, Issue.2
, pp. 126-134
-
-
Singh, B.1
Kurahashi, H.2
Wells, J.D.3
-
75
-
-
55949135461
-
Molecular evolution and phylogenetic utility of the internal transcribed spacer 2 (ITS2) in Calyptratae (Diptera: Brachycera)
-
Song Z, Wang X, Liang G (2008a) Molecular evolution and phylogenetic utility of the internal transcribed spacer 2 (ITS2) in Calyptratae (Diptera: Brachycera). J Mol Evol 67: 448-464.
-
(2008)
J Mol Evol
, vol.67
, pp. 448-464
-
-
Song, Z.1
Wang, X.2
Liang, G.3
-
76
-
-
38649101597
-
Species identification of some common necrophagous flies in Guangdong province, southern China based on the rDNA internal transcribed spacer 2 (ITS2)
-
Song Z, Wang X, Liang G (2008b) Species identification of some common necrophagous flies in Guangdong province, southern China based on the rDNA internal transcribed spacer 2 (ITS2). Forensic Sci Int 175: 17-22.
-
(2008)
Forensic Sci Int
, vol.175
, pp. 17-22
-
-
Song, Z.1
Wang, X.2
Liang, G.3
-
77
-
-
0142061033
-
The evolution of myiasis in blowflies (Calliphoridae)
-
Stevens JR (2003) The evolution of myiasis in blowflies (Calliphoridae). Int J Parasitol 33: 1105-1113.
-
(2003)
Int J Parasitol
, vol.33
, pp. 1105-1113
-
-
Stevens, J.R.1
-
78
-
-
0029810835
-
Classification of the genus Lucilia (Diptera: Calliphoridae): a preliminary parsimony analysis
-
Stevens J, Wall R (1996) Classification of the genus Lucilia (Diptera: Calliphoridae): a preliminary parsimony analysis. J Nat Hist 30: 1087-1094.
-
(1996)
J Nat Hist
, vol.30
, pp. 1087-1094
-
-
Stevens, J.1
Wall, R.2
-
79
-
-
0030613171
-
The evolution of ectoparasitism in the genus Lucilia (Diptera: Calliphoridae)
-
Stevens J, Wall R (1997) The evolution of ectoparasitism in the genus Lucilia (Diptera: Calliphoridae). Int J Parasitol 27: 51-59.
-
(1997)
Int J Parasitol
, vol.27
, pp. 51-59
-
-
Stevens, J.1
Wall, R.2
-
80
-
-
0035882598
-
Genetic relationships between blowflies (Calliphoridae) of forensic importance
-
Stevens J, Wall R (2001) Genetic relationships between blowflies (Calliphoridae) of forensic importance. Forensic Sci Int 120: 116-123.
-
(2001)
Forensic Sci Int
, vol.120
, pp. 116-123
-
-
Stevens, J.1
Wall, R.2
-
81
-
-
33344467738
-
The evolution of myiasis in humans and other animals in the Old and New Worlds (part I): phylogenetic analyses
-
Stevens JR, Wallman JF (2006) The evolution of myiasis in humans and other animals in the Old and New Worlds (part I): phylogenetic analyses. Trends Parasitol 22: 129-136.
-
(2006)
Trends Parasitol
, vol.22
, pp. 129-136
-
-
Stevens, J.R.1
Wallman, J.F.2
-
82
-
-
33645092388
-
The evolution of myiasis in humans and other animals in the Old and New Worlds (part II): biological and life-history studies
-
Stevens JR, Wallman JF, Otranto D, Wall R, Pape T (2006) The evolution of myiasis in humans and other animals in the Old and New Worlds (part II): biological and life-history studies. Trends Parasitol 22: 181-188.
