메뉴 건너뛰기




Volumn 51, Issue 12, 2011, Pages 3060-3077

Jointly handling potency and toxicity of antimicrobial peptidomimetics by simple rules from desirability theory and chemoinformatics

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTICS; FORECASTING; HEALTH RISKS; LEARNING SYSTEMS; PEPTIDES; TOXICITY;

EID: 84555177568     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci2002186     Document Type: Article
Times cited : (19)

References (90)
  • 1
    • 56849091862 scopus 로고    scopus 로고
    • Antimicrobial Resistance in Europe and Its Potential Impact on Empirical Therapy
    • Rossolini, G. M.; Mantengoli, E. Antimicrobial Resistance in Europe and Its Potential Impact on Empirical Therapy Clin. Microbiol. Infect. 2008, 14, 2-8
    • (2008) Clin. Microbiol. Infect. , vol.14 , pp. 2-8
    • Rossolini, G.M.1    Mantengoli, E.2
  • 2
    • 29144493229 scopus 로고    scopus 로고
    • Prevalence and Antimicrobial Susceptibility Data for Extended-Spectrum Betalactamase and Ampc-Producing Enterobacteriaceae from the Mystic Program in Europe and the United States (1997-2004)
    • Goossens, H.; Grabein, B. Prevalence and Antimicrobial Susceptibility Data for Extended-Spectrum Betalactamase and Ampc-Producing Enterobacteriaceae from the Mystic Program in Europe and the United States (1997-2004) Diagn. Microbiol. Infect. Dis. 2005, 53, 257-264
    • (2005) Diagn. Microbiol. Infect. Dis. , vol.53 , pp. 257-264
    • Goossens, H.1    Grabein, B.2
  • 3
    • 24044511840 scopus 로고    scopus 로고
    • Emergence of Enterobacteriaceae Producing Extended-Spectrum Beta-Lactamases (Esbls) in the Community
    • Pitout, J. D.; Nordmann, P.; Laupland, K. B.; Poirel, L. Emergence of Enterobacteriaceae Producing Extended-Spectrum Beta-Lactamases (Esbls) in the Community J. Antimicrob. Chemother. 2005, 56, 52-59
    • (2005) J. Antimicrob. Chemother. , vol.56 , pp. 52-59
    • Pitout, J.D.1    Nordmann, P.2    Laupland, K.B.3    Poirel, L.4
  • 4
    • 33845699790 scopus 로고    scopus 로고
    • Antimicrobial and Host-Defense Peptides as New Anti-Infective Therapeutic Strategies
    • Hancock, R. E.; Sahl, H. G. Antimicrobial and Host-Defense Peptides as New Anti-Infective Therapeutic Strategies Nat. Biotechnol. 2006, 24, 1551-1557
    • (2006) Nat. Biotechnol. , vol.24 , pp. 1551-1557
    • Hancock, R.E.1    Sahl, H.G.2
  • 5
    • 32544456244 scopus 로고    scopus 로고
    • Antimicrobial Peptides: New Candidates in the Fight against Bacterial Infections
    • Toke, O. Antimicrobial Peptides: New Candidates in the Fight against Bacterial Infections Biopolymers 2005, 80, 717-735
    • (2005) Biopolymers , vol.80 , pp. 717-735
    • Toke, O.1
  • 6
    • 0032444189 scopus 로고    scopus 로고
    • Antimicrobial Peptides from Amphibian Skin: What Do They Tell Us?
    • Simmaco, M.; Mignogna, G.; Barra, D. Antimicrobial Peptides from Amphibian Skin: What Do They Tell Us? Biopolymers 1998, 47, 435-450
    • (1998) Biopolymers , vol.47 , pp. 435-450
    • Simmaco, M.1    Mignogna, G.2    Barra, D.3
  • 7
    • 1642545489 scopus 로고    scopus 로고
    • Anti-Microbial Peptides: From Invertebrates to Vertebrates
    • Bulet, P.; Stocklin, R.; Menin, L. Anti-Microbial Peptides: From Invertebrates to Vertebrates Immunol. Rev. 2004, 198, 169-184
    • (2004) Immunol. Rev. , vol.198 , pp. 169-184
    • Bulet, P.1    Stocklin, R.2    Menin, L.3
  • 8
    • 13944259333 scopus 로고    scopus 로고
    • Properties and Structure-Activity Studies of Cyclic Beta-Hairpin Peptidomimetics Based on the Cationic Antimicrobial Peptide Protegrin i
    • Robinson, J. A.; Shankaramma, S. C.; Jetter, P.; Kienzl, U.; Schwendener, R. A.; Vrijbloed, J. W.; Obrecht, D. Properties and Structure-Activity Studies of Cyclic Beta-Hairpin Peptidomimetics Based on the Cationic Antimicrobial Peptide Protegrin I Bioorg. Med. Chem. 2005, 13, 2055-2064
    • (2005) Bioorg. Med. Chem. , vol.13 , pp. 2055-2064
    • Robinson, J.A.1    Shankaramma, S.C.2    Jetter, P.3    Kienzl, U.4    Schwendener, R.A.5    Vrijbloed, J.W.6    Obrecht, D.7
  • 9
    • 33748413776 scopus 로고    scopus 로고
    • Antibacterial Peptides for Therapeutic Use: Obstacles and Realistic Outlook
    • Marr, A. K.; Gooderham, W. J.; Hancock, R. E. Antibacterial Peptides for Therapeutic Use: Obstacles and Realistic Outlook Curr. Opin. Pharmacol. 2006, 6, 468-472
