-
1
-
-
33644863777
-
Affinity selection of DNA-binding protein complexes using mRNA display
-
Tateyama, S., et al., Affinity selection of DNA-binding protein complexes using mRNA display. Nucleic Acids. Res. 34, e27 (2006).
-
(2006)
Nucleic Acids. Res
, vol.e27
, pp. 34
-
-
Tateyama, S.1
-
2
-
-
78651069641
-
Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry
-
Schilling, O., Huesgen, P. F., Barré, O., Auf dem Keller, U., Overall, C. M., Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry. Nat. Protoc. 6, 111-120 (2011).
-
(2011)
Nat. Protoc
, vol.6
, pp. 111-120
-
-
Schilling, O.1
Huesgen, P.F.2
Barré, O.3
Auf Dem Keller, U.4
Overall, C.M.5
-
3
-
-
0038333588
-
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
-
Gevaert, K., et al., Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat. Biotechnol. 21, 566-569 (2003).
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 566-569
-
-
Gevaert, K.1
-
4
-
-
0032561365
-
Identification of apoptosis-associated proteins in a human Burkitt lymphoma cell line. Cleavage of heterogeneous nuclear ribonucleoprotein A1 by caspase 3
-
Brockstedt, E., et al., Identification of apoptosis-associated proteins in a human Burkitt lymphoma cell line. Cleavage of heterogeneous nuclear ribonucleoprotein A1 by caspase 3. J. Biol. Chem. 273, 28057-28064 (1998).
-
(1998)
J. Biol. Chem
, vol.273
, pp. 28057-28064
-
-
Brockstedt, E.1
-
5
-
-
0024406857
-
Novel genetic system to detect protein-protein interactions
-
Fields, S., Song, O. A., novel genetic system to detect protein-protein interactions. Nature 340, 245-246 (1989).
-
(1989)
Nature
, vol.340
, pp. 245-246
-
-
Fields, S.1
Song, O.A.2
-
6
-
-
0028985657
-
The yeast two-hybrid system for studying protein-protein interactions
-
Luban, J., Goff, S. P., The yeast two-hybrid system for studying protein-protein interactions. Curr. Opin. Biotechnol. 6, 59-64 (1995).
-
(1995)
Curr. Opin. Biotechnol
, vol.6
, pp. 59-64
-
-
Luban, J.1
Goff, S.P.2
-
7
-
-
3242718015
-
Using the yeast two-hybrid system to identify interacting proteins
-
Miller, J., Stagljar, I., Using the yeast two-hybrid system to identify interacting proteins. Methods Mol. Biol. 261, 247-262 (2004).
-
(2004)
Methods Mol. Biol
, vol.261
, pp. 247-262
-
-
Miller, J.1
Stagljar, I.2
-
8
-
-
0037011406
-
-
Screening and selection methods for large-scale analysis of protein function
-
Lin, H., Cornish, V. W., Screening and selection methods for large-scale analysis of protein function. Angew. Chem. Int. Ed. Engl. 41, 4402-4425 (2002).
-
(2002)
Angew. Chem. Int. Ed. Engl
, vol.41
, pp. 4402-4425
-
-
Lin, H.1
Cornish, V.W.2
-
9
-
-
0021818675
-
Filamentous fusion phage: Novel expression vectors that display cloned antigens on the virion surface
-
Smith, G. P., Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science 228, 1315-1317 (1985).
-
(1985)
Science
, vol.228
, pp. 1315-1317
-
-
Smith, G.P.1
-
10
-
-
0024210147
-
Antibody-selectable filamentous fd phage vectors: Affinity purification of target genes
-
Parmley, S. F., Smith, G. P., Antibody-selectable filamentous fd phage vectors: affinity purification of target genes. Gene 73, 305-318 (1988).
-
(1988)
Gene
, vol.73
, pp. 305-318
-
-
Parmley, S.F.1
Smith, G.P.2
-
11
-
-
0027266779
-
Libraries of peptides and proteins displayed on filamentous phage
-
Smith, G. P., Scott, J. K., Libraries of peptides and proteins displayed on filamentous phage. Meth. Enzymol. 217, 228-257 (1993).