-
(2006)
Trends Parasitol
, vol.22
, pp. 181-188
-
-
Stevens, J.R.1
Wallman, J.F.2
Otranto, D.3
Wall, R.4
Pape, T.5
-
83
-
-
0037058983
-
Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics
-
Suzuki Y, Glazko GV, Nei M (2002) Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc Natl Acad Sci USA 99(25): 16138-16143.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.25
, pp. 16138-16143
-
-
Suzuki, Y.1
Glazko, G.V.2
Nei, M.3
-
84
-
-
75649121122
-
Comparison of intrinsic stacking energies of ten unique dinucleotide steps in A-RNA and B-DNA duplexes. Can we determine correct order of stability by quantum-chemical calculations?
-
Erratum in: J Phys Chem B (2010) 114: 2547
-
Svozil D, Hobza P, Sponer J (2010) Comparison of intrinsic stacking energies of ten unique dinucleotide steps in A-RNA and B-DNA duplexes. Can we determine correct order of stability by quantum-chemical calculations? J Phys Chem B 114: 1191-1203; Erratum in: J Phys Chem B (2010) 114: 2547.
-
(2010)
J Phys Chem B
, vol.114
, pp. 1191-1203
-
-
Svozil, D.1
Hobza, P.2
Sponer, J.3
-
85
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
86
-
-
0024043089
-
Complete sequences of the rRNA genes of Drosophila melanogaster
-
Tautz D, Hancock JM, Webb DA, Tautz C, Dover GA (1988) Complete sequences of the rRNA genes of Drosophila melanogaster. Mol Biol Evol 5: 366-376.
-
(1988)
Mol Biol Evol
, vol.5
, pp. 366-376
-
-
Tautz, D.1
Hancock, J.M.2
Webb, D.A.3
Tautz, C.4
Dover, G.A.5
-
87
-
-
79951480123
-
-
R Development Core Team, R Foundation for Statistical Computing, Vienna. ISBN 3-900051-07-0, url
-
R Development Core Team (2010) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. ISBN 3-900051-07-0, url: http://www. R-project. org.
-
(2010)
R: A Language and Environment For Statistical Computing
-
-
-
88
-
-
16344384719
-
Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the bilateria
-
Telford MJ, Wise MJ, Gowri-Shankar V (2005) Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the bilateria. Mol Biol Evol 22: 1129-1136.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1129-1136
-
-
Telford, M.J.1
Wise, M.J.2
Gowri-Shankar, V.3
-
89
-
-
0028874337
-
Neighbor-joining and maximum likelihood with RNA sequences: addressing the inter-dependence of sites
-
Tillier E, Collins R (1995) Neighbor-joining and maximum likelihood with RNA sequences: addressing the inter-dependence of sites. Mol Biol Evol 12: 7-15.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 7-15
-
-
Tillier, E.1
Collins, R.2
-
90
-
-
34347101234
-
Geschlechtschromosomen und Geschlechtsbestimmung bei einigen Calliphorinen (Calliphoridae, Diptera)
-
Ullerich FH (1963) Geschlechtschromosomen und Geschlechtsbestimmung bei einigen Calliphorinen (Calliphoridae, Diptera). Chromosoma 14: 45-110.
-
(1963)
Chromosoma
, vol.14
, pp. 45-110
-
-
Ullerich, F.H.1
-
91
-
-
0026557750
-
Functional analysis of internal transcribed spacer 2 of Saccharomyces cerevisiae ribosomal DNA
-
van der Sande CA, Kwa M, van Nues RW, van Heerikhuizen H, Raué HA, Planta RJ (1992) Functional analysis of internal transcribed spacer 2 of Saccharomyces cerevisiae ribosomal DNA. J Mol Biol 223: 899-910.