    • (2006) Curr. Opin. Pharmacol. , vol.6 , pp. 468-472
    • Marr, A.K.1    Gooderham, W.J.2    Hancock, R.E.3
  • 10
    • 0033532175 scopus 로고    scopus 로고
    • Dissociation of Antimicrobial and Hemolytic Activities in Cyclic Peptide Diastereomers by Systematic Alterations in Amphipathicity
    • Kondejewski, L. H.; Jelokhani-Niaraki, M.; Farmer, S. W.; Lix, B.; Kay, C. M.; Sykes, B. D.; Hancock, R. E.; Hodges, R. S. Dissociation of Antimicrobial and Hemolytic Activities in Cyclic Peptide Diastereomers by Systematic Alterations in Amphipathicity J. Biol. Chem. 1999, 274, 13181-13192
    • (1999) J. Biol. Chem. , vol.274 , pp. 13181-13192
    • Kondejewski, L.H.1    Jelokhani-Niaraki, M.2    Farmer, S.W.3    Lix, B.4    Kay, C.M.5    Sykes, B.D.6    Hancock, R.E.7    Hodges, R.S.8
  • 11
    • 79251524952 scopus 로고    scopus 로고
    • Descriptors for Antimicrobial Peptides
    • Jenssen, H. Descriptors for Antimicrobial Peptides Expert Opin. Drug Discovery 2011, 6, 171-184
    • (2011) Expert Opin. Drug Discovery , vol.6 , pp. 171-184
    • Jenssen, H.1
  • 14
    • 77649339280 scopus 로고    scopus 로고
    • Review: Recent Advances in Developing Web-Servers for Predicting Protein Attributes
    • Chou, K. C.; Shen, H. B. Review: Recent Advances in Developing Web-Servers for Predicting Protein Attributes Nat. Sci. 2009, 2, 63-92
    • (2009) Nat. Sci. , vol.2 , pp. 63-92
    • Chou, K.C.1    Shen, H.B.2
  • 15
    • 33746075554 scopus 로고    scopus 로고
    • Qsar Analysis of Antimicrobial and Haemolytic Effects of Cyclic Cationic Antimicrobial Peptides Derived from Protegrin-1
    • Frecer, V. Qsar Analysis of Antimicrobial and Haemolytic Effects of Cyclic Cationic Antimicrobial Peptides Derived from Protegrin-1 Bioorg. Med. Chem. 2006, 14, 6065-6074
    • (2006) Bioorg. Med. Chem. , vol.14 , pp. 6065-6074
    • Frecer, V.1
  • 17
    • 70350512848 scopus 로고    scopus 로고
    • Improving Quantitative Structure-Activity Relationships through Multiobjective Optimization
    • Nicolotti, O.; Giangreco, I.; Miscioscia, T. F.; Carotti, A. Improving Quantitative Structure-Activity Relationships through Multiobjective Optimization J. Chem. Inf. Model. 2009, 49, 2290-2302
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 2290-2302
    • Nicolotti, O.1    Giangreco, I.2    Miscioscia, T.F.3    Carotti, A.4
  • 18
    • 33645750989 scopus 로고    scopus 로고
    • The Importance of the Development of Antibiotic Resistance in Staphylococcus Aureus
    • Schito, G. C. The Importance of the Development of Antibiotic Resistance in Staphylococcus Aureus Clin. Microbiol. Infect. 2006, 12, 3-8
    • (2006) Clin. Microbiol. Infect. , vol.12 , pp. 3-8
    • Schito, G.C.1
  • 22
    • 0000432952 scopus 로고
    • Simultaneous Optimization of Several Response Variables
    • Derringer, G.; Suich, R. Simultaneous Optimization of Several Response Variables J. Quality Technol. 1980, 12, 214-219
    • (1980) J. Quality Technol. , vol.12 , pp. 214-219
    • Derringer, G.1    Suich, R.2
  • 23
    • 79951518208 scopus 로고    scopus 로고
    • Some Remarks on Protein Attribute Prediction and Pseudo Amino Acid Composition (50th Anniversary Year Review)
    • Chou, K. C. Some Remarks on Protein Attribute Prediction and Pseudo Amino Acid Composition (50th Anniversary Year Review) J. Theor. Biol. 2011, 273, 236-247
    • (2011) J. Theor. Biol. , vol.273 , pp. 236-247
    • Chou, K.C.1
  • 24
    • 79953316878 scopus 로고    scopus 로고
    • Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins
    • Chou, K. C.; Wu, Z. C.; Xiao, X.; Iloc-Euk, A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins PLoS One 2011, 6, e18258
    • (2011) PLoS One , vol.6 , pp. 18258
    • Chou, K.C.1    Wu, Z.C.2    Xiao, X.3    Iloc-Euk, A.4
  • 25
    • 34548606295 scopus 로고    scopus 로고
    • Review: Recent Progresses in Protein Subcellular Location Prediction
    • Chou, K. C.; Shen, H. B. Review: Recent Progresses in Protein Subcellular Location Prediction Anal. Biochem. 2007, 370, 1-16
    • (2007) Anal. Biochem. , vol.370 , pp. 1-16
    • Chou, K.C.1    Shen, H.B.2
  • 26
    • 0000049522 scopus 로고
    • The Desirability Function
