메뉴 건너뛰기




Volumn 7, Issue 1, 2012, Pages 20-33

Genome-wide analysis of DNA methylation and the gene expression change in lung cancer

Author keywords

DNA methylation; Lung cancer; Microarray; Pyrosequencing

Indexed keywords

CCDC37 PROTEIN; CDO1 PROTEIN; CYTL1 PROTEIN; LMO3 PROTEIN; PROTEIN; SERPINB5 PROTEIN; SLIT2 PROTEIN; UNCLASSIFIED DRUG;

EID: 84655166524     PISSN: 15560864     EISSN: 15561380     Source Type: Journal    
DOI: 10.1097/JTO.0b013e3182307f62     Document Type: Article
Times cited : (80)

References (50)
  • 1
    • 44249086425 scopus 로고    scopus 로고
    • Non-small cell lung cancer: Epidemiology, risk factors, treatment, and survivorship
    • DOI 10.4065/83.5.584
    • Molina JR, Yang P, Cassivi SD, et al. Non-small cell lung cancer: epidemiology, risk factors, treatment, and survivorship. Mayo Clin Proc 2008;83:584-594. (Pubitemid 351720831)
    • (2008) Mayo Clinic Proceedings , vol.83 , Issue.5 , pp. 584-594
    • Molina, J.R.1    Yang, P.2    Cassivi, S.D.3    Schild, S.E.4    Adjei, A.A.5
  • 2
    • 0032732788 scopus 로고    scopus 로고
    • Relationships between chromatin organization and DNA methylation in determining gene expression
    • DOI 10.1006/scbi.1999.0134
    • Jones PL, Wolffe AP. Relationships between chromatin organization and DNA methylation in determining gene expression. Semin Cancer Biol 1999;9:339-347. (Pubitemid 29532860)
    • (1999) Seminars in Cancer Biology , vol.9 , Issue.5 , pp. 339-347
    • Jones, P.L.1    Wolffe, A.P.2
  • 3
    • 0032948005 scopus 로고    scopus 로고
    • Synergy of demethylation and histone deacetylase inhibition in the re- expression of genes silenced in cancer
    • DOI 10.1038/5047
    • Cameron EE, Bachman KE, Myohanen S, et al. Synergy of demethylation and histone deacetylase inhibition in the re-expression of genes silenced in cancer. Nat Genet 1999;21:103-107. (Pubitemid 29036293)
    • (1999) Nature Genetics , vol.21 , Issue.1 , pp. 103-107
    • Cameron, E.E.1    Bachman, K.E.2    Myohanen, S.3    Herman, J.G.4    Baylin, S.B.5
  • 4
    • 65349187055 scopus 로고    scopus 로고
    • Cancer epigenomics: Implications of DNA methylation in personalized cancer therapy
    • Toyota M, Suzuki H, Yamashita T, et al. Cancer epigenomics: implications of DNA methylation in personalized cancer therapy. Cancer Sci 2009;100:787-791.
    • (2009) Cancer Sci. , vol.100 , pp. 787-791
    • Toyota, M.1    Suzuki, H.2    Yamashita, T.3
  • 5
    • 0034626988 scopus 로고    scopus 로고
    • Inactivation of the DNA-repair gene MGMT and the clinical response of gliomas to alkylating agents
    • Esteller M, Garcia-Foncillas J, Andion E, et al. Inactivation of the DNA-repair gene MGMT and the clinical response of gliomas to alkylating agents. N Engl J Med 2000;343:1350-1354.
    • (2000) N. Engl. J. Med. , vol.343 , pp. 1350-1354
    • Esteller, M.1    Garcia-Foncillas, J.2    Andion, E.3
  • 9
    • 77950409567 scopus 로고    scopus 로고
    • Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing
    • Ruike Y, Imanaka Y, Sato F, et al. Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing. BMC Genomics 2010;11:137.
