-
1
-
-
0035162672
-
ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins
-
Bakheet T., Frevel M., Williams B.R., Greer W., Khabar K.S. ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins. Nucleic Acids Res. 2001, 29:246-254.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 246-254
-
-
Bakheet, T.1
Frevel, M.2
Williams, B.R.3
Greer, W.4
Khabar, K.S.5
-
2
-
-
48249144806
-
A transcriptional enhancer from the coding region of ADAMTS5
-
Barthel K.K., Liu X. A transcriptional enhancer from the coding region of ADAMTS5. PLoS One 2008, 3:e2184.
-
(2008)
PLoS One
, vol.3
-
-
Barthel, K.K.1
Liu, X.2
-
3
-
-
0022914759
-
Compositional constraints and genome evolution
-
Bernardi G., Bernardi G. Compositional constraints and genome evolution. J. Mol. Evol. 1986, 24:1-11.
-
(1986)
J. Mol. Evol.
, vol.24
, pp. 1-11
-
-
Bernardi, G.1
Bernardi, G.2
-
4
-
-
0029587471
-
The human genome: organization and evolutionary history
-
Bernardi G. The human genome: organization and evolutionary history. Annu. Rev. Genet. 1995, 29:445-476.
-
(1995)
Annu. Rev. Genet.
, vol.29
, pp. 445-476
-
-
Bernardi, G.1
-
5
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi G. Isochores and the evolutionary genomics of vertebrates. Gene 2000, 241:3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
6
-
-
34347222211
-
The neoselectionist theory of genome evolution
-
Bernardi G. The neoselectionist theory of genome evolution. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:8385-8390.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 8385-8390
-
-
Bernardi, G.1
-
7
-
-
38849117246
-
RNA-protein interactions and control of mRNA stability in neurons
-
Bolognani F., Perrone-Bizzozero N.I. RNA-protein interactions and control of mRNA stability in neurons. J. Neurosci. Res. 2008, 86:481-489.
-
(2008)
J. Neurosci. Res.
, vol.86
, pp. 481-489
-
-
Bolognani, F.1
Perrone-Bizzozero, N.I.2
-
8
-
-
38549117309
-
The HGNC Database in 2008: a resource for the human genome
-
Bruford E.A., Lush M.J., Wright M.W., Sneddon T.P., Povey S., Birney E. The HGNC Database in 2008: a resource for the human genome. Nucleic Acids Res. 2008, 36:D445-D448.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Bruford, E.A.1
Lush, M.J.2
Wright, M.W.3
Sneddon, T.P.4
Povey, S.5
Birney, E.6
-
9
-
-
0034133037
-
RNA-protein interactions In the control of stability and localization of messenger RNA
-
Derrigo M., Cestelli A., Savettieri G., Di Liegro I. RNA-protein interactions In the control of stability and localization of messenger RNA. Int. J. Mol. Med. 2000, 5:111-123.
-
(2000)
Int. J. Mol. Med.
, vol.5
, pp. 111-123
-
-
Derrigo, M.1
Cestelli, A.2
Savettieri, G.3
Di Liegro, I.4
-
10
-
-
70350236484
-
Biased gene conversion and the evolution of mammalian genomic landscapes
-
Duret L., Galtier N. Biased gene conversion and the evolution of mammalian genomic landscapes. Annu. Rev. Genomics Hum. Genet. 2009, 10:285-311.
-
(2009)
Annu. Rev. Genomics Hum. Genet.
, vol.10
, pp. 285-311
-
-
Duret, L.1
Galtier, N.2
-
12
-
-
0035542550
-
Regulation of the initiation of eukaryotic transcription
-
Gill G. Regulation of the initiation of eukaryotic transcription. Essays Biochem. 2001, 37:33-43.
-
(2001)
Essays Biochem.