    • Harrington, E. C. The Desirability Function Ind. Quality Control 1965, 21, 494-498
    • (1965) Ind. Quality Control , vol.21 , pp. 494-498
    • Harrington, E.C.1
  • 27
    • 0031716788 scopus 로고    scopus 로고
    • Optimization of Selectivity in High-Performance Liquid Chromatography Using Desirability Functions and Mixture Designs According to Prisma
    • Outinen, K.; Haario, H.; Vuorela, P.; Nyman, M.; Ukkonen, E.; Vuorela, H. Optimization of Selectivity in High-Performance Liquid Chromatography Using Desirability Functions and Mixture Designs According to Prisma Eur. J. Pharm. Sci. 1998, 6, 197-205
    • (1998) Eur. J. Pharm. Sci. , vol.6 , pp. 197-205
    • Outinen, K.1    Haario, H.2    Vuorela, P.3    Nyman, M.4    Ukkonen, E.5    Vuorela, H.6
  • 28
    • 0043172573 scopus 로고    scopus 로고
    • Titrating and Evaluating Multi-Drug Regimens within Subjects
    • Shih, M.; Gennings, C.; Chinchilli, V. M.; Carter, W. H., Jr. Titrating and Evaluating Multi-Drug Regimens within Subjects Stat. Med. 2003, 22, 2257-2279
    • (2003) Stat. Med. , vol.22 , pp. 2257-2279
    • Shih, M.1    Gennings, C.2    Chinchilli, V.M.3    Carter, Jr.W.H.4
  • 29
    • 8844245702 scopus 로고    scopus 로고
    • A Neuroeconomics Approach to Inferring Utility Functions in Sensorimotor Control
    • Kording, K. P.; Fukunaga, I.; Howard, I. S.; Ingram, J. N.; Wolpert, D. M. A Neuroeconomics Approach to Inferring Utility Functions in Sensorimotor Control PLoS Biol. 2004, 2, e330
    • (2004) PLoS Biol. , vol.2 , pp. 330
    • Kording, K.P.1    Fukunaga, I.2    Howard, I.S.3    Ingram, J.N.4    Wolpert, D.M.5
  • 30
    • 66149178002 scopus 로고    scopus 로고
    • Modeling and Multi-Response Optimization of Pervaporation of Organic Aqueous Solutions Using Desirability Function Approach
    • Cojocaru, C.; Khayet, M.; Zakrzewska-Trznadel, G.; Jaworska, A. Modeling and Multi-Response Optimization of Pervaporation of Organic Aqueous Solutions Using Desirability Function Approach J. Hazard. Mater. 2009, 167, 52-63
    • (2009) J. Hazard. Mater. , vol.167 , pp. 52-63
    • Cojocaru, C.1    Khayet, M.2    Zakrzewska-Trznadel, G.3    Jaworska, A.4
  • 32
    • 52649100411 scopus 로고    scopus 로고
    • Desirability-Based Multiobjective Optimization for Global Qsar Studies: Application to the Design of Novel Nsaids with Improved Analgesic, Antiinflammatory, and Ulcerogenic Profiles
    • Cruz-Monteagudo, M.; Borges, F.; Cordeiro, M. N. Desirability-Based Multiobjective Optimization for Global Qsar Studies: Application to the Design of Novel Nsaids with Improved Analgesic, Antiinflammatory, and Ulcerogenic Profiles J. Comput. Chem. 2008, 29, 2445-2459
    • (2008) J. Comput. Chem. , vol.29 , pp. 2445-2459
    • Cruz-Monteagudo, M.1    Borges, F.2    Cordeiro, M.N.3
  • 33
    • 77954814751 scopus 로고    scopus 로고
    • Evolving Molecules Using Multi-Objective Optimization: Applying to Adme/Tox
    • Ekins, S.; Honeycutt, J. D.; Metz, J. T. Evolving Molecules Using Multi-Objective Optimization: Applying to Adme/Tox Drug Discovery Today 2010, 15, 451-460
    • (2010) Drug Discovery Today , vol.15 , pp. 451-460
    • Ekins, S.1    Honeycutt, J.D.2    Metz, J.T.3
  • 34
    • 77952603927 scopus 로고    scopus 로고
    • Prioritizing Hits with Appropriate Trade-Offs between Hiv-1 Reverse Transcriptase Inhibitory Efficacy and Mt4 Blood Cells Toxicity through Desirability-Based Multi-Objective Optimization and Ranking
    • Cruz-Monteagudo, M.; The, H. P.; Cordeiro, M. N. D. S.; Borges, F. Prioritizing Hits with Appropriate Trade-Offs between Hiv-1 Reverse Transcriptase Inhibitory Efficacy and Mt4 Blood Cells Toxicity through Desirability-Based Multi-Objective Optimization and Ranking Mol. Inf. 2010, 29, 303-321
    • (2010) Mol. Inf. , vol.29 , pp. 303-321
    • Cruz-Monteagudo, M.1    The, H.P.2    Cordeiro, M.N.D.S.3    Borges, F.4
  • 35
    • 70449651676 scopus 로고    scopus 로고
    • Application of Desirability-Based Multi(Bi)-Objective Optimization in the Design of Selective Arylpiperazine Derivates for the 5-Ht1a Serotonin Receptor
    • Machado, A.; Tejera, E.; Cruz-Monteagudo, M.; Rebelo, I. Application of Desirability-Based Multi(Bi)-Objective Optimization in the Design of Selective Arylpiperazine Derivates for the 5-Ht1a Serotonin Receptor Eur. J. Med. Chem. 2009, 44, 5045-5054