-
(1992)
J Mol Biol
, vol.223
, pp. 899-910
-
-
van der Sande, C.A.1
Kwa, M.2
van Nues, R.W.3
van Heerikhuizen, H.4
Raué, H.A.5
Planta, R.J.6
-
92
-
-
0019791882
-
The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript
-
Veldman GM, Klootwijk J, van Heerikhuizen H, Planta RJ (1981) The nucleotide sequence of the intergenic region between the 5. 8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5. 8S and 26S rRNA and the processing of the primary transcript. Nucleic Acids Res 9: 4847-4862.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 4847-4862
-
-
Veldman, G.M.1
Klootwijk, J.2
van Heerikhuizen, H.3
Planta, R.J.4
-
93
-
-
4344645239
-
Testing the utility of the internally transcribed spacer sequences in coral phylogenetics
-
Vollmer SV, Palumbi SR (2004) Testing the utility of the internally transcribed spacer sequences in coral phylogenetics. Mol Ecol 13(9): 2763-2772.
-
(2004)
Mol Ecol
, vol.13
, Issue.9
, pp. 2763-2772
-
-
Vollmer, S.V.1
Palumbi, S.R.2
-
94
-
-
0035882589
-
The utility of mitochondrial DNA sequences for the identification of forensically important blowflies (Diptera: Calliphoridae) in southeastern Australia
-
Wallman JF, Donnellan SC (2001) The utility of mitochondrial DNA sequences for the identification of forensically important blowflies (Diptera: Calliphoridae) in southeastern Australia. Forensic Sci Int 120: 60-67.
-
(2001)
Forensic Sci Int
, vol.120
, pp. 60-67
-
-
Wallman, J.F.1
Donnellan, S.C.2
-
95
-
-
0035882593
-
DNA-based identification of forensically important Chrysomyinae (Diptera: Calliphoridae)
-
Wells JD, Sperling FA (2001) DNA-based identification of forensically important Chrysomyinae (Diptera: Calliphoridae). Forensic Sci Int 120: 110-115.
-
(2001)
Forensic Sci Int
, vol.120
, pp. 110-115
-
-
Wells, J.D.1
Sperling, F.A.2
-
96
-
-
33845722147
-
Validation of a DNA-based method for identifying Chrysomyinae (Diptera: Calliphoridae) used in a death investigation
-
Wells JD, Williams DW (2007) Validation of a DNA-based method for identifying Chrysomyinae (Diptera: Calliphoridae) used in a death investigation. Int J Legal Med 121: 1-8.
-
(2007)
Int J Legal Med
, vol.121
, pp. 1-8
-
-
Wells, J.D.1
Williams, D.W.2
-
97
-
-
34249878716
-
Phylogenetic analysis of forensically important Lucilia flies based on cytochrome oxidase I sequence: a cautionary tale for forensic species determination
-
Wells JD, Wall R, Stevens JR (2007) Phylogenetic analysis of forensically important Lucilia flies based on cytochrome oxidase I sequence: a cautionary tale for forensic species determination. Int J Legal Med 121(3): 229-233.
-
(2007)
Int J Legal Med
, vol.121
, Issue.3
, pp. 229-233
-
-
Wells, J.D.1
Wall, R.2
Stevens, J.R.3
-
98
-
-
79954995188
-
Episodic radiations in the fly tree of life
-
Wiegmann BM, Trautwein MD, Winkler IS, Barr NB, Kim JW, Lambkin C, Bertone MA, Cassel BK, Bayless KM, Heimberg AM, Wheeler BM, Peterson KJ, Pape T, Sinclair BJ, Skevington JH, Blagoderov V, Caravas J, Kutty SN, Schmidt-Ott U, Kampmeier GE, Thompson FC, Grimaldi DA, Beckenbach AT, Courtney GC, Friedrich M, Meier R, Yeates DK (2011) Episodic radiations in the fly tree of life. Proc Natl Acad Sci USA 108(14): 5690-5695.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.14
, pp. 5690-5695
-
-
Wiegmann, B.M.1
Trautwein, M.D.2
Winkler, I.S.3
Barr, N.B.4
Kim, J.W.5
Lambkin, C.6
Bertone, M.A.7
Cassel, B.K.8
Bayless, K.M.9
Heimberg, A.M.10
Wheeler, B.M.11
Peterson, K.J.12
Pape, T.13
Sinclair, B.J.14
Skevington, J.H.15
Blagoderov, V.16
Caravas, J.17
Kutty, S.N.18
Schmidt-Ott, U.19
Kampmeier, G.E.20
Thompson, F.C.21
Grimaldi, D.A.22
Beckenbach, A.T.23
Courtney, G.C.24
Friedrich, M.25
Meier, R.26
Yeates, D.K.27
more..