    • (2010) BMC Genomics , vol.11 , pp. 137
    • Ruike, Y.1    Imanaka, Y.2    Sato, F.3
  • 10
    • 75549089556 scopus 로고    scopus 로고
    • Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer
    • Cheung HH, Lee TL, Davis AJ, et al. Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer. Br J Cancer 2010;102:419-427.
    • (2010) Br. J. Cancer , vol.102 , pp. 419-427
    • Cheung, H.H.1    Lee, T.L.2    Davis, A.J.3
  • 12
    • 79953062931 scopus 로고    scopus 로고
    • Genome-wide methylation analysis identifies epigenetically inactivated candidate tumour suppressor genes in renal cell carcinoma
    • Morris MR, Ricketts CJ, Gentle D, et al. Genome-wide methylation analysis identifies epigenetically inactivated candidate tumour suppressor genes in renal cell carcinoma. Oncogene 2011;30:1390-1401.
    • (2011) Oncogene , vol.30 , pp. 1390-1401
    • Morris, M.R.1    Ricketts, C.J.2    Gentle, D.3
  • 13
    • 77952499379 scopus 로고    scopus 로고
    • Multi-platform whole-genome microarray analyses refine the epigenetic signature of breast cancer metastasis with gene expression and copy number
    • Andrews J, Kennette W, Pilon J, et al. Multi-platform whole-genome microarray analyses refine the epigenetic signature of breast cancer metastasis with gene expression and copy number. PLoS One 2010;5: e8665.
    • (2010) PLoS One , vol.5
    • Andrews, J.1    Kennette, W.2    Pilon, J.3
  • 14
    • 33748055105 scopus 로고    scopus 로고
    • MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells
    • DOI 10.1158/0008-5472.CAN-06-1888
    • Rauch T, Li H, Wu X, et al. MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells. Cancer Res 2006;66:7939-7947. (Pubitemid 44299157)
    • (2006) Cancer Research , vol.66 , Issue.16 , pp. 7939-7947
    • Rauch, T.1    Li, H.2    Wu, X.3    Pfeifer, G.P.4
  • 16
    • 10644222635 scopus 로고    scopus 로고
    • MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex
    • DOI 10.1074/jbc.M409149200
    • Jiang CL, Jin SG, Pfeifer GP. MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex. J Biol Chem 2004;279:52456-52464. (Pubitemid 39656621)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.50 , pp. 52456-52464
    • Jiang, C.-L.1    Jin, S.-G.2    Pfeifer, G.P.3
  • 19
    • 0142228320 scopus 로고    scopus 로고
    • Tobacco carcinogens, their biomarkers and tobacco-induced cancer
    • Hecht SS. Tobacco carcinogens, their biomarkers and tobacco-induced cancer. Nat Rev Cancer 2003;3:733-744. (Pubitemid 37328812)
    • (2003) Nature Reviews Cancer , vol.3 , Issue.10 , pp. 733-744
    • Hecht, S.S.1
  • 20
    • 58849091905 scopus 로고    scopus 로고
    • A human B cell methylome at 100-base pair resolution
    • USA
    • Rauch TA, Wu X, Zhong X, et al. A human B cell methylome at 100-base pair resolution. Proc Natl Acad Sci USA 2009;106:671-678.
    • (2009) Proc. Natl. Acad. Sci. , vol.106 , pp. 671-678
    • Rauch, T.A.1    Wu, X.2    Zhong, X.3
  • 21
    • 48249117114 scopus 로고    scopus 로고
    • DLEC1 and MLH1 promoter methylation are associated with poor prognosis in non-small cell lung carcinoma
    • Seng TJ, Currey N, Cooper WA, et al. DLEC1 and MLH1 promoter methylation are associated with poor prognosis in non-small cell lung carcinoma. Br J Cancer 2008;99:375-382.