    • (2009) Eur. J. Med. Chem. , vol.44 , pp. 5045-5054
    • MacHado, A.1    Tejera, E.2    Cruz-Monteagudo, M.3    Rebelo, I.4
  • 36
    • 77951958514 scopus 로고    scopus 로고
    • Multidimensional Drug Design: Simultaneous Analysis of Binding and Relative Efficacy Profiles of N6-Substituted-4́-Thioadenosines A3 Adenosine Receptor Agonists
    • Cruz-Monteagudo, M.; Cordeiro, M. N. D. S.; Teijeira, M.; González, M. P.; Borges, F. Multidimensional Drug Design: Simultaneous Analysis of Binding and Relative Efficacy Profiles of N6-Substituted-4́- Thioadenosines A3 Adenosine Receptor Agonists Chem. Biol. Drug. Des. 2010, 75, 607-618
    • (2010) Chem. Biol. Drug. Des. , vol.75 , pp. 607-618
    • Cruz-Monteagudo, M.1    Cordeiro, M.N.D.S.2    Teijeira, M.3    González, M.P.4    Borges, F.5
  • 37
    • 77956874635 scopus 로고    scopus 로고
    • Rationalizing Fragment Based Drug Discovery for Bace1: Insights from Fb-Qsar, Fb-Qssr, Multi Objective (Mo-Qspr) and Mif Studies
    • Manoharan, P.; Vijayan, R. S. K.; Ghoshal, N. Rationalizing Fragment Based Drug Discovery for Bace1: Insights from Fb-Qsar, Fb-Qssr, Multi Objective (Mo-Qspr) and Mif Studies J. Comput.-Aided Mol. Des. 2010, 24, 843-864
    • (2010) J. Comput.-Aided Mol. Des. , vol.24 , pp. 843-864
    • Manoharan, P.1    Vijayan, R.S.K.2    Ghoshal, N.3
  • 38
    • 77956964002 scopus 로고    scopus 로고
    • Best Practices for Qsar Model Development, Validation, and Exploitation
    • Tropsha, A. Best Practices for Qsar Model Development, Validation, and Exploitation Mol. Inf. 2010, 29, 476-488
    • (2010) Mol. Inf. , vol.29 , pp. 476-488
    • Tropsha, A.1
  • 39
    • 84555180775 scopus 로고    scopus 로고
    • version 6.0; (Software for Molecular Descriptor Calculation); Talete srl: Milano, Italy
    • Dragon, version 6.0; (Software for Molecular Descriptor Calculation); Talete srl: Milano, Italy, 2010.
    • (2010) Dragon
  • 41
    • 77957329669 scopus 로고    scopus 로고
    • Cationic Amphiphiles, a New Generation of Antimicrobials Inspired by the Natural Antimicrobial Peptide Scaffold
    • Findlay, B.; Zhanel, G. G.; Schweizer, F. Cationic Amphiphiles, a New Generation of Antimicrobials Inspired by the Natural Antimicrobial Peptide Scaffold Antimicrob. Agents Chemother. 2010, 54, 4049-4058
    • (2010) Antimicrob. Agents Chemother. , vol.54 , pp. 4049-4058
    • Findlay, B.1    Zhanel, G.G.2    Schweizer, F.3
  • 42
    • 0007912674 scopus 로고
    • X-Ray Crystal Structure of Pivaloyl-D-Pro-L-Pro-L-Ala-N-Methylamide; Observation of a Consecutive B-Turn Conformation
    • Nair, C. M.; Vijayan, M.; Venkatachalapathi, Y. V.; Balaram, P. X-Ray Crystal Structure of Pivaloyl-D-Pro-L-Pro-L-Ala-N-Methylamide; Observation of a Consecutive B-Turn Conformation J. Chem. Soc., Chem. Commun. 1979, 1183-1184
    • (1979) J. Chem. Soc., Chem. Commun. , pp. 1183-1184
    • Nair, C.M.1    Vijayan, M.2    Venkatachalapathi, Y.V.3    Balaram, P.4
  • 43
    • 0000032313 scopus 로고
    • Conformational Analysis of Cyclic Hexapeptides Containing the D-Pro-L-Pro Sequence to Fix B-Turn Positions
    • Bean, J. W.; Kopple, K. D.; Peishoff, C. E. Conformational Analysis of Cyclic Hexapeptides Containing the D-Pro-L-Pro Sequence to Fix B-Turn Positions J. Am. Chem. Soc. 1992, 114, 5328-5334
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 5328-5334
    • Bean, J.W.1    Kopple, K.D.2    Peishoff, C.E.3
  • 44
    • 0000325130 scopus 로고
    • Pro-D-Nme-Amino Acid and D-Pro-Nme-Amino Acid: Simple, Efficient Reverse Turn Constraints
    • Chalmers, D. K.; Marshall, G. R. Pro-D-Nme-Amino Acid and D-Pro-Nme-Amino Acid: Simple, Efficient Reverse Turn Constraints J. Am. Chem. Soc. 1995, 117, 5927-5937
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 5927-5937
    • Chalmers, D.K.1    Marshall, G.R.2
  • 45
    • 73849124584 scopus 로고    scopus 로고
    • Integrated Chemo- and Bioinformatics Approaches to Virtual Screening
    • In; Varnek, A. Tropsha, A. Eds. Royal Society of Chemistry: Cambridge, U.K
    • Tropsha, A. Integrated Chemo- and Bioinformatics Approaches to Virtual Screening. In Chemoinformatics Approaches to Virtual Screening; Varnek, A.; Tropsha, A., Eds. Royal Society of Chemistry: Cambridge, U.K., 2008; pp 295-325.