-
(1993)
Meth. Enzymol
, vol.217
, pp. 228-257
-
-
Smith, G.P.1
Scott, J.K.2
-
12
-
-
15344339459
-
Considerations on antibody-phage display methodology. Comb
-
Conrad, U., Scheller, J., Considerations on antibody-phage display methodology. Comb. Chem. High Throughput Screen 8, 117-126 (2005).
-
(2005)
Chem. High Throughput Screen
, vol.8
, pp. 117-126
-
-
Conrad, U.1
Scheller, J.2
-
13
-
-
27544483522
-
Directed evolution for the development of conformation-specific affinity reagents using yeast display
-
Weaver-Feldhaus, J. M., Miller, K. D., Feldhaus, M. J., Siegel, R. W., Directed evolution for the development of conformation-specific affinity reagents using yeast display. Protein Eng. Des. Sel. 18, 527-536 (2005).
-
(2005)
Protein Eng. Des. Sel
, vol.18
, pp. 527-536
-
-
Weaver-Feldhaus, J.M.1
Miller, K.D.2
Feldhaus, M.J.3
Siegel, R.W.4
-
14
-
-
34547574021
-
High-efficiency recovery of target cells using improved yeast display system for detection of protein-protein interactions
-
Fukuda, N., et al., High-efficiency recovery of target cells using improved yeast display system for detection of protein-protein interactions. Appl. Microbiol. Biotechnol. 76, 151-158 (2007).
-
(2007)
Appl. Microbiol. Biotechnol
, vol.76
, pp. 151-158
-
-
Fukuda, N.1
-
15
-
-
34548262832
-
Binding and enrichment of Escherichia coli spheroplasts expressing inner membrane tethered scFv antibodies on surface immobilized antigens
-
Jung, S. T., Jeong, K. J., Iverson, B. L., Georgiou, G., Binding and enrichment of Escherichia coli spheroplasts expressing inner membrane tethered scFv antibodies on surface immobilized antigens. Biotechnol. Bioeng. 98, 39-47 (2007).
-
(2007)
Biotechnol. Bioeng
, vol.98
, pp. 39-47
-
-
Jung, S.T.1
Jeong, K.J.2
Iverson, B.L.3
Georgiou, G.4
-
16
-
-
0028592703
-
An in vitro polysome display system for identifying ligands from very large peptide libraries
-
Mattheakis, L. C., Bhatt, R. R., Dower, W. J., An in vitro polysome display system for identifying ligands from very large peptide libraries. Proc. Natl. Acad. Sci. USA 91, 9022-9026 (1994).
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 9022-9026
-
-
Mattheakis, L.C.1
Bhatt, R.R.2
Dower, W.J.3
-
17
-
-
0030974119
-
Vitro selection and evolution of functional proteins by using ribosome display
-
Hanes, J., Plückthun, A., In vitro selection and evolution of functional proteins by using ribosome display. Proc. Natl. Acad. Sci. USA 94, 4937-4942 (1997).
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 4937-4942
-
-
Hanes, J.1
Plückthun, A.2
-
18
-
-
67649663886
-
Yeast two-hybrid, a powerful tool for systems biology
-
Brückner, A., Polge, C., Lentze, N., Auerbach, D., Schlattner, U., Yeast two-hybrid, a powerful tool for systems biology. Int. J. Mol. Sci. 10, 2763-2788 (2009).
-
(2009)
Int. J. Mol. Sci
, vol.10
, pp. 2763-2788
-
-
Brückner, A.1
Polge, C.2
Lentze, N.3
Auerbach, D.4
Schlattner, U.5
-
19
-
-
36949000237
-
Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps. PLoS Comput
-
Huang, H., Jedynak, B. M., Bader, J. S., Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps. PLoS Comput. Biol. 3, e214 (2007).
-
(2007)
Biol
, vol.e214
, pp. 3
-
-
Huang, H.1
Jedynak, B.M.2
Bader, J.S.3
-
20
-
-
1042287279
-
Cloning allergens via phage display
-
Rhyner, C., et al., Cloning allergens via phage display. Methods 32, 212-218 (2004).