    • (2008) Br. J. Cancer , vol.99 , pp. 375-382
    • Seng, T.J.1    Currey, N.2    Cooper, W.A.3
  • 23
    • 0028932663 scopus 로고
    • CpG methylation has differential effects on the binding of YY1 and ETS proteins to the bi-directional promoter of the Surf-1 and Surf-2 genes
    • Gaston K, Fried M. CpG methylation has differential effects on the binding of YY1 and ETS proteins to the bi-directional promoter of the Surf-1 and Surf-2 genes. Nucleic Acids Res 1995;23:901-909.
    • (1995) Nucleic. Acids Res. , vol.23 , pp. 901-909
    • Gaston, K.1    Fried, M.2
  • 24
    • 67650925025 scopus 로고    scopus 로고
    • Epigenetic regulation of HIV-1 latency by cytosine methylation
    • Kauder SE, Bosque A, Lindqvist A, et al. Epigenetic regulation of HIV-1 latency by cytosine methylation. PLoS Pathog 2009;5: e1000495.
    • (2009) PLoS Pathog. , vol.5
    • Kauder, S.E.1    Bosque, A.2    Lindqvist, A.3
  • 25
    • 66349104315 scopus 로고    scopus 로고
    • Histone deacetylase inhibitor induction of P-glycoprotein transcription requires both histone deacetylase 1 dissociation and recruitment of CAAT/enhancer binding protein beta and pCAF to the promoter region
    • Kim SN, Kim NH, Lee W, et al. Histone deacetylase inhibitor induction of P-glycoprotein transcription requires both histone deacetylase 1 dissociation and recruitment of CAAT/enhancer binding protein beta and pCAF to the promoter region. Mol Cancer Res 2009;7:735-744.
    • (2009) Mol. Cancer Res. , vol.7 , pp. 735-744
    • Kim, S.N.1    Kim, N.H.2    Lee, W.3
  • 26
    • 32444434989 scopus 로고    scopus 로고
    • Histone H4-K16 acetylation controls chromatin structure and protein interactions
    • DOI 10.1126/science.1124000
    • Shogren-Knaak M, Ishii H, Sun JM, et al. Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science 2006;311: 844-847. (Pubitemid 43228847)
    • (2006) Science , vol.311 , Issue.5762 , pp. 844-847
    • Shogren-Knaak, M.1    Ishii, H.2    Sun, J.-M.3    Pazin, M.J.4    Davie, J.R.5    Peterson, C.L.6
  • 27
    • 0029985730 scopus 로고    scopus 로고
    • Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro
    • Vettese-Dadey M, Grant PA, Hebbes TR, et al. Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro. EMBO J 1996;15:2508-2518. (Pubitemid 26151190)
    • (1996) EMBO Journal , vol.15 , Issue.10 , pp. 2508-2518
    • Vettese-Dadey, M.1    Grant, P.A.2    Hebbes, T.R.3    Crane-Robinson, C.4    Allis, C.D.5    Workman, J.L.6
  • 29
    • 1042278765 scopus 로고    scopus 로고
    • The history of cancer epigenetics
    • Feinberg AP, Tycko B. The history of cancer epigenetics. Nat Rev Cancer 2004;4:143-153. (Pubitemid 38198742)
    • (2004) Nature Reviews Cancer , vol.4 , Issue.2 , pp. 143-153
    • Feinberg, A.P.1    Tycko, B.2
  • 31
    • 33947629246 scopus 로고    scopus 로고
    • Aberrant DNA methylation of OLIG1 a novel prognostic factor in non-small cell lung cancer
    • Brena RM, Morrison C, Liyanarachchi S, et al. Aberrant DNA methylation of OLIG1, a novel prognostic factor in non-small cell lung cancer. PLoS Med 2007;4:e108.
    • (2007) PLoS Med. , vol.4
    • Brena, R.M.1    Morrison, C.2    Liyanarachchi, S.3
  • 32
    • 33845926895 scopus 로고    scopus 로고
    • A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies
    • Shames DS, Girard L, Gao B, et al. A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies. PLoS Med 2006;3:e486.