    • (2008) Chemoinformatics Approaches to Virtual Screening , pp. 295-325
    • Tropsha, A.1
  • 46
    • 0032474777 scopus 로고    scopus 로고
    • New Chemical Descriptors Relevant for the Design of Biologically Active Peptides. A Multivariate Characterization of 87 Amino Acids
    • Sandberg, M.; Eriksson, L.; Jonsson, J.; Sjöström, M.; Wold, S. New Chemical Descriptors Relevant for the Design of Biologically Active Peptides. A Multivariate Characterization of 87 Amino Acids J. Med. Chem. 1998, 41, 2481-2491
    • (1998) J. Med. Chem. , vol.41 , pp. 2481-2491
    • Sandberg, M.1    Eriksson, L.2    Jonsson, J.3    Sjöström, M.4    Wold, S.5
  • 48
    • 0035789124 scopus 로고    scopus 로고
    • New Quantitative Descriptors of Amino Acids Based on Multidimensional Scaling of a Large Number of Physical-Chemical Properties
    • Venkatarajan, M. S.; Braun, W. New Quantitative Descriptors of Amino Acids Based on Multidimensional Scaling of a Large Number of Physical-Chemical Properties J. Mol. Model. 2001, 7, 445-453
    • (2001) J. Mol. Model. , vol.7 , pp. 445-453
    • Venkatarajan, M.S.1    Braun, W.2
  • 50
    • 0037251966 scopus 로고    scopus 로고
    • Sdap: Database and Computational Tools for Allergenic Proteins
    • Ivanciuc, O.; Schein, C. H.; Braun, W. Sdap: Database and Computational Tools for Allergenic Proteins Nucleic Acids Res. 2003, 31, 359-362
    • (2003) Nucleic Acids Res. , vol.31 , pp. 359-362
    • Ivanciuc, O.1    Schein, C.H.2    Braun, W.3
  • 51
    • 0036772523 scopus 로고    scopus 로고
    • Data Mining of Sequences and 3d Structures of Allergenic Proteins
    • Ivanciuc, O.; Schein, C. H.; Braun, W. Data Mining of Sequences and 3d Structures of Allergenic Proteins Bioinformatics 2002, 18, 1358-1364
    • (2002) Bioinformatics , vol.18 , pp. 1358-1364
    • Ivanciuc, O.1    Schein, C.H.2    Braun, W.3
  • 52
    • 72449181810 scopus 로고    scopus 로고
    • Machine Learning Quantitative Structure-Activity Relationships (Qsar) for Peptides Binding to the Human Amphiphysin-1 Sh3 Domain
    • Ivanciuc, O. Machine Learning Quantitative Structure-Activity Relationships (Qsar) for Peptides Binding to the Human Amphiphysin-1 Sh3 Domain Curr. Proteomics 2009, 6, 289-302
    • (2009) Curr. Proteomics , vol.6 , pp. 289-302
    • Ivanciuc, O.1
  • 53
    • 0001245212 scopus 로고    scopus 로고
    • Use of Automatic Relevance Determination in Qsar Studies Using Bayesian Neural Networks
    • Burden, F. R.; Ford, M. G.; Whitley, D. C.; Winkler, D. A. Use of Automatic Relevance Determination in Qsar Studies Using Bayesian Neural Networks J. Chem. Inf. Comput. Sci. 2000, 40, 1423-1430
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 1423-1430
    • Burden, F.R.1    Ford, M.G.2    Whitley, D.C.3    Winkler, D.A.4
  • 54
    • 70349722294 scopus 로고    scopus 로고
    • version 8.0; (Data analysis software system); StatSoft Inc. Tulsa, OK
    • Statistica, version 8.0; (Data analysis software system); StatSoft Inc.: Tulsa, OK, 2007.
    • (2007) Statistica
  • 55
    • 84855736921 scopus 로고    scopus 로고
    • In Proceedings of the XIX International Symposium on Medicinal Chemistry, Istanbul, Turkey, August 29-September 2, 2006, 2006; (accessed April 12)
    • Kubinyi, H. Virtual Screening-the Road to Success. In Proceedings of the XIX International Symposium on Medicinal Chemistry, Istanbul, Turkey, August 29-September 2, 2006, 2006; http://kubinyi.de/istanbul-09-06.pdf (accessed April 12, 2011).