-
(2004)
Methods
, vol.32
, pp. 212-218
-
-
Rhyner, C.1
-
21
-
-
0029883704
-
Identification of calmodulin-binding peptide consensus sequences from a phage-displayed random peptide library
-
Adey, N. B., Kay, B. K., Identification of calmodulin-binding peptide consensus sequences from a phage-displayed random peptide library. Gene 169, 133-134 (1996)
-
(1996)
Gene
, vol.169
, pp. 133-134
-
-
Adey, N.B.1
Kay, B.K.2
-
22
-
-
33847630761
-
Eukaryotic ribosome display with in situ DNA recovery
-
He, M., Taussig, M. J., Eukaryotic ribosome display with in situ DNA recovery. Nat. Methods 4, 281-288 (2007).
-
(2007)
Nat. Methods
, vol.4
, pp. 281-288
-
-
He, M.1
Taussig, M.J.2
-
23
-
-
33847634290
-
Ribosome display: Selecting and evolving proteins in vitro that specifically bind to a target
-
Zahnd, C., Amstutz, P., Plückthun, A., Ribosome display: selecting and evolving proteins in vitro that specifically bind to a target. Nat. Methods 4, 269-279 (2007).
-
(2007)
Nat. Methods
, vol.4
, pp. 269-279
-
-
Zahnd, C.1
Amstutz, P.2
Plückthun, A.3
-
24
-
-
35448974535
-
Proteome-wide identification of family member-specific natural substrate repertoire of caspases
-
Ju, W., et al., Proteome-wide identification of family member-specific natural substrate repertoire of caspases. Proc. Natl. Acad. Sci. USA 104, 14294-14299 (2007).
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 14294-14299
-
-
Ju, W.1
-
25
-
-
17844410932
-
Scanning the human proteome for calmodulin-binding proteins
-
Shen, X., et al., Scanning the human proteome for calmodulin-binding proteins. Proc. Natl. Acad. Sci. USA 102, 5969-5974 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5969-5974
-
-
Shen, X.1
-
26
-
-
42149112800
-
Ca2+/calmodulin-binding proteins from the c.Elegans proteome
-
Shen, X., et al., Ca(2+)/Calmodulin-binding proteins from the C. elegans proteome. Cell Calcium 43, 444-456 (2008).
-
(2008)
Cell Calcium
, vol.43
, pp. 444-456
-
-
Shen, X.1
-
27
-
-
34548486701
-
Comparison of mRNA-display-based selections using synthetic peptide and natural protein libraries
-
Huang, B., Liu, R., Comparison of mRNA-display-based selections using synthetic peptide and natural protein libraries. Biochemistry 46, 10102-10112 (2007).
-
(2007)
Biochemistry
, vol.46
, pp. 10102-10112
-
-
Huang, B.1
Liu, R.2
-
28
-
-
45149092892
-
MRNA-display-based selections for proteins with desired functions: A protease-substrate case study
-
Valencia, C. A., Cotten, S. W., Dong, B., Liu, R., mRNA-display-based selections for proteins with desired functions: a protease-substrate case study. Biotechnol. Prog. 24, 561-569 (2008).
-
(2008)
Biotechnol. Prog
, vol.24
, pp. 561-569
-
-
Valencia, C.A.1
Cotten, S.W.2
Dong, B.3
Liu, R.4
-
29
-
-
0030817279
-
RNA-peptide fusions for the in vitro selection of peptides and proteins
-
Roberts, R. W., Szostak, J. W., RNA-peptide fusions for the in vitro selection of peptides and proteins. Proc. Natl. Acad. Sci. USA 94, 12297-12302 (1997).
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 12297-12302
-
-
Roberts, R.W.1
Szostak, J.W.2
-
30
-
-
0033643217
-
Optimized synthesis of RNA-protein fusions for in vitro protein selection
-
Liu, R., Barrick, J. E., Szostak, J. W., Roberts, R. W., Optimized synthesis of RNA-protein fusions for in vitro protein selection. Meth. Enzymol. 318, 268-293 (2000).
-
(2000)
Meth. Enzymol
, vol.318
, pp. 268-293
-
-
Liu, R.1
Barrick, J.E.2
Szostak, J.W.3
Roberts, R.W.4
-
31
-
-
0031559943
-
Vitro virus: Bonding of mRNA bearing puromycin at the 3′-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro
-
Nemoto, N., Miyamoto-Sato, E., Husimi, Y., Yanagawa, H., In vitro virus: bonding of mRNA bearing puromycin at the 3′-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro. FEBS Lett. 414, 405-408 (1997).