    • (2006) PLoS Med. , vol.3
    • Shames, D.S.1    Girard, L.2    Gao, B.3
  • 34
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • DOI 10.1038/ng1598
    • Weber M, Davies JJ, Wittig D, et al. Chromosome-wide and promoter- specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet 2005;37:853-862. (Pubitemid 41077111)
    • (2005) Nature Genetics , vol.37 , Issue.8 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6    Schubeler, D.7
  • 35
    • 70349332929 scopus 로고    scopus 로고
    • Isolating bronchial epithelial cell preparations from gross lung specimens
    • Kwon YJ, Lee SJ, Koh JS, et al. Isolating bronchial epithelial cell preparations from gross lung specimens. In Vitro Cell Dev Biol Anim 2009;45:496-499.
    • (2009) Vitro Cell. Dev. Biol. Anim. , vol.45 , pp. 496-499
    • Kwon, Y.J.1    Lee, S.J.2    Koh, J.S.3
  • 37
    • 76349089965 scopus 로고    scopus 로고
    • LMO3 interacts with p53 and inhibits its transcriptional activity
    • Larsen S, Yokochi T, Isogai E, et al. LMO3 interacts with p53 and inhibits its transcriptional activity. Biochem Biophys Res Commun 2010; 392:252-257.
    • (2010) Biochem. Biophys. Res. Commun. , vol.392 , pp. 252-257
    • Larsen, S.1    Yokochi, T.2    Isogai, E.3
  • 39
    • 79951486111 scopus 로고    scopus 로고
    • Maspin suppresses survival of lung cancer cells through modulation of akt pathway
    • Nam E, Park C. Maspin suppresses survival of lung cancer cells through modulation of akt pathway. Cancer Res Treat 2010;42:42-47.
    • (2010) Cancer Res. Treat. , vol.42 , pp. 42-47
    • Nam, E.1    Park, C.2
  • 40
    • 67849109939 scopus 로고    scopus 로고
    • CpG island methylation profiling in human melanoma cell lines
    • Tellez CS, Shen L, Estecio MR, et al. CpG island methylation profiling in human melanoma cell lines. Melanoma Res 2009;19: 146-155.
    • (2009) Melanoma Res. , vol.19 , pp. 146-155
    • Tellez, C.S.1    Shen, L.2    Estecio, M.R.3
  • 41
    • 77953518538 scopus 로고    scopus 로고
    • The natural tumor suppressor protein maspin and potential application in non small cell lung cancer
    • Lonardo F, Li X, Kaplun A, et al. The natural tumor suppressor protein maspin and potential application in non small cell lung cancer. Curr Pharm Des 2010;16:1877-1881.