    • (2011) Virtual Screening - The Road to Success
    • Kubinyi, H.1
  • 57
    • 0029157083 scopus 로고
    • Review: Prediction of Protein Structural Classes
    • Chou, K. C.; Zhang, C. T. Review: Prediction of Protein Structural Classes Crit. Rev. Biochem. Mol. Biol. 1995, 30, 275-349
    • (1995) Crit. Rev. Biochem. Mol. Biol. , vol.30 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 58
    • 78649756877 scopus 로고    scopus 로고
    • Predicting Membrane Protein Types by Fusing Composite Protein Sequence Features into Pseudo Amino Acid Composition
    • Hayat, M.; Khan, A. Predicting Membrane Protein Types by Fusing Composite Protein Sequence Features into Pseudo Amino Acid Composition J. Theor. Biol. 2011, 271, 10-17
    • (2011) J. Theor. Biol. , vol.271 , pp. 10-17
    • Hayat, M.1    Khan, A.2
  • 59
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of Protein Cellular Attributes Using Pseudo Amino Acid Composition
    • Chou, K. C. Prediction of Protein Cellular Attributes Using Pseudo Amino Acid Composition Proteins 2001, 43, 246-255
    • (2001) Proteins , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 60
    • 34548439881 scopus 로고    scopus 로고
    • Using Chou's Amphiphilic Pseudo-Amino Acid Composition and Support Vector Machine for Prediction of Enzyme Subfamily Classes
    • Zhou, X. B.; Chen, C.; Li, Z. C.; Zou, X. Y. Using Chou's Amphiphilic Pseudo-Amino Acid Composition and Support Vector Machine for Prediction of Enzyme Subfamily Classes J. Theor. Biol. 2007, 248, 546-551
    • (2007) J. Theor. Biol. , vol.248 , pp. 546-551
    • Zhou, X.B.1    Chen, C.2    Li, Z.C.3    Zou, X.Y.4
  • 62
    • 78149247827 scopus 로고    scopus 로고
    • Prediction of Protein Submitochondria Locations Based on Data Fusion of Various Features of Sequences
    • Zakeri, P.; Moshiri, B.; Sadeghi, M. Prediction of Protein Submitochondria Locations Based on Data Fusion of Various Features of Sequences J. Theor. Biol. 2011, 269, 208-216
    • (2011) J. Theor. Biol. , vol.269 , pp. 208-216
    • Zakeri, P.1    Moshiri, B.2    Sadeghi, M.3
  • 63
    • 77958497871 scopus 로고    scopus 로고
    • Prediction of Cyclin Proteins Using Chou's Pseudo Amino Acid Composition
    • Mohabatkar, H. Prediction of Cyclin Proteins Using Chou's Pseudo Amino Acid Composition Protein Pept. Lett. 2010, 17, 1207-1214
    • (2010) Protein Pept. Lett. , vol.17 , pp. 1207-1214
    • Mohabatkar, H.1
  • 64
    • 79953735805 scopus 로고    scopus 로고
    • Predicting Protein Folding Rates Using the Concept of Chou's Pseudo Amino Acid Composition
    • J., G.; Rao, N.; Liu, G.; Yang, Y.; Wang, G. Predicting Protein Folding Rates Using the Concept of Chou's Pseudo Amino Acid Composition J. Comput. Chem. 2011, 32, 1612-1617
    • (2011) J. Comput. Chem. , vol.32 , pp. 1612-1617
    • Rao, N.1    Liu, G.2    Yang, Y.3    Wang, G.4
  • 65
    • 77951992931 scopus 로고    scopus 로고
    • Prediction of G-Protein-Coupled Receptor Classes in Low Homology Using Chou's Pseudo Amino Acid Composition with Approximate Entropy and Hydrophobicity Patterns
    • Gu, Q.; Ding, Y. S.; Zhang, T. L. Prediction of G-Protein-Coupled Receptor Classes in Low Homology Using Chou's Pseudo Amino Acid Composition with Approximate Entropy and Hydrophobicity Patterns Protein Pept. Lett 2010, 17, 559-567
    • (2010) Protein Pept. Lett , vol.17 , pp. 559-567
    • Gu, Q.1    Ding, Y.S.2    Zhang, T.L.3
  • 66
    • 0003957032 scopus 로고    scopus 로고
    • Credibility: Evaluating What's Been Learned
    • Chapter 5: In, 2nd ed. Gray, J. Morgan Kaufman: San Francisco, CA
    • Witten, I. H.; Frank, E. Chapter 5: Credibility: Evaluating What's Been Learned. In Data Mining: Practical Machine Learning Tools and Techniques, 2nd ed.; Gray, J., Ed.; Morgan Kaufman: San Francisco, CA, 2005; pp 143-186.