-
99
-
-
76049119307
-
ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus)
-
Wiemers M, Keller A, Wolf M (2009) ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus). BMC Evol Biol 9: 300.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 300
-
-
Wiemers, M.1
Keller, A.2
Wolf, M.3
-
100
-
-
53849098418
-
ProfDistS: (profile-) distance based phylogeny on sequence-structure alignments
-
Wolf M, Ruderisch B, Dandekar T, Schultz J, Müller T (2008) ProfDistS: (profile-) distance based phylogeny on sequence-structure alignments. Bioinformatics 24: 2401-2402.
-
(2008)
Bioinformatics
, vol.24
, pp. 2401-2402
-
-
Wolf, M.1
Ruderisch, B.2
Dandekar, T.3
Schultz, J.4
Müller, T.5
-
101
-
-
78649661858
-
Assessing substitution saturation with DAMBE
-
2nd edn., P. Lemey, M. Salemi, and A.-M. Vandamme (Eds.), Cambridge: Cambridge University Press
-
Xia X, Lemey P (2009) Assessing substitution saturation with DAMBE. In: Lemey P, Salemi M, Vandamme A-M (eds) The phylogenetic handbook: a practical approach to DNA and protein phylogeny, 2nd edn. Cambridge University Press, Cambridge, pp 615-630.
-
(2009)
The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny
, pp. 615-630
-
-
Xia, X.1
Lemey, P.2
-
102
-
-
0034848170
-
DAMBE: software package for data analysis in molecular biology and evolution
-
Xia X, Xie Z (2001) DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92(4): 371-373.
-
(2001)
J Hered
, vol.92
, Issue.4
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
103
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
Xia T, SantaLucia J Jr, Burkard ME, Kierzek R, Schroeder SJ, Jiao X, Cox C, Turner DH (1998) Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry 37: 14719-14735.
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
Santalucia Jr., J.2
Burkard, M.E.3
Kierzek, R.4
Schroeder, S.J.5
Jiao, X.6
Cox, C.7
Turner, D.H.8
-
104
-
-
0037214757
-
An index of substitution saturation and its application
-
Xia X, Xie Z, Salemi M, Chen L, Wang Y (2003) An index of substitution saturation and its application. Mol Phylogenet Evol 26: 1-7.
-
(2003)
Mol Phylogenet Evol
, vol.26
, pp. 1-7
-
-
Xia, X.1
Xie, Z.2
Salemi, M.3
Chen, L.4
Wang, Y.5
-
105
-
-
34547749902
-
Fair-balance paradox, star-tree paradox and Bayesian phylogenetics
-
Yang Z (2007) Fair-balance paradox, star-tree paradox and Bayesian phylogenetics. Mol Biol Evol 24(8): 1639-1655.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1639-1655
-
-
Yang, Z.1
-
106
-
-
0345832215
-
The advantages of the ITS2 region of the nuclear rDNA cistron for analysis of phylogenetic relationships of insects: a Drosophila example
-
Young I, Coleman AW (2004) The advantages of the ITS2 region of the nuclear rDNA cistron for analysis of phylogenetic relationships of insects: a Drosophila example. Mol Phylogenet Evol 30: 236-242.
-
(2004)
Mol Phylogenet Evol
, vol.30
, pp. 236-242
-
-
Young, I.1
Coleman, A.W.2
-
107
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|