    • (2010) Curr. Pharm. Des. , vol.16 , pp. 1877-1881
    • Lonardo, F.1    Li, X.2    Kaplun, A.3
  • 42
    • 0043170818 scopus 로고    scopus 로고
    • Frequent epigenetic inactivation of the SLIT2 gene in gliomas
    • DOI 10.1038/sj.onc.1206687
    • Dallol A, Krex D, Hesson L, et al. Frequent epigenetic inactivation of the SLIT2 gene in gliomas. Oncogene 2003;22:4611-4616. (Pubitemid 36920705)
    • (2003) Oncogene , vol.22 , Issue.29 , pp. 4611-4616
    • Dallol, A.1    Krex, D.2    Hesson, L.3    Eng, C.4    Maher, E.R.5    Latif, F.6
  • 43
    • 0037374598 scopus 로고    scopus 로고
    • SLIT2 axon guidance molecule is frequently inactivated in colorectal cancer and suppresses growth of colorectal carcinoma cells
    • Dallol A, Morton D, Maher ER, et al. SLIT2 axon guidance molecule is frequently inactivated in colorectal cancer and suppresses growth of colorectal carcinoma cells. Cancer Res 2003;63:1054-1058. (Pubitemid 36278438)
    • (2003) Cancer Research , vol.63 , Issue.5 , pp. 1054-1058
    • Dallol, A.1    Morton, D.2    Maher, E.R.3    Latif, F.4
  • 44
    • 0037108922 scopus 로고    scopus 로고
    • SLIT2, a human homologue of the Drosophila Slit2 gene, has tumor suppressor activity and is frequently inactivated in lung and breast cancers
    • Dallol A, Da Silva NF, Viacava P, et al. SLIT2, a human homologue of the Drosophila Slit2 gene has tumor suppressor activity and is frequently inactivated in lung and breast cancers. Cancer Res 2002;62:5874-5880. (Pubitemid 35204748)
    • (2002) Cancer Research , vol.62 , Issue.20 , pp. 5874-5880
    • Dallol, A.1    Da Silva, N.F.2    Viacava, P.3    Minna, J.D.4    Bieche, I.5    Maher, E.R.6    Latif, F.7
  • 45
    • 69949088319 scopus 로고    scopus 로고
    • Frequent epigenetic inactivation of the SLIT2 gene in chronic and acute lymphocytic leukemia
    • Dunwell TL, Dickinson RE, Stankovic T, et al. Frequent epigenetic inactivation of the SLIT2 gene in chronic and acute lymphocytic leukemia. Epigenetics 2009;4:265-269.
    • (2009) Epigenetics , vol.4 , pp. 265-269
    • Dunwell, T.L.1    Dickinson, R.E.2    Stankovic, T.3
  • 46
    • 58149299644 scopus 로고    scopus 로고
    • Epigenetic inactivation of SLIT2 in human hepatocellular carcinomas
    • Jin J, You H, Yu B, et al. Epigenetic inactivation of SLIT2 in human hepatocellular carcinomas. Biochem Biophys Res Commun 2009;379: 86-91.
    • (2009) Biochem. Biophys. Res. Commun. , vol.379 , pp. 86-91
    • Jin, J.1    You, H.2    Yu, B.3
  • 47
    • 76549117409 scopus 로고    scopus 로고
    • SLIT2 attenuation during lung cancer progression deregulates beta-catenin and E-cadherin and associates with poor prognosis
    • Tseng RC, Lee SH, Hsu HS, et al. SLIT2 attenuation during lung cancer progression deregulates beta-catenin and E-cadherin and associates with poor prognosis. Cancer Res 2010;70:543-551.
    • (2010) Cancer Res. , vol.70 , pp. 543-551
    • Tseng, R.C.1    Lee, S.H.2    Hsu, H.S.3
  • 49
    • 77952804730 scopus 로고    scopus 로고
    • CDO1 promoter methylation is a biomarker for outcome prediction of anthracycline treated estrogen receptor-positive lymph node-positive breast cancer patients
    • Dietrich D, Krispin M, Dietrich J, et al. CDO1 promoter methylation is a biomarker for outcome prediction of anthracycline treated, estrogen receptor-positive, lymph node-positive breast cancer patients. BMC Cancer 2010;10:247.
    • (2010) BMC Cancer , vol.10 , pp. 247
    • Dietrich, D.1    Krispin, M.2    Dietrich, J.3
  • 50
    • 35748964419 scopus 로고    scopus 로고
    • Cytokine-like 1 Cytl1 regulates the chondrogenesis of mesenchymal cells
    • Kim JS, Ryoo ZY, Chun JS. Cytokine-like 1 (Cytl1) regulates the chondrogenesis of mesenchymal cells. J Biol Chem 2007;282:29359-29367
    • (2007) J. Biol. Chem. , vol.282 , pp. 29359-29367
    • Kim, J.S.1    Ryoo, Z.Y.2    Chun, J.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.