    • (2005) Data Mining: Practical Machine Learning Tools and Techniques , pp. 143-186
    • Witten, I.H.1    Frank, E.2
  • 67
    • 34247386376 scopus 로고    scopus 로고
    • Support Vector Inductive Logic Programming Outperforms the Naive Bayes Classifier and Inductive Logic Programming for the Classification of Bioactive Chemical Compounds
    • Cannon, E. O.; Amini, A.; Bender, A.; Sternberg, M. J.; Muggleton, S. H.; Glen, R. C.; Mitchell, J. B. Support Vector Inductive Logic Programming Outperforms the Naive Bayes Classifier and Inductive Logic Programming for the Classification of Bioactive Chemical Compounds J. Comput.-Aided Mol. Des. 2007, 21, 269-280
    • (2007) J. Comput.-Aided Mol. Des. , vol.21 , pp. 269-280
    • Cannon, E.O.1    Amini, A.2    Bender, A.3    Sternberg, M.J.4    Muggleton, S.H.5    Glen, R.C.6    Mitchell, J.B.7
  • 68
    • 0016772212 scopus 로고
    • Comparison of the Predicted and Observed Secondary Structure of T4 Phage Lysozyme
    • Matthews, B. W. Comparison of the Predicted and Observed Secondary Structure of T4 Phage Lysozyme Biochim. Biophys. Acta 1975, 405, 442-451
    • (1975) Biochim. Biophys. Acta , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 69
    • 34247272948 scopus 로고    scopus 로고
    • Evaluating Virtual Screening Methods: Good and Bad Metrics for the 'Early Recognition' Problem
    • Truchon, J. F.; Bayly, C. I. Evaluating Virtual Screening Methods: Good and Bad Metrics for the 'Early Recognition' Problem J. Chem. Inf. Model. 2007, 47, 488-508
    • (2007) J. Chem. Inf. Model. , vol.47 , pp. 488-508
    • Truchon, J.F.1    Bayly, C.I.2
  • 70
    • 41349106585 scopus 로고    scopus 로고
    • Evaluation of the Performance of 3d Virtual Screening Protocols: Rmsd Comparisons, Enrichment Assessments, and Decoy Selection - What Can We Learn from Earlier Mistakes?
    • Kirchmair, J.; Markt, P.; Distinto, S.; Wolber, G.; Langer, T. Evaluation of the Performance of 3d Virtual Screening Protocols: Rmsd Comparisons, Enrichment Assessments, and Decoy Selection - What Can We Learn from Earlier Mistakes? J. Comput.-Aided Mol. Des. 2008, 22, 213-228
    • (2008) J. Comput.-Aided Mol. Des. , vol.22 , pp. 213-228
    • Kirchmair, J.1    Markt, P.2    Distinto, S.3    Wolber, G.4    Langer, T.5
  • 73
    • 0015884712 scopus 로고
    • On Model Building in Structure-Activity Relationships. A Reexamination of Adrenergic Blocking Activity of Beta-Halo-Beta-Arylalkylamines
    • Unger, S. H.; Hansch, C. On Model Building in Structure-Activity Relationships. A Reexamination of Adrenergic Blocking Activity of Beta-Halo-Beta-Arylalkylamines J. Med. Chem. 1973, 16, 745-749
    • (1973) J. Med. Chem. , vol.16 , pp. 745-749
    • Unger, S.H.1    Hansch, C.2
  • 74
    • 0034713831 scopus 로고    scopus 로고
    • Action of Antimicrobial Peptides: Two-State Model
    • Huang, H. W. Action of Antimicrobial Peptides: Two-State Model Biochemistry 2000, 39, 8347-8352
    • (2000) Biochemistry , vol.39 , pp. 8347-8352
    • Huang, H.W.1
  • 75
    • 0034113230 scopus 로고    scopus 로고
    • Membranolytic Selectivity of Cystine-Stabilized Cyclic Protegrins
    • Tam, J. P.; Wu, C.; Yang, J. L. Membranolytic Selectivity of Cystine-Stabilized Cyclic Protegrins Eur. J. Biochem. 2000, 267, 3289-3300
    • (2000) Eur. J. Biochem. , vol.267 , pp. 3289-3300
    • Tam, J.P.1    Wu, C.2    Yang, J.L.3
  • 77
    • 3042628682 scopus 로고    scopus 로고
    • Prediction of Antibiotic Activity and Synthesis of New Pentadecapeptides Based on Lactoferricins
    • Lejon, T.; Stiberg, T.; Strom, M. B.; Svendsen, J. S. Prediction of Antibiotic Activity and Synthesis of New Pentadecapeptides Based on Lactoferricins J. Pept. Sci. 2004, 10, 329-335
    • (2004) J. Pept. Sci. , vol.10 , pp. 329-335
    • Lejon, T.1    Stiberg, T.2    Strom, M.B.3    Svendsen, J.S.4
  • 78
    • 4344638189 scopus 로고    scopus 로고
    • De Novo Design of Potent Antimicrobial Peptides
    • Frecer, V.; Ho, B.; Ding, J. L. De Novo Design of Potent Antimicrobial Peptides Antimicrob. Agents Chemother. 2004, 48, 3349-3357
    • (2004) Antimicrob. Agents Chemother. , vol.48 , pp. 3349-3357
    • Frecer, V.1    Ho, B.2    Ding, J.L.3
  • 79
    • 11144242839 scopus 로고    scopus 로고
    • Protegrin Structure-Activity Relationships: Using Homology Models of Synthetic Sequences to Determine Structural Characteristics Important for Activity
    • Ostberg, N.; Kaznessis, Y. Protegrin Structure-Activity Relationships: Using Homology Models of Synthetic Sequences to Determine Structural Characteristics Important for Activity Peptides 2005, 26, 197-206
    • (2005) Peptides , vol.26 , pp. 197-206
    • Ostberg, N.1    Kaznessis, Y.2
  • 80
    • 60749130267 scopus 로고    scopus 로고
    • Use of Artificial Intelligence in the Design of Small Peptide Antibiotics Effective against a Broad Spectrum of Highly Antibiotic-Resistant Superbugs
    • Cherkasov, A.; Hilpert, K.; Jenssen, H.; Fjell, C. D.; Waldbrook, M.; Mullaly, S. C.; Volkmer, R.; Hancock, R. E. Use of Artificial Intelligence in the Design of Small Peptide Antibiotics Effective against a Broad Spectrum of Highly Antibiotic-Resistant Superbugs ACS Chem. Biol. 2009, 4, 65-74
    • (2009) ACS Chem. Biol. , vol.4 , pp. 65-74
    • Cherkasov, A.1    Hilpert, K.2    Jenssen, H.3    Fjell, C.D.4    Waldbrook, M.5    Mullaly, S.C.6    Volkmer, R.7    Hancock, R.E.8
  • 82
    • 0032916291 scopus 로고    scopus 로고
    • Host Defence (Cationic) Peptides: What Is Their Future Clinical Potential?