, vol.37
, pp. 33-43
-
-
Gill, G.1
-
13
-
-
0034730324
-
A mechanism for translationally coupled mRNA turnover - interaction between the poly(A) tail and a c-fos RNA coding determinant via a protein complex
-
Grosset C., Chen C.-Y.A., Xu N., Sonenberg N., Jacquemin-Sablon H., Shyu A.B. A mechanism for translationally coupled mRNA turnover - interaction between the poly(A) tail and a c-fos RNA coding determinant via a protein complex. Cell 2000, 103:29-40.
-
(2000)
Cell
, vol.103
, pp. 29-40
-
-
Grosset, C.1
Chen, C.-Y.A.2
Xu, N.3
Sonenberg, N.4
Jacquemin-Sablon, H.5
Shyu, A.B.6
-
14
-
-
77956194960
-
Methylation of the tumor suppressor protein, BRCA1, influences its transcriptional cofactor function
-
Guendel I., et al. Methylation of the tumor suppressor protein, BRCA1, influences its transcriptional cofactor function. PLoS One 2010, 5:e11379.
-
(2010)
PLoS One
, vol.5
-
-
Guendel, I.1
-
15
-
-
78751477191
-
Gene silencing by microRNAs: contributions of translational repression and mRNA decay
-
Huntzinger E., Izzaurralde E. Gene silencing by microRNAs: contributions of translational repression and mRNA decay. Nat. Rev. Genet. 2011, 12:99-110.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 99-110
-
-
Huntzinger, E.1
Izzaurralde, E.2
-
16
-
-
78650350858
-
Position weight matrix model as a tool for the study of regulatory elements distribution across the DNA sequence
-
Jaksik R., Rzeszowska-Wolny J. Position weight matrix model as a tool for the study of regulatory elements distribution across the DNA sequence. Arch. Control Sci. 2010, 20:491-501.
-
(2010)
Arch. Control Sci.
, vol.20
, pp. 491-501
-
-
Jaksik, R.1
Rzeszowska-Wolny, J.2
-
17
-
-
22744434724
-
Human microRNA targets
-
John B., Enright A.J., Aravin A., Tuschl T., Sander C., Marks D.S. Human microRNA targets. PLoS Biol. 2005, 2:e363.
-
(2005)
PLoS Biol.
, vol.2
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
18
-
-
0025313584
-
Too many transcription factors: positive and negative interactions
-
Karin M. Too many transcription factors: positive and negative interactions. New Biol. 1990, 2:126-131.
-
(1990)
New Biol.
, vol.2
, pp. 126-131
-
-
Karin, M.1
-
19
-
-
33750831582
-
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
-
Kohany O., Gentles A.J., Hankus L., Jurka J. Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinforma. 2006, 7:424.
-
(2006)
BMC Bioinforma.
, vol.7
, pp. 424
-
-
Kohany, O.1
Gentles, A.J.2
Hankus, L.3
Jurka, J.4
-
20
-
-
0028089754
-
AUUUA is not sufficient to promote poly(A) shortening and degradation of an mRNA: the functional sequence within AU-rich elements may be UUAUUUA(U/A)(U/A)
-
Lagnado C.A., Brown C.Y., Goodall G.J. AUUUA is not sufficient to promote poly(A) shortening and degradation of an mRNA: the functional sequence within AU-rich elements may be UUAUUUA(U/A)(U/A). Mol. Cell. Biol. 1994, 14:7984-7995.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 7984-7995
-
-
Lagnado, C.A.1
Brown, C.Y.2
Goodall, G.J.3
-
21
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander E.S., et al. Initial sequencing and analysis of the human genome. Nature 2001, 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
-
22
-
-
0031432471
-
Transcription factors: an overview
-
Latchman D.S. Transcription factors: an overview. Int. J. Biochem. Cell Biol. 1997, 29:1305-1312.
-
(1997)
Int. J. Biochem. Cell Biol.
, vol.29
, pp. 1305-1312
-
-
Latchman, D.S.1
-
23
-
-
0034507632
-
Transcription of eukaryotic protein-coding genes
-
Lee T.I., Young R.A. Transcription of eukaryotic protein-coding genes. Annu. Rev. Genet. 2000, 34:77-137.