-
(1997)
FEBS Lett
, vol.414
, pp. 405-408
-
-
Nemoto, N.1
Miyamoto-Sato, E.2
Husimi, Y.3
Yanagawa, H.4
-
32
-
-
0035877791
-
Vitro selection and characterization of Bcl-10(50)-binding proteins from a mix of tissue-specific mRNA display libraries
-
Hammond, P. W., Alpin, J., Rise, C. E., Wright, M., Kreider, B. L., In vitro selection and characterization of Bcl-10(50)-binding proteins from a mix of tissue-specific mRNA display libraries. J. Biol. Chem. 276, 20898-20906 (2001).
-
(2001)
J. Biol. Chem
, vol.276
-
-
Hammond, P.W.1
Alpin, J.2
Rise, C.E.3
Wright, M.4
Kreider, B.L.5
-
33
-
-
0036008852
-
Selection of 5-abl tyrosine kinase substrate sequences from randomized peptide and cellular proteomic libraries using mRNA display
-
Cujec, T. P., Medeiros, P. F., Hammond, P., Rise, C., Kreider, B. L., Selection of 5-abl tyrosine kinase substrate sequences from randomized peptide and cellular proteomic libraries using mRNA display. Chem. Biol. 9, 253-264 (2002).
-
(2002)
Chem. Biol
, vol.9
, pp. 253-264
-
-
Cujec, T.P.1
Medeiros, P.F.2
Hammond, P.3
Rise, C.4
Kreider, B.L.5
-
34
-
-
0035986682
-
Drug receptor identification from multiple tissues using cellular-derived mRNA display libraries
-
McPherson, M., Yang, Y., Hammond, P. W., Kreider, B. L., Drug receptor identification from multiple tissues using cellular-derived mRNA display libraries. Chem. Biol. 9, 691-698 (2002).
-
(2002)
Chem. Biol
, vol.9
, pp. 691-698
-
-
McPherson, M.1
Yang, Y.2
Hammond, P.W.3
Kreider, B.L.4
-
35
-
-
16544369553
-
Vitro selection of Jun-associated proteins using mRNA display
-
Horisawa, K., et al., In vitro selection of Jun-associated proteins using mRNA display. Nucleic Acids. Res. 32, e169 (2004).
-
(2004)
, vol.32
, Issue.e169
-
-
Horisawa, K.1
-
36
-
-
33750982135
-
Vitro evolution of single-chain antibodies using mRNA display
-
Fukuda, I., et al. In vitro evolution of single-chain antibodies using mRNA display. Nucleic Acids. Res. 34, e127 (2006).
-
(2006)
Nucleic Acids. Res
, vol.34
, Issue.e127
-
-
Fukuda, I.1
-
37
-
-
23944452871
-
Ribosomal synthesis of unnatural peptides
-
Josephson, K., Hartman, M. C. T., Szostak, J. W., Ribosomal synthesis of unnatural peptides. J. Am. Chem. Soc. 127, 11727-11735 (2005).
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 11727-11735
-
-
Josephson, K.1
Hartman, M.C.T.2
Szostak, J.W.3
-
38
-
-
34547958191
-
Selection and evolution of enzymes from a partially randomized non-catalytic scaffold
-
Seelig, B., Szostak, J. W., Selection and evolution of enzymes from a partially randomized non-catalytic scaffold. Nature 448, 828-831 (2007).
-
(2007)
Nature
, vol.448
, pp. 828-831
-
-
Seelig, B.1
Szostak, J.W.2
-
39
-
-
0035957374
-
The use of mRNA display to select high-affinity protein-binding peptides
-
Wilson, D. S., Keefe, A. D., Szostak, J. W., The use of mRNA display to select high-affinity protein-binding peptides. Proc. Natl. Acad. Sci. USA 98, 3750-3755 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 3750-3755
-
-
Wilson, D.S.1
Keefe, A.D.2
Szostak, J.W.3
-
40
-
-
18544397601
-
Directed evolution of high-affinity antibody mimics using mRNA display
-
Xu, L., et al., Directed evolution of high-affinity antibody mimics using mRNA display. Chem. Biol. 9, 933-942 (2002).