    • Hancock, R. E. Host Defence (Cationic) Peptides: What Is Their Future Clinical Potential? Drugs 1999, 57, 469-473
    • (1999) Drugs , vol.57 , pp. 469-473
    • Hancock, R.E.1
  • 83
    • 0032454840 scopus 로고    scopus 로고
    • Structure-Function Relationships of Antimicrobial Peptides
    • Hwang, P. M.; Vogel, H. J. Structure-Function Relationships of Antimicrobial Peptides Biochem. Cell. Biol. 1998, 76, 235-246
    • (1998) Biochem. Cell. Biol. , vol.76 , pp. 235-246
    • Hwang, P.M.1    Vogel, H.J.2
  • 84
    • 0032443219 scopus 로고    scopus 로고
    • Mode of Action of Linear Amphipathic Alpha-Helical Antimicrobial Peptides
    • Oren, Z.; Shai, Y. Mode of Action of Linear Amphipathic Alpha-Helical Antimicrobial Peptides Biopolymers 1998, 47, 451-463
    • (1998) Biopolymers , vol.47 , pp. 451-463
    • Oren, Z.1    Shai, Y.2
  • 85
    • 0024716284 scopus 로고
    • Atomic Physicochemical Parameters for Three Dimensional Structure Directed Quantitative Structure-Activity Relationships. 4. Additional Parameters for Hydrophobic and Dispersive Interactions and Their Application for an Automated Superposition of Certain Naturally Occurring Nucleoside Antibiotics
    • Viswanadhan, V. N.; Ghose, A. K.; Revankar, G. R.; Robins, R. K. Atomic Physicochemical Parameters for Three Dimensional Structure Directed Quantitative Structure-Activity Relationships. 4. Additional Parameters for Hydrophobic and Dispersive Interactions and Their Application for an Automated Superposition of Certain Naturally Occurring Nucleoside Antibiotics J. Chem. Inf. Comput. Sci. 1989, 29, 163-172
    • (1989) J. Chem. Inf. Comput. Sci. , vol.29 , pp. 163-172
    • Viswanadhan, V.N.1    Ghose, A.K.2    Revankar, G.R.3    Robins, R.K.4
  • 86
    • 0034351504 scopus 로고    scopus 로고
    • Widely Applicable Set of Descriptors
    • Labute, P. A Widely Applicable Set of Descriptors J. Mol. Graphics Modell. 2000, 18, 464-477
    • (2000) J. Mol. Graphics Modell. , vol.18 , pp. 464-477
    • Labute, P.A.1
  • 87
    • 9144271815 scopus 로고    scopus 로고
    • Searching Chemical Structures
    • In, Gasteiger, J. Engel, T. Wiley-VCH Verlag GmbH & Co. KgaA: Weinheim, Germany
    • Kochev, N.; Monev, V.; Bangov, I. Searching Chemical Structures. In Chemoinformatics: A Textbook, Gasteiger, J.; Engel, T., Eds.; Wiley-VCH Verlag GmbH & Co. KgaA: Weinheim, Germany, 2003; pp 291-318.
    • (2003) Chemoinformatics: A Textbook , pp. 291-318
    • Kochev, N.1    Monev, V.2    Bangov, I.3
  • 88
    • 38649141382 scopus 로고
    • Calculation of the Credibility of Human Testimony
    • Hooper, G. A Calculation of the Credibility of Human Testimony Phil. Trans. Royal Soc. 1699, 21, 359-365
    • (1699) Phil. Trans. Royal Soc. , vol.21 , pp. 359-365
    • Hooper, G.A.1
  • 89
    • 84972503502 scopus 로고
    • The Combination of Evidence
    • Shafer, G. The Combination of Evidence Int. J. Intell. Syst. 1986, 1, 155-179
    • (1986) Int. J. Intell. Syst. , vol.1 , pp. 155-179
    • Shafer, G.1
  • 90
    • 45749116266 scopus 로고    scopus 로고
    • Application of Belief Theory to Similarity Data Fusion for Use in Analog Searching and Lead Hopping
    • Muchmore, S. W.; Debe, D. A.; Metz, J. T.; Brown, S. P.; Martin, Y. C.; Hajduk, P. J. Application of Belief Theory to Similarity Data Fusion for Use in Analog Searching and Lead Hopping J. Chem. Inf. Model. 2008, 48, 941-948
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 941-948
    • Muchmore, S.W.1    Debe, D.A.2    Metz, J.T.3    Brown, S.P.4    Martin, Y.C.5    Hajduk, P.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.