-
(2000)
Annu. Rev. Genet.
, vol.34
, pp. 77-137
-
-
Lee, T.I.1
Young, R.A.2
-
24
-
-
0037819447
-
Transcription regulation and animal diversity
-
Levine M., Tjian R. Transcription regulation and animal diversity. Nature 2003, 424:147-151.
-
(2003)
Nature
, vol.424
, pp. 147-151
-
-
Levine, M.1
Tjian, R.2
-
25
-
-
22144478256
-
MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
-
Liu J., Valencia-Sanchez M.A., Hannon G.J., Parker R. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nat. Cell Biol. 2005, 7:719-723.
-
(2005)
Nat. Cell Biol.
, vol.7
, pp. 719-723
-
-
Liu, J.1
Valencia-Sanchez, M.A.2
Hannon, G.J.3
Parker, R.4
-
26
-
-
0031737389
-
The recent origins of spliceosomal introns revisited
-
Logsdon J.M. The recent origins of spliceosomal introns revisited. Curr. Opin. Genet. Dev. 1998, 8:637-648.
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 637-648
-
-
Logsdon, J.M.1
-
27
-
-
0029115626
-
Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory
-
Logsdon J.M., Tyshenko M.G., Dixon C., D-Jafari J., Walker V.K., Palmer J.D. Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory. Proc. Natl. Acad. Sci. U. S. A. 1995, 92:8507-8511.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 8507-8511
-
-
Logsdon, J.M.1
Tyshenko, M.G.2
Dixon, C.3
D-Jafari, J.4
Walker, V.K.5
Palmer, J.D.6
-
28
-
-
10744222156
-
Identification and characterization of multi-species conserved sequences
-
Margulies E.H., Blanchette M., Haussler D., Green E.D. Identification and characterization of multi-species conserved sequences. Genome Res. 2003, 13:2507-2518.
-
(2003)
Genome Res.
, vol.13
, pp. 2507-2518
-
-
Margulies, E.H.1
Blanchette, M.2
Haussler, D.3
Green, E.D.4
-
29
-
-
0029041327
-
Cytoplasmic mRNA-protein interactions in eukaryotic gene expression
-
McCarthy J.E., Kollmus H. Cytoplasmic mRNA-protein interactions in eukaryotic gene expression. Trends Biochem. Sci. 1995, 20:191-197.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 191-197
-
-
McCarthy, J.E.1
Kollmus, H.2
-
31
-
-
0027728314
-
DNA sequence requirement of a TATA element-binding protein from Arabidopsis for transcription in vitro
-
Mukumoto F., Hirose S., Imaseki H., Yamazaki K. DNA sequence requirement of a TATA element-binding protein from Arabidopsis for transcription in vitro. Plant Mol. Biol. 1993, 23:995-1003.
-
(1993)
Plant Mol. Biol.
, vol.23
, pp. 995-1003
-
-
Mukumoto, F.1
Hirose, S.2
Imaseki, H.3
Yamazaki, K.4
-
32
-
-
0037154963
-
Cooperation between complexes that regulate chromatin structure and transcription
-
Narlikar G.J., Fan H.Y., Kingston R.E. Cooperation between complexes that regulate chromatin structure and transcription. Cell 2002, 108:475-487.