-
(2002)
Chem. Biol
, vol.9
, pp. 933-942
-
-
Xu, L.1
-
41
-
-
53149108997
-
MRNA display selection of a high-affinity, modification-specific phospho-IkappaBalpha-binding fibronectin
-
Olson, C. A., Liao, H., Sun, R., Roberts, R. W., mRNA display selection of a high-affinity, modification-specific phospho-IkappaBalpha-binding fibronectin. ACS Chem. Biol. 3, 480-485 (2008).
-
(2008)
ACS Chem. Biol
, vol.3
, pp. 480-485
-
-
Olson, C.A.1
Liao, H.2
Sun, R.3
Roberts, R.W.4
-
42
-
-
67650555401
-
MRNA display design of fibronectin-based intrabodies that detect and inhibit severe acute respiratory syndrome coronavirus nucleocapsid protein
-
Liao, H., et al., mRNA display design of fibronectin-based intrabodies that detect and inhibit severe acute respiratory syndrome coronavirus nucleocapsid protein. J. Biol. Chem. 284, 17512-17520 (2009).
-
(2009)
J. Biol. Chem
, vol.284
, pp. 17512-17520
-
-
Liao, H.1
-
43
-
-
58649104919
-
Six classes of nuclear localization signals specific to different binding grooves of importin alpha
-
Kosugi, S., et al., Six classes of nuclear localization signals specific to different binding grooves of importin alpha. J. Biol. Chem. 284, 478-485 (2009).
-
(2009)
J. Biol. Chem
, vol.284
, pp. 478-485
-
-
Kosugi, S.1
-
44
-
-
40849146897
-
Evolution of class-specific peptides targeting a hot spot of the Galphas subunit
-
Austin, R. J., Ja, W. W., Roberts, R. W., Evolution of class-specific peptides targeting a hot spot of the Galphas subunit. J. Mol. Biol. 377, 1406-1418 (2008).
-
(2008)
J. Mol. Biol
, vol.377
, pp. 1406-1418
-
-
Austin, R.J.1
Ja, W.W.2
Roberts, R.W.3
-
45
-
-
84988043528
-
-
Ambion. retic mysate IVT, Instruction manual. At and;http://www.ambion.com/catalog/ProdGrp.html?fkApp=11&fkProdGrp=103〉.
-
Instruction Manual. At
-
-
-
46
-
-
0034708337
-
Constructing high complexity synthetic libraries of long ORFs using in vitro selection
-
Cho, G., Keefe, A. D., Liu, R., Wilson, D. S., Szostak, J. W., Constructing high complexity synthetic libraries of long ORFs using in vitro selection. J. Mol. Biol. 297, 309-319 (2000).
-
(2000)
J. Mol. Biol
, vol.297
, pp. 309-319
-
-
Cho, G.1
Keefe, A.D.2
Liu, R.3
Wilson, D.S.4
Szostak, J.W.5
-
47
-
-
17544399298
-
Psoralen photo-crosslinked mRNA-puromycin conjugates: A novel template for the rapid and facile preparation of mRNA-protein fusions
-
Kurz, M., Gu, K., Lohse, P. A., Psoralen photo-crosslinked mRNA-puromycin conjugates: a novel template for the rapid and facile preparation of mRNA-protein fusions. Nucleic Acids. Res. 28, e83 (2000).
-
(2000)
Nucleic Acids. Res
, vol.e83
, pp. 28
-
-
Kurz, M.1
Gu, K.2
Lohse, P.A.3
-
48
-
-
23044447796
-
New genotype-phenotype linkages for directed evolution of functional proteins
-
Leemhuis, H., Stein, V., Griffiths, A. D., Hollfelder, F., New genotype-phenotype linkages for directed evolution of functional proteins. Curr. Opin. Struct. Biol. 15, 472-478 (2005).
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 472-478
-
-
Leemhuis, H.1
Stein, V.2
Griffiths, A.D.3
Hollfelder, F.4
-
49
-
-
0036452678
-
An efficient ligation method in the making of an in vitro virus for in vitro protein evolution
-
Tabuchi, I., et al., An efficient ligation method in the making of an in vitro virus for in vitro protein evolution. Biol. Proced Online 4, 49-54 (2002).
-
(2002)
Biol. Proced Online
, vol.4
, pp. 49-54
-
-
Tabuchi, I.1
-
50
-
-
72849144434
-
Sequencing technologies-the next generation
-
Metzker, M. L., Sequencing technologies-the next generation. Nat. Rev. Genet. 11, 31-46 (2010).
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
|