-
(2002)
Cell
, vol.108
, pp. 475-487
-
-
Narlikar, G.J.1
Fan, H.Y.2
Kingston, R.E.3
-
33
-
-
0031022752
-
RNA polymerase II transcription initiation: a structural view
-
Nikolov D.B., Burley S.K. RNA polymerase II transcription initiation: a structural view. Proc. Natl. Acad. Sci. U. S. A. 1997, 94:15-22.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 15-22
-
-
Nikolov, D.B.1
Burley, S.K.2
-
35
-
-
0035932978
-
Direct DNA binding by Brca1
-
Paull T.T., Cortez D., Bowers B., Elledge S.J., Gellert M. Direct DNA binding by Brca1. Proc. Natl. Acad. Sci. U. S. A. 2001, 98:6086-6091.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 6086-6091
-
-
Paull, T.T.1
Cortez, D.2
Bowers, B.3
Elledge, S.J.4
Gellert, M.5
-
36
-
-
0029918710
-
Functional characterization of a non-AUUUA AU-rich element from the c-jun proto-oncogene mRNA: evidence for a novel class of AU-rich elements
-
Peng S.S., Chen C.Y., Shyu A.B. Functional characterization of a non-AUUUA AU-rich element from the c-jun proto-oncogene mRNA: evidence for a novel class of AU-rich elements. Mol. Cell. Biol. 1996, 16:1490-1499.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 1490-1499
-
-
Peng, S.S.1
Chen, C.Y.2
Shyu, A.B.3
-
37
-
-
0030249381
-
The role of general initiation factors in transcription by RNA polymerase II
-
Roeder R.G. The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 1996, 21:327-335.
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 327-335
-
-
Roeder, R.G.1
-
38
-
-
0347125328
-
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
-
Sandelin A., Alkema W., Engstrom P., Wasserman W.W., Lenhard B. JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res. 2004, 32:D91-D94.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Sandelin, A.1
Alkema, W.2
Engstrom, P.3
Wasserman, W.W.4
Lenhard, B.5
-
39
-
-
3242891274
-
ConSite: web based prediction of regulatory elements using cross-species comparison
-
Sandelin A., Wasserman W., Lenhard B. ConSite: web based prediction of regulatory elements using cross-species comparison. Nucleic Acids Res. 2004, 32:W249-W252.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Sandelin, A.1
Wasserman, W.2
Lenhard, B.3
-
41
-
-
0037684805
-
The multiple nuclear functions of BRCA1: transcription, ubiquitination and DNA repair
-
Starita L.M., Parvin J.D. The multiple nuclear functions of BRCA1: transcription, ubiquitination and DNA repair. Curr. Opin. Cell Biol. 2003, 15:345-350.
-
(2003)
Curr. Opin. Cell Biol.
, vol.15
, pp. 345-350
-
-
Starita, L.M.1
Parvin, J.D.2
-
42
-
-
0028043139
-
Testing the exon theory of genes: the evidence from protein structure
-
Stoltzfus A., Spencer D.F., Zuker M., Logsdon J.M., Doolittle W.F. Testing the exon theory of genes: the evidence from protein structure. Science 1994, 265:202-207.
-
(1994)
Science
, vol.265
, pp. 202-207
-
-
Stoltzfus, A.1
Spencer, D.F.2
Zuker, M.3
Logsdon, J.M.4
Doolittle, W.F.5
-
44
-
-
27744469993
-
Dualism of gene GC content and CpG pattern in regard to expression in the human genome: magnitude versus breadth
-
Vinogradov A.E. Dualism of gene GC content and CpG pattern in regard to expression in the human genome: magnitude versus breadth. Trends Genet. 2005, 21:639-643.
-
(2005)
Trends Genet.
, vol.21
, pp. 639-643
-
-
Vinogradov, A.E.1
-
46
-
-
0028365899
-
TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs
-
Wong J.M., Bateman E. TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs. Nucleic Acids Res. 1994, 22:1890-1896.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1890-1896
-
-
Wong, J.M.1
Bateman, E.2
-
47
-
-
0033119162
-
Coactivator and corepressor complexes in nuclear receptor function
-
Xu L., Glass C.K., Rosenfeld M.G. Coactivator and corepressor complexes in nuclear receptor function. Curr. Opin. Genet. Dev. 1999, 9:140-147.
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 140-147
-
-
Xu, L.1
Glass, C.K.2
Rosenfeld, M.G.3
-
48
-
-
19344368143
-
Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity
-
Yamashita R., Suzuki Y., Sugano S., Nakai K. Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity. Gene 2005, 350:129-136.
-
(2005)
Gene
, vol.350
, pp. 129-136
-
-
Yamashita, R.1
Suzuki, Y.2
Sugano, S.3
Nakai, K